Wall clock time and date at job start Mon Mar 30 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37991 * 120.01912 * 2 1 4 4 C 1.38254 * 120.20912 * 180.26231 * 3 2 1 5 5 C 1.38857 * 120.25127 * 359.44314 * 4 3 2 6 6 O 1.35910 * 119.98263 * 180.27792 * 5 4 3 7 7 C 1.42898 * 116.99940 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47024 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46944 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46885 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99890 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99989 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99960 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47331 * 60.00022 * 14 12 10 16 16 H 1.48501 * 109.46801 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47198 * 299.99570 * 14 12 10 18 18 C 1.38443 * 120.03578 * 0.25794 * 5 4 3 19 19 C 1.39580 * 119.78466 * 0.02562 * 18 5 4 20 20 C 1.47739 * 120.11713 * 180.02562 * 19 18 5 21 21 O 1.21480 * 119.99871 * 173.76042 * 20 19 18 22 22 O 1.34707 * 120.00309 * 353.75771 * 20 19 18 23 23 H 1.09002 * 109.46953 * 263.72228 * 1 2 3 24 24 H 1.09000 * 109.47461 * 23.71650 * 1 2 3 25 25 H 1.09004 * 109.47695 * 143.72458 * 1 2 3 26 26 H 1.08008 * 119.89499 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.87146 * 179.72279 * 4 3 2 28 28 H 1.08997 * 109.47748 * 300.00555 * 7 6 5 29 29 H 1.09001 * 109.46922 * 60.00472 * 7 6 5 30 30 H 1.08996 * 109.47686 * 300.00421 * 8 7 6 31 31 H 1.08997 * 109.47009 * 60.00944 * 8 7 6 32 32 H 1.09003 * 109.47503 * 299.99819 * 9 8 7 33 33 H 1.08994 * 109.47457 * 60.00176 * 9 8 7 34 34 H 0.96997 * 120.00029 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.10641 * 179.97438 * 18 5 4 36 36 H 0.96697 * 117.00170 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1948 0.0000 4 6 3.5799 1.1994 -0.0055 5 6 4.2834 0.0023 0.0007 6 8 5.6425 0.0132 0.0009 7 6 6.2809 1.2916 -0.0058 8 6 7.7993 1.1033 -0.0038 9 6 8.4829 2.4721 -0.0104 10 6 9.9785 2.2866 -0.0090 11 1 10.3993 1.2920 -0.0043 12 6 10.8096 3.3868 -0.0137 13 7 10.2972 4.5980 -0.0198 14 14 12.6634 3.1569 -0.0127 15 1 13.0686 2.3962 -1.2219 16 1 13.3269 4.4855 -0.0190 17 1 13.0685 2.4066 1.2030 18 6 3.6012 -1.2024 0.0069 19 6 2.2055 -1.2088 0.0065 20 6 1.4700 -2.4901 0.0137 21 8 0.2606 -2.4956 0.1276 22 8 2.1405 -3.6523 -0.1062 23 1 -0.3633 -0.1124 1.0215 24 1 -0.3634 0.9409 -0.4133 25 1 -0.3635 -0.8285 -0.6080 26 1 1.6559 2.1294 0.0004 27 1 4.1146 2.1377 -0.0100 28 1 5.9838 1.8415 -0.8988 29 1 5.9834 1.8510 0.8811 30 1 8.0961 0.5537 0.8894 31 1 8.0972 0.5439 -0.8905 32 1 8.1862 3.0222 -0.9034 33 1 8.1850 3.0313 0.8765 34 1 10.8818 5.3720 -0.0228 35 1 4.1473 -2.1341 0.0112 36 1 1.6162 -4.4647 -0.0958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383937337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:06 Heat of formation + Delta-G solvation = -122.486216 kcal Electronic energy + Delta-G solvation = -18710.062681 eV Core-core repulsion = 15544.951896 eV Total energy + Delta-G solvation = -3165.110786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85543 -39.71336 -37.64815 -36.32814 -34.13705 -32.30837 -31.58327 -31.37518 -27.61979 -26.25690 -24.70861 -23.25521 -22.39001 -20.76688 -20.27841 -18.51954 -17.97212 -16.46859 -16.20433 -16.06061 -15.83827 -15.70777 -15.39831 -14.50042 -13.98630 -13.79149 -13.56302 -13.49737 -13.23136 -12.44505 -12.34145 -12.00536 -11.91459 -11.88143 -11.73665 -11.33214 -11.01961 -10.66156 -10.63683 -10.57000 -10.34670 -9.81458 -9.57656 -9.28989 -9.21886 -8.41960 -8.14923 -6.07359 -4.10216 0.48218 1.25042 2.34257 2.75198 3.30501 3.34234 3.35124 3.40475 3.57319 4.41333 4.57565 4.72283 4.77657 5.03122 5.15468 5.22564 5.28855 5.45279 5.49449 5.55430 5.60546 5.73826 5.81101 5.90846 6.05276 6.19610 6.24781 6.32284 6.47309 6.49110 6.66960 6.93008 7.50425 7.55776 7.65757 7.66105 7.90836 8.32370 8.95760 9.54380 11.04098 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.045036 B = 0.002992 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.575675 B = 9355.967999 C = 9945.085905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.093 4.093 4 C -0.167 4.167 5 C 0.122 3.878 6 O -0.313 6.313 7 C 0.057 3.943 8 C -0.109 4.109 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.097 4.097 19 C -0.100 4.100 20 C 0.530 3.470 21 O -0.510 6.510 22 O -0.510 6.510 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.145 0.855 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 -10.567 -0.181 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.111 4.111 4 C -0.186 4.186 5 C 0.076 3.924 6 O -0.226 6.226 7 C -0.017 4.017 8 C -0.146 4.146 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.116 4.116 19 C -0.101 4.101 20 C 0.376 3.624 21 O -0.400 6.400 22 O -0.322 6.322 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.521 -10.169 -0.157 21.130 hybrid contribution 0.740 -0.241 0.030 0.779 sum -17.781 -10.410 -0.127 20.605 Atomic orbital electron populations 1.21022 0.89962 1.02984 1.03289 1.19861 0.96771 0.91130 0.98752 1.20816 0.93294 0.97454 0.99539 1.21701 0.95268 0.98163 1.03432 1.18954 0.83960 0.93404 0.96110 1.86156 1.14820 1.33999 1.87641 1.23268 0.95418 0.82089 1.00945 1.21731 0.88612 1.02187 1.02094 1.19043 0.95022 0.89610 0.97532 1.21147 0.91137 0.92722 1.51094 0.92472 1.25022 0.99043 0.95212 0.95129 1.69947 1.35329 0.97673 1.50528 0.86603 0.85146 0.77237 0.78718 1.20157 1.21245 1.20152 1.20657 0.92186 0.97479 1.01298 1.18554 0.92460 0.89887 1.09200 1.20844 0.85258 0.84227 0.72120 1.90843 1.15186 1.87688 1.46280 1.84601 1.45349 1.17052 1.85152 0.90902 0.92138 0.89336 0.84754 0.84274 0.92173 0.92188 0.92100 0.92095 0.96302 0.96298 0.92823 0.83708 0.72840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.72 36.00 0.31 -0.84 16 2 C -0.06 -0.74 5.92 -104.20 -0.62 -1.35 16 3 C -0.09 -1.02 9.65 -39.67 -0.38 -1.40 16 4 C -0.17 -2.09 9.03 -39.35 -0.36 -2.44 16 5 C 0.12 1.73 6.68 -39.28 -0.26 1.46 16 6 O -0.31 -5.09 10.13 -19.46 -0.20 -5.29 16 7 C 0.06 0.95 4.74 37.16 0.18 1.13 16 8 C -0.11 -2.18 5.52 -26.73 -0.15 -2.33 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 14 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.10 -1.25 9.55 -39.01 -0.37 -1.63 16 19 C -0.10 -1.21 5.87 -105.00 -0.62 -1.83 16 20 C 0.53 5.93 8.20 34.61 0.28 6.21 16 21 O -0.51 -6.39 14.12 -19.25 -0.27 -6.66 16 22 O -0.51 -4.35 12.70 -40.51 -0.51 -4.86 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.48 8.04 -51.93 -0.42 0.07 16 25 H 0.09 0.97 5.85 -51.93 -0.30 0.66 16 26 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 27 H 0.14 1.63 6.28 -52.49 -0.33 1.30 16 28 H 0.06 0.95 7.66 -51.93 -0.40 0.55 16 29 H 0.06 0.94 7.66 -51.93 -0.40 0.55 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.15 1.74 7.63 -52.49 -0.40 1.34 16 36 H 0.41 1.50 9.11 45.56 0.42 1.92 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -31.55 311.57 -7.01 -38.56 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.91 Total: -1.30 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.53 Total: -15.84 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.98 Total: -16.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.55 -7.01 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383937337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.922 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds