Wall clock time and date at job start Mon Mar 30 2020 07:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38221 * 120.00976 * 2 1 4 4 C 1.38230 * 120.02563 * 180.02562 * 3 2 1 5 5 C 1.38263 * 120.04954 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.98681 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.87016 * 268.97015 * 6 5 4 8 8 C 1.54100 * 109.87830 * 29.98010 * 6 5 4 9 9 C 1.54812 * 104.18717 * 121.45073 * 8 6 5 10 10 C 1.54989 * 102.09398 * 20.88273 * 9 8 6 11 11 H 1.09005 * 110.62251 * 81.47429 * 10 9 8 12 12 C 1.50696 * 110.61988 * 204.31677 * 10 9 8 13 13 H 1.08000 * 119.99866 * 359.97438 * 12 10 9 14 14 C 1.37887 * 119.99975 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00075 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99675 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47130 * 60.00285 * 16 14 12 18 18 H 1.48503 * 109.46895 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47581 * 299.99953 * 16 14 12 20 20 O 1.43745 * 109.87943 * 147.81042 * 6 5 4 21 21 C 1.38175 * 120.02891 * 359.95742 * 5 4 3 22 22 C 1.38436 * 120.01502 * 179.97438 * 2 1 3 23 23 F 1.35093 * 120.02478 * 0.02562 * 22 2 1 24 24 H 1.08996 * 109.46799 * 90.00308 * 1 2 3 25 25 H 1.09002 * 109.46806 * 209.99886 * 1 2 3 26 26 H 1.08994 * 109.47566 * 330.00140 * 1 2 3 27 27 H 1.07995 * 119.99081 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.97452 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46804 * 60.70148 * 7 6 5 30 30 H 1.09003 * 109.46763 * 180.70078 * 7 6 5 31 31 H 1.08995 * 109.47275 * 300.70117 * 7 6 5 32 32 H 1.08992 * 110.48680 * 240.13062 * 8 6 5 33 33 H 1.09002 * 110.48533 * 2.77636 * 8 6 5 34 34 H 1.09003 * 110.90349 * 139.07734 * 9 8 6 35 35 H 1.09003 * 110.90951 * 262.64754 * 9 8 6 36 36 H 0.96995 * 119.99960 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.01835 * 179.74986 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.2733 0.0007 -0.0016 6 6 5.7803 0.0028 -0.0028 7 6 6.2992 -0.0217 -1.4418 8 6 6.3031 1.2584 0.7215 9 6 7.1702 0.6977 1.8749 10 6 7.4902 -0.7338 1.3743 11 1 8.3203 -0.7168 0.6680 12 6 7.8010 -1.6445 2.5340 13 1 7.7790 -1.2604 3.5432 14 6 8.1135 -2.9681 2.3067 15 7 8.1397 -3.4359 1.0779 16 14 8.4993 -4.0967 3.7443 17 1 7.3282 -4.1559 4.6554 18 1 8.8015 -5.4592 3.2366 19 1 9.6757 -3.5723 4.4836 20 8 6.2712 -1.1409 0.7165 21 6 3.5844 -1.1971 -0.0013 22 6 2.1995 -1.1987 0.0005 23 9 1.5248 -2.3691 0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6583 2.1322 -0.0004 28 1 4.1199 2.1330 -0.0001 29 1 5.9481 0.8649 -1.9698 30 1 7.3892 -0.0327 -1.4348 31 1 5.9301 -0.9148 -1.9460 32 1 6.9096 1.8630 0.0473 33 1 5.4732 1.8435 1.1178 34 1 8.0832 1.2812 1.9943 35 1 6.6056 0.6673 2.8068 36 1 8.3592 -4.3671 0.9180 37 1 4.1256 -2.1317 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383765028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:24 Heat of formation + Delta-G solvation = -94.504531 kcal Electronic energy + Delta-G solvation = -20224.762036 eV Core-core repulsion = 17073.237417 eV Total energy + Delta-G solvation = -3151.524619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.91523 -41.08859 -39.22336 -35.21821 -34.04148 -32.83623 -31.65889 -31.29148 -28.51099 -27.69533 -25.25408 -23.78695 -23.05366 -21.88281 -20.78449 -18.83309 -17.99307 -17.48947 -16.82563 -16.73139 -16.66447 -16.40576 -15.75647 -15.28649 -14.71843 -14.47535 -14.33800 -14.22998 -14.16011 -13.65612 -13.57329 -13.24860 -13.04080 -12.77379 -12.69859 -12.56972 -12.36768 -12.27362 -12.02453 -11.93907 -11.50913 -11.32729 -11.00742 -10.73813 -9.99200 -9.79324 -9.43657 -8.19362 -6.38977 0.19244 0.29755 1.37108 1.40441 1.47682 2.37644 2.61710 2.99960 3.25704 3.49758 3.68862 3.88771 3.97541 4.05072 4.14285 4.23065 4.42073 4.44992 4.59776 4.64951 4.70270 4.79000 4.82666 4.84064 4.96825 5.02791 5.07259 5.11534 5.17993 5.23718 5.31686 5.39738 5.43838 5.51353 5.65631 5.73693 6.00237 6.16030 6.59627 6.96399 7.36440 8.88776 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.006195 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.665976 B = 4518.957730 C = 5243.718045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.126 4.126 3 C -0.084 4.084 4 C -0.118 4.118 5 C -0.055 4.055 6 C 0.114 3.886 7 C -0.144 4.144 8 C -0.136 4.136 9 C -0.141 4.141 10 C 0.202 3.798 11 H -0.002 1.002 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.260 1.260 20 O -0.381 6.381 21 C -0.150 4.150 22 C 0.067 3.933 23 F -0.153 7.153 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.176 0.824 28 H 0.162 0.838 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.262 0.738 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 12.809 -3.679 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.127 4.127 3 C -0.101 4.101 4 C -0.135 4.135 5 C -0.055 4.055 6 C 0.073 3.927 7 C -0.201 4.201 8 C -0.173 4.173 9 C -0.179 4.179 10 C 0.146 3.854 11 H 0.015 0.985 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.179 4.179 15 N -0.541 5.541 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.184 1.184 20 O -0.301 6.301 21 C -0.169 4.169 22 C 0.048 3.952 23 F -0.132 7.132 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.193 0.807 28 H 0.180 0.820 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.083 12.403 -3.788 17.725 hybrid contribution 0.685 -1.715 0.517 1.917 sum -11.398 10.688 -3.271 15.964 Atomic orbital electron populations 1.20769 0.88058 1.04017 1.03647 1.20289 0.98482 0.91165 1.02753 1.21305 0.93340 0.97836 0.97660 1.21430 0.94727 0.97453 0.99926 1.19826 0.94630 0.93019 0.98057 1.21052 0.89637 0.88695 0.93283 1.22122 1.00707 1.02063 0.95257 1.23133 1.00519 0.96358 0.97293 1.23073 0.99716 0.96786 0.98282 1.20530 0.83370 0.91141 0.90333 0.98467 1.21434 1.48057 0.96120 0.93303 0.91770 1.25953 0.93824 0.99920 0.98227 1.70152 1.47199 1.15231 1.21490 0.85616 0.79053 0.77673 0.79328 1.19893 1.20816 1.18403 1.89204 1.41629 1.33034 1.66266 1.20937 0.92601 0.99838 1.03548 1.17816 0.89530 0.81755 1.06054 1.91410 1.80276 1.47162 1.94306 0.89683 0.92341 0.88302 0.80659 0.82010 0.89029 0.93259 0.94367 0.88875 0.88379 0.90397 0.92434 0.92970 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.84 71.23 0.70 -1.26 16 2 C -0.13 -3.22 5.89 -19.82 -0.12 -3.34 16 3 C -0.08 -1.77 9.70 22.26 0.22 -1.55 16 4 C -0.12 -2.96 8.73 22.27 0.19 -2.77 16 5 C -0.05 -1.94 4.86 -19.87 -0.10 -2.04 16 6 C 0.11 4.45 1.00 -11.17 -0.01 4.44 16 7 C -0.14 -5.15 8.60 71.98 0.62 -4.53 16 8 C -0.14 -4.39 5.76 31.58 0.18 -4.21 16 9 C -0.14 -5.70 6.55 31.89 0.21 -5.49 16 10 C 0.20 10.66 3.04 30.53 0.09 10.76 16 11 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 12 C -0.55 -32.02 8.82 25.60 0.23 -31.79 16 13 H 0.06 3.58 7.77 -2.91 -0.02 3.56 16 14 C 0.02 1.33 5.44 84.66 0.46 1.79 16 15 N -0.90 -56.02 13.13 21.45 0.28 -55.74 16 16 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 O -0.38 -20.26 9.43 -148.98 -1.41 -21.67 16 21 C -0.15 -6.01 9.34 22.31 0.21 -5.80 16 22 C 0.07 2.32 7.24 22.38 0.16 2.48 16 23 F -0.15 -5.49 16.48 44.97 0.74 -4.75 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.17 7.64 -2.39 -0.02 1.16 16 26 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.16 3.00 6.42 -2.91 -0.02 2.98 16 29 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 2.50 7.69 -2.39 -0.02 2.49 16 33 H 0.10 2.58 5.75 -2.39 -0.01 2.57 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.10 4.74 7.57 -2.91 -0.02 4.72 16 Total: -1.00 -71.73 308.88 5.75 -65.98 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.06 Total: 12.14 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.05 Total: -43.30 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.28 Total: -55.74 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.41 Total: -21.67 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.74 Total: -4.75 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.73 5.75 -65.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383765028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.527 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds