Wall clock time and date at job start Mon Mar 30 2020 07:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38219 * 120.00948 * 2 1 4 4 C 1.38227 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.38271 * 120.04943 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.98537 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.99095 * 271.08688 * 6 5 4 8 8 C 1.54106 * 109.87764 * 150.00449 * 6 5 4 9 9 C 1.54813 * 104.18777 * 238.54751 * 8 6 5 10 10 C 1.54999 * 102.09103 * 339.11495 * 9 8 6 11 11 H 1.09001 * 110.62238 * 278.52989 * 10 9 8 12 12 C 1.50700 * 110.61569 * 155.52277 * 10 9 8 13 13 H 1.07995 * 120.00184 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99891 * 180.02562 * 12 10 9 15 15 N 1.31516 * 120.00007 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00169 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47203 * 59.99835 * 16 14 12 18 18 H 1.48501 * 109.47544 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47116 * 299.99996 * 16 14 12 20 20 O 1.43745 * 109.88297 * 32.17380 * 6 5 4 21 21 C 1.38177 * 120.02250 * 0.27852 * 5 4 3 22 22 C 1.38437 * 120.01653 * 180.02562 * 2 1 3 23 23 F 1.35099 * 120.02462 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.47446 * 90.00214 * 1 2 3 25 25 H 1.09008 * 109.46904 * 209.99912 * 1 2 3 26 26 H 1.09003 * 109.47574 * 330.00072 * 1 2 3 27 27 H 1.08003 * 119.98922 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.97354 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47138 * 298.91697 * 7 6 5 30 30 H 1.08993 * 109.47138 * 58.91895 * 7 6 5 31 31 H 1.09002 * 109.47143 * 178.92013 * 7 6 5 32 32 H 1.09001 * 110.48652 * 357.22234 * 8 6 5 33 33 H 1.09005 * 110.48835 * 119.73385 * 8 6 5 34 34 H 1.08999 * 110.90696 * 97.31570 * 9 8 6 35 35 H 1.09000 * 110.90312 * 220.92159 * 9 8 6 36 36 H 0.97007 * 120.00003 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.01077 * 179.71962 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1969 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2733 0.0007 -0.0005 6 6 5.7802 0.0028 -0.0005 7 6 6.3033 0.0309 -1.4381 8 6 6.3060 -1.2515 0.7240 9 6 7.1707 -0.6886 1.8782 10 6 7.4872 0.7439 1.3779 11 1 8.3177 0.7293 0.6721 12 6 7.7907 1.6562 2.5383 13 1 7.7667 1.2725 3.5475 14 6 8.0990 2.9808 2.3115 15 7 8.1277 3.4481 1.0826 16 14 8.4760 4.1115 3.7498 17 1 9.6517 3.5917 4.4933 18 1 8.7749 5.4748 3.2426 19 1 7.3016 4.1668 4.6570 20 8 6.2675 1.1477 0.7193 21 6 3.5843 -1.1970 -0.0058 22 6 2.1995 -1.1987 -0.0005 23 9 1.5248 -2.3692 -0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1322 -0.0004 28 1 4.1198 2.1330 -0.0001 29 1 5.9618 -0.8593 -1.9664 30 1 5.9277 0.9202 -1.9441 31 1 7.3930 0.0516 -1.4279 32 1 5.4774 -1.8390 1.1196 33 1 6.9129 -1.8556 0.0494 34 1 6.6051 -0.6594 2.8094 35 1 8.0852 -1.2696 1.9981 36 1 8.3450 4.3800 0.9230 37 1 4.1256 -2.1316 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383765056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:28 Heat of formation + Delta-G solvation = -77.966693 kcal Electronic energy + Delta-G solvation = -20180.047357 eV Core-core repulsion = 17029.239873 eV Total energy + Delta-G solvation = -3150.807485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.71136 -39.65958 -37.78110 -33.59414 -32.32984 -31.18745 -30.19215 -30.00692 -26.75111 -26.43561 -23.51910 -22.73207 -21.52906 -20.13204 -19.43399 -17.15454 -16.43266 -16.07328 -15.52146 -15.47555 -14.93320 -14.60680 -14.18797 -13.74966 -13.63571 -13.32252 -13.04199 -12.86989 -12.51839 -12.35463 -12.04768 -11.69570 -11.61039 -11.45787 -11.16814 -10.97275 -10.89761 -10.61170 -10.43064 -10.18103 -9.96503 -9.75030 -9.11876 -8.66817 -8.59276 -8.22473 -8.07630 -6.05908 -4.18160 1.43550 1.48122 3.30464 3.35016 3.37780 3.84854 4.37892 4.40047 4.76097 4.86796 5.05316 5.18919 5.30100 5.41148 5.53644 5.56795 5.57863 5.63361 5.77897 5.82228 5.91768 6.08678 6.11152 6.18866 6.28595 6.34364 6.38654 6.57186 6.59349 6.63559 6.73570 6.77354 6.88729 6.97837 7.20894 7.48893 7.85492 8.19863 8.54375 8.93316 9.52542 11.01853 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.005599 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.207270 B = 4999.706434 C = 5470.103291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.094 4.094 5 C -0.035 4.035 6 C 0.129 3.871 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.147 4.147 10 C 0.211 3.789 11 H 0.030 0.970 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.865 5.865 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 O -0.342 6.342 21 C -0.150 4.150 22 C 0.086 3.914 23 F -0.146 7.146 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.262 0.738 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 -7.119 -4.131 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.035 4.035 6 C 0.087 3.913 7 C -0.207 4.207 8 C -0.188 4.188 9 C -0.185 4.185 10 C 0.156 3.844 11 H 0.048 0.952 12 C -0.565 4.565 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.501 5.501 16 Si 0.719 3.281 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.261 6.261 21 C -0.169 4.169 22 C 0.067 3.933 23 F -0.124 7.124 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.146 0.854 28 H 0.158 0.842 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.186 -6.797 -4.243 12.960 hybrid contribution 0.182 0.225 0.715 0.771 sum -10.004 -6.572 -3.528 12.479 Atomic orbital electron populations 1.20663 0.90716 1.02894 1.02290 1.19838 0.96562 0.92124 1.04794 1.20933 0.94212 0.96687 0.99762 1.21240 0.93334 0.99273 0.97355 1.19848 0.95674 0.92049 0.95974 1.20682 0.88193 0.89365 0.93016 1.22161 1.01772 1.01115 0.95634 1.23154 0.99927 0.97249 0.98496 1.23197 0.98305 0.99530 0.97457 1.20677 0.83783 0.88486 0.91474 0.95212 1.20962 1.48254 0.95043 0.92287 0.91875 1.25068 0.93901 0.98204 0.95605 1.70013 1.45797 1.15006 1.19277 0.86671 0.78917 0.79759 0.82705 1.20067 1.21150 1.20052 1.89277 1.42043 1.29632 1.65181 1.20995 0.91834 0.99482 1.04596 1.17411 0.89861 0.80665 1.05405 1.91432 1.80445 1.46302 1.94252 0.91286 0.91607 0.91228 0.85381 0.84208 0.93137 0.92234 0.91781 0.91473 0.91618 0.91752 0.92161 0.92806 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.83 36.00 0.35 -0.84 16 2 C -0.13 -1.88 5.89 -104.56 -0.62 -2.50 16 3 C -0.10 -1.44 9.70 -39.59 -0.38 -1.83 16 4 C -0.09 -1.65 9.36 -39.57 -0.37 -2.02 16 5 C -0.04 -0.63 4.86 -104.63 -0.51 -1.14 16 6 C 0.13 2.51 1.00 -91.20 -0.09 2.42 16 7 C -0.15 -2.65 8.60 37.16 0.32 -2.33 16 8 C -0.15 -2.69 5.75 -25.20 -0.14 -2.83 16 9 C -0.15 -3.05 6.55 -24.72 -0.16 -3.21 16 10 C 0.21 5.32 3.03 -26.83 -0.08 5.24 16 11 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 12 C -0.53 -14.62 8.81 -34.44 -0.30 -14.93 16 13 H 0.06 1.70 7.77 -52.49 -0.41 1.30 16 14 C 0.08 2.17 5.44 -17.82 -0.10 2.08 16 15 N -0.86 -25.04 13.13 55.43 0.73 -24.31 16 16 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 O -0.34 -8.47 9.42 -35.23 -0.33 -8.80 16 21 C -0.15 -2.41 8.71 -39.51 -0.34 -2.75 16 22 C 0.09 1.32 7.24 -39.42 -0.29 1.03 16 23 F -0.15 -2.17 16.48 2.25 0.04 -2.13 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.71 7.64 -51.92 -0.40 0.31 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.14 2.68 7.56 -52.49 -0.40 2.28 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.18 8.11 -51.93 -0.42 0.75 16 32 H 0.07 1.10 5.77 -51.93 -0.30 0.80 16 33 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 34 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.13 1.94 6.44 -52.49 -0.34 1.60 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -29.44 308.83 -7.82 -37.26 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.17 Total: 0.85 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.71 Total: -23.61 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.73 Total: -24.31 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.33 Total: -8.80 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.44 -7.82 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383765056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.706 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds