Wall clock time and date at job start Mon Mar 30 2020 07:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38221 * 120.00976 * 2 1 4 4 C 1.38230 * 120.02563 * 180.02562 * 3 2 1 5 5 C 1.38263 * 120.04954 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.98681 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.87016 * 268.97015 * 6 5 4 8 8 C 1.54100 * 109.87830 * 29.98010 * 6 5 4 9 9 C 1.54812 * 104.18717 * 121.45073 * 8 6 5 10 10 C 1.54989 * 102.09398 * 20.88273 * 9 8 6 11 11 H 1.09005 * 110.62251 * 81.47429 * 10 9 8 12 12 C 1.50696 * 110.61988 * 204.31677 * 10 9 8 13 13 H 1.08000 * 119.99866 * 359.97438 * 12 10 9 14 14 C 1.37887 * 119.99975 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00075 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99675 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47130 * 60.00285 * 16 14 12 18 18 H 1.48503 * 109.46895 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47581 * 299.99953 * 16 14 12 20 20 O 1.43745 * 109.87943 * 147.81042 * 6 5 4 21 21 C 1.38175 * 120.02891 * 359.95742 * 5 4 3 22 22 C 1.38436 * 120.01502 * 179.97438 * 2 1 3 23 23 F 1.35093 * 120.02478 * 0.02562 * 22 2 1 24 24 H 1.08996 * 109.46799 * 90.00308 * 1 2 3 25 25 H 1.09002 * 109.46806 * 209.99886 * 1 2 3 26 26 H 1.08994 * 109.47566 * 330.00140 * 1 2 3 27 27 H 1.07995 * 119.99081 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.97452 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46804 * 60.70148 * 7 6 5 30 30 H 1.09003 * 109.46763 * 180.70078 * 7 6 5 31 31 H 1.08995 * 109.47275 * 300.70117 * 7 6 5 32 32 H 1.08992 * 110.48680 * 240.13062 * 8 6 5 33 33 H 1.09002 * 110.48533 * 2.77636 * 8 6 5 34 34 H 1.09003 * 110.90349 * 139.07734 * 9 8 6 35 35 H 1.09003 * 110.90951 * 262.64754 * 9 8 6 36 36 H 0.96995 * 119.99960 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.01835 * 179.74986 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.2733 0.0007 -0.0016 6 6 5.7803 0.0028 -0.0028 7 6 6.2992 -0.0217 -1.4418 8 6 6.3031 1.2584 0.7215 9 6 7.1702 0.6977 1.8749 10 6 7.4902 -0.7338 1.3743 11 1 8.3203 -0.7168 0.6680 12 6 7.8010 -1.6445 2.5340 13 1 7.7790 -1.2604 3.5432 14 6 8.1135 -2.9681 2.3067 15 7 8.1397 -3.4359 1.0779 16 14 8.4993 -4.0967 3.7443 17 1 7.3282 -4.1559 4.6554 18 1 8.8015 -5.4592 3.2366 19 1 9.6757 -3.5723 4.4836 20 8 6.2712 -1.1409 0.7165 21 6 3.5844 -1.1971 -0.0013 22 6 2.1995 -1.1987 0.0005 23 9 1.5248 -2.3691 0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6583 2.1322 -0.0004 28 1 4.1199 2.1330 -0.0001 29 1 5.9481 0.8649 -1.9698 30 1 7.3892 -0.0327 -1.4348 31 1 5.9301 -0.9148 -1.9460 32 1 6.9096 1.8630 0.0473 33 1 5.4732 1.8435 1.1178 34 1 8.0832 1.2812 1.9943 35 1 6.6056 0.6673 2.8068 36 1 8.3592 -4.3671 0.9180 37 1 4.1256 -2.1317 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383765028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:24 Heat of formation + Delta-G solvation = -77.639203 kcal Electronic energy + Delta-G solvation = -20224.030701 eV Core-core repulsion = 17073.237417 eV Total energy + Delta-G solvation = -3150.793284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.59034 -39.66877 -37.77556 -33.55517 -32.29942 -31.27254 -30.14284 -30.03146 -26.75957 -26.41973 -23.55676 -22.47675 -21.76355 -20.13418 -19.37756 -17.03305 -16.35589 -16.16199 -15.51356 -15.40810 -14.96160 -14.60779 -14.21354 -13.73333 -13.46488 -13.31429 -12.99490 -12.89481 -12.50707 -12.37277 -12.02867 -11.73696 -11.59977 -11.49410 -11.28815 -10.89336 -10.81779 -10.59483 -10.40510 -10.19330 -10.01066 -9.73081 -9.11117 -8.64039 -8.53745 -8.26507 -8.06340 -6.04551 -4.16875 1.40799 1.52403 3.31746 3.36542 3.39047 3.83486 4.40706 4.50133 4.75162 4.83786 5.02308 5.19571 5.30949 5.42338 5.53072 5.56043 5.57860 5.58603 5.76637 5.88901 5.91797 6.08294 6.12889 6.19442 6.28879 6.34225 6.40728 6.54344 6.58627 6.61926 6.72396 6.75790 6.85778 6.98089 7.21573 7.49557 7.86767 8.21048 8.55337 8.94620 9.53891 11.03286 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.006195 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.665976 B = 4518.957730 C = 5243.718045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.100 4.100 4 C -0.128 4.128 5 C -0.035 4.035 6 C 0.128 3.872 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.147 4.147 10 C 0.210 3.790 11 H 0.030 0.970 12 C -0.529 4.529 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.864 5.864 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 O -0.343 6.343 21 C -0.118 4.118 22 C 0.090 3.910 23 F -0.143 7.143 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 9.507 -4.119 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.118 4.118 4 C -0.146 4.146 5 C -0.035 4.035 6 C 0.087 3.913 7 C -0.207 4.207 8 C -0.187 4.187 9 C -0.185 4.185 10 C 0.156 3.844 11 H 0.048 0.952 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.501 5.501 16 Si 0.719 3.281 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 O -0.262 6.262 21 C -0.137 4.137 22 C 0.071 3.929 23 F -0.121 7.121 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.240 9.087 -4.232 14.330 hybrid contribution 0.184 -0.727 0.710 1.033 sum -10.056 8.360 -3.522 13.543 Atomic orbital electron populations 1.20657 0.90719 1.02887 1.02281 1.19823 0.96553 0.92129 1.04981 1.20759 0.93882 0.96600 1.00541 1.21101 0.93807 0.97972 1.01693 1.19861 0.95649 0.92034 0.95999 1.20703 0.88198 0.89410 0.93014 1.22163 1.01754 1.01133 0.95658 1.23140 0.99902 0.97174 0.98445 1.23198 0.98298 0.99535 0.97482 1.20669 0.83778 0.88492 0.91507 0.95241 1.20962 1.48151 0.95189 0.92326 0.91871 1.25076 0.93913 0.98210 0.95608 1.70006 1.45705 1.15046 1.19297 0.86670 0.78909 0.79773 0.82703 1.20045 1.21140 1.20053 1.89289 1.42037 1.29697 1.65210 1.21148 0.91420 1.00781 1.00366 1.17583 0.90101 0.80722 1.04495 1.91446 1.80332 1.46301 1.94058 0.91298 0.91503 0.91350 0.85545 0.85294 0.93062 0.91807 0.92305 0.91610 0.91324 0.92164 0.91763 0.92787 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.84 36.00 0.35 -0.84 16 2 C -0.13 -1.91 5.89 -104.56 -0.62 -2.52 16 3 C -0.10 -1.30 9.70 -39.59 -0.38 -1.69 16 4 C -0.13 -1.87 8.73 -39.57 -0.35 -2.21 16 5 C -0.04 -0.63 4.86 -104.63 -0.51 -1.14 16 6 C 0.13 2.50 1.00 -91.20 -0.09 2.41 16 7 C -0.15 -2.65 8.60 37.16 0.32 -2.33 16 8 C -0.15 -2.59 5.76 -25.20 -0.15 -2.74 16 9 C -0.15 -3.03 6.55 -24.73 -0.16 -3.19 16 10 C 0.21 5.35 3.04 -26.83 -0.08 5.27 16 11 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 12 C -0.53 -14.80 8.82 -34.44 -0.30 -15.10 16 13 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 14 C 0.08 2.20 5.44 -17.82 -0.10 2.10 16 15 N -0.86 -25.44 13.13 55.43 0.73 -24.71 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 O -0.34 -8.64 9.43 -35.23 -0.33 -8.97 16 21 C -0.12 -2.25 9.34 -39.51 -0.37 -2.62 16 22 C 0.09 1.53 7.24 -39.42 -0.29 1.25 16 23 F -0.14 -2.46 16.48 2.25 0.04 -2.43 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.75 7.64 -51.93 -0.40 0.35 16 26 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.60 6.42 -52.49 -0.34 1.26 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.07 1.06 5.75 -51.93 -0.30 0.76 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.14 3.06 7.57 -52.49 -0.40 2.67 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -30.22 308.88 -7.82 -38.04 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.17 Total: 0.35 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.71 Total: -23.35 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.73 Total: -24.71 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.33 Total: -8.97 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.22 -7.82 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383765028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.600 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds