Wall clock time and date at job start Mon Mar 30 2020 07:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 120.00788 * 2 1 4 4 C 1.38226 * 120.02532 * 180.27942 * 3 2 1 5 5 C 1.38265 * 120.04947 * 359.44039 * 4 3 2 6 6 C 1.50704 * 119.99039 * 180.30133 * 5 4 3 7 7 C 1.52996 * 109.82088 * 270.57166 * 6 5 4 8 8 C 1.54380 * 109.82944 * 149.58853 * 6 5 4 9 9 C 1.55308 * 102.25007 * 219.13132 * 8 6 5 10 10 C 1.54937 * 100.94365 * 34.13472 * 9 8 6 11 11 H 1.09001 * 110.31128 * 82.47326 * 10 9 8 12 12 C 1.50695 * 110.31304 * 204.64159 * 10 9 8 13 13 H 1.08007 * 120.00124 * 357.16045 * 12 10 9 14 14 C 1.37874 * 120.00484 * 177.16890 * 12 10 9 15 15 N 1.31519 * 119.99770 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00335 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47115 * 90.00041 * 16 14 12 18 18 H 1.48498 * 109.47192 * 209.99755 * 16 14 12 19 19 H 1.48493 * 109.47007 * 329.99872 * 16 14 12 20 20 O 1.43241 * 109.82776 * 31.45575 * 6 5 4 21 21 C 1.38183 * 120.02475 * 0.28283 * 5 4 3 22 22 C 1.38431 * 120.01798 * 179.72477 * 2 1 3 23 23 F 1.35104 * 120.02518 * 359.97223 * 22 2 1 24 24 H 1.08995 * 109.46802 * 270.27158 * 1 2 3 25 25 H 1.08993 * 109.47375 * 30.27666 * 1 2 3 26 26 H 1.09000 * 109.46629 * 150.27856 * 1 2 3 27 27 H 1.08000 * 119.99099 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.97943 * 179.72632 * 4 3 2 29 29 H 1.09002 * 109.47275 * 59.30079 * 7 6 5 30 30 H 1.09010 * 109.46855 * 179.29701 * 7 6 5 31 31 H 1.08998 * 109.47268 * 299.29485 * 7 6 5 32 32 H 1.08992 * 110.84990 * 337.32053 * 8 6 5 33 33 H 1.09000 * 110.84353 * 100.94490 * 8 6 5 34 34 H 1.09008 * 111.12583 * 276.21475 * 9 8 6 35 35 H 1.08998 * 111.12625 * 152.05807 * 9 8 6 36 36 H 0.97003 * 119.99590 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.00879 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1974 -0.0058 5 6 4.2733 0.0008 0.0000 6 6 5.7803 0.0029 0.0005 7 6 6.2996 0.0112 -1.4386 8 6 6.3055 -1.2454 0.7417 9 6 7.5237 -0.6782 1.5202 10 6 7.0234 0.7509 1.8487 11 1 6.3885 0.7353 2.7346 12 6 8.1919 1.6792 2.0578 13 1 9.2007 1.2957 2.0147 14 6 7.9735 3.0180 2.3043 15 7 6.7451 3.4851 2.3564 16 14 9.4220 4.1685 2.5642 17 1 9.8463 4.7331 1.2579 18 1 9.0209 5.2719 3.4735 19 1 10.5504 3.4151 3.1677 20 8 6.2644 1.1563 0.6984 21 6 3.5843 -1.1970 0.0058 22 6 2.1996 -1.1986 0.0058 23 9 1.5249 -2.3691 0.0119 24 1 -0.3633 0.0049 1.0276 25 1 -0.3634 0.8874 -0.5181 26 1 -0.3632 -0.8925 -0.5095 27 1 1.6583 2.1322 0.0004 28 1 4.1199 2.1330 -0.0103 29 1 5.9282 0.8970 -1.9538 30 1 7.3896 0.0252 -1.4315 31 1 5.9511 -0.8828 -1.9558 32 1 5.5533 -1.6341 1.4281 33 1 6.6203 -2.0127 0.0343 34 1 8.4130 -0.6480 0.8905 35 1 7.7085 -1.2486 2.4305 36 1 6.5915 4.4271 2.5295 37 1 4.1257 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383765049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:26 Heat of formation + Delta-G solvation = -94.432032 kcal Electronic energy + Delta-G solvation = -20221.165781 eV Core-core repulsion = 17069.644306 eV Total energy + Delta-G solvation = -3151.521475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.88036 -41.07227 -39.20558 -35.22583 -34.02935 -32.78861 -31.68493 -31.32458 -28.38113 -27.69027 -25.17098 -23.91784 -22.96597 -21.90024 -20.85396 -18.60795 -18.19108 -17.42331 -17.03028 -16.70241 -16.58262 -16.30357 -15.75797 -15.22260 -14.72824 -14.37290 -14.29640 -14.19195 -14.03021 -13.64549 -13.53081 -13.22283 -13.18341 -12.80507 -12.67247 -12.49768 -12.38732 -12.30779 -12.04647 -12.03092 -11.43093 -11.41357 -10.96799 -10.68522 -9.90441 -9.79687 -9.43171 -8.12322 -6.32705 0.21916 0.26415 1.41671 1.42571 1.52899 2.41980 2.61675 3.00012 3.24522 3.52303 3.66466 3.86336 3.93273 4.00524 4.11222 4.24464 4.42042 4.44089 4.62968 4.66898 4.71269 4.76112 4.79422 4.83751 4.93034 5.02947 5.06100 5.09577 5.16240 5.22017 5.24554 5.40132 5.47796 5.58471 5.70129 5.77729 5.99725 6.20596 6.63145 7.08387 7.43148 8.95186 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.005580 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.516607 B = 5017.081764 C = 5590.742148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.096 4.096 4 C -0.113 4.113 5 C -0.068 4.068 6 C 0.119 3.881 7 C -0.134 4.134 8 C -0.136 4.136 9 C -0.139 4.139 10 C 0.204 3.796 11 H -0.015 1.015 12 C -0.554 4.554 13 H 0.065 0.935 14 C 0.025 3.975 15 N -0.898 5.898 16 Si 0.958 3.042 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.262 1.262 20 O -0.371 6.371 21 C -0.147 4.147 22 C 0.078 3.922 23 F -0.141 7.141 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.260 0.740 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -8.645 -6.368 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.114 4.114 4 C -0.131 4.131 5 C -0.069 4.069 6 C 0.079 3.921 7 C -0.191 4.191 8 C -0.173 4.173 9 C -0.176 4.176 10 C 0.149 3.851 11 H 0.003 0.997 12 C -0.592 4.592 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.536 5.536 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.187 1.187 20 O -0.291 6.291 21 C -0.166 4.166 22 C 0.059 3.941 23 F -0.120 7.120 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.168 0.832 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.999 -8.337 -6.395 13.835 hybrid contribution 0.697 0.629 0.456 1.044 sum -8.303 -7.708 -5.939 12.791 Atomic orbital electron populations 1.20757 0.88073 1.04157 1.03467 1.20204 0.98459 0.91298 1.02821 1.21128 0.93156 0.98165 0.98950 1.21155 0.94683 0.98357 0.98934 1.20165 0.96044 0.92764 0.97893 1.21022 0.88591 0.88155 0.94364 1.21949 1.01212 1.02172 0.93807 1.23214 0.97549 0.97011 0.99517 1.23199 0.97951 0.96325 1.00152 1.20356 0.89051 0.91376 0.84326 0.99690 1.21518 0.92833 0.94500 1.50317 0.91690 1.25910 0.98154 1.00065 0.93578 1.70184 1.21447 1.14374 1.47570 0.85575 0.79666 0.78407 0.78059 1.20158 1.20794 1.18653 1.88773 1.70708 1.28376 1.41204 1.21052 0.92264 0.99245 1.04016 1.17544 0.89915 0.81176 1.05500 1.91443 1.80280 1.46048 1.94225 0.90190 0.89288 0.90893 0.83215 0.87245 0.93426 0.92284 0.89703 0.90878 0.87860 0.91201 0.90635 0.93088 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.83 71.24 0.70 -1.43 16 2 C -0.13 -3.48 5.89 -19.82 -0.12 -3.60 16 3 C -0.10 -2.89 9.70 22.26 0.22 -2.68 16 4 C -0.11 -4.22 9.36 22.27 0.21 -4.02 16 5 C -0.07 -2.47 4.81 -19.87 -0.10 -2.57 16 6 C 0.12 4.61 1.08 -11.07 -0.01 4.60 16 7 C -0.13 -4.49 8.71 71.98 0.63 -3.86 16 8 C -0.14 -4.56 5.04 31.86 0.16 -4.40 16 9 C -0.14 -5.56 6.53 32.05 0.21 -5.35 16 10 C 0.20 10.69 3.27 30.51 0.10 10.79 16 11 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 12 C -0.55 -31.29 8.80 25.60 0.23 -31.06 16 13 H 0.06 3.52 7.77 -2.91 -0.02 3.50 16 14 C 0.03 1.43 5.42 84.65 0.46 1.89 16 15 N -0.90 -54.17 12.93 21.45 0.28 -53.89 16 16 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 O -0.37 -19.01 8.93 -148.98 -1.33 -20.34 16 21 C -0.15 -4.55 8.73 22.31 0.19 -4.35 16 22 C 0.08 2.29 7.24 22.37 0.16 2.45 16 23 F -0.14 -3.93 16.48 44.97 0.74 -3.18 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 26 H 0.07 1.35 7.64 -2.39 -0.02 1.33 16 27 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.11 4.75 7.54 -2.91 -0.02 4.72 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.38 6.87 -2.39 -0.02 2.36 16 33 H 0.10 2.73 7.82 -2.39 -0.02 2.71 16 34 H 0.07 2.74 8.05 -2.38 -0.02 2.72 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.15 3.95 6.84 -2.91 -0.02 3.93 16 Total: -1.00 -65.67 309.45 5.81 -59.87 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.05 Total: 15.10 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.04 Total: -43.58 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.28 Total: -53.89 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.33 Total: -20.34 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.18 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.67 5.81 -59.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383765049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.566 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds