Wall clock time and date at job start Mon Mar 30 2020 06:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37991 * 120.01912 * 2 1 4 4 C 1.38254 * 120.20912 * 180.26231 * 3 2 1 5 5 C 1.38857 * 120.25127 * 359.44314 * 4 3 2 6 6 O 1.35910 * 119.98263 * 180.27792 * 5 4 3 7 7 C 1.42898 * 116.99940 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47024 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46944 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46885 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99890 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99989 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99960 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47331 * 60.00022 * 14 12 10 16 16 H 1.48501 * 109.46801 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47198 * 299.99570 * 14 12 10 18 18 C 1.38443 * 120.03578 * 0.25794 * 5 4 3 19 19 C 1.39580 * 119.78466 * 0.02562 * 18 5 4 20 20 C 1.47739 * 120.11713 * 180.02562 * 19 18 5 21 21 O 1.21480 * 119.99871 * 173.76042 * 20 19 18 22 22 O 1.34707 * 120.00309 * 353.75771 * 20 19 18 23 23 H 1.09002 * 109.46953 * 263.72228 * 1 2 3 24 24 H 1.09000 * 109.47461 * 23.71650 * 1 2 3 25 25 H 1.09004 * 109.47695 * 143.72458 * 1 2 3 26 26 H 1.08008 * 119.89499 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.87146 * 179.72279 * 4 3 2 28 28 H 1.08997 * 109.47748 * 300.00555 * 7 6 5 29 29 H 1.09001 * 109.46922 * 60.00472 * 7 6 5 30 30 H 1.08996 * 109.47686 * 300.00421 * 8 7 6 31 31 H 1.08997 * 109.47009 * 60.00944 * 8 7 6 32 32 H 1.09003 * 109.47503 * 299.99819 * 9 8 7 33 33 H 1.08994 * 109.47457 * 60.00176 * 9 8 7 34 34 H 0.96997 * 120.00029 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.10641 * 179.97438 * 18 5 4 36 36 H 0.96697 * 117.00170 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1948 0.0000 4 6 3.5799 1.1994 -0.0055 5 6 4.2834 0.0023 0.0007 6 8 5.6425 0.0132 0.0009 7 6 6.2809 1.2916 -0.0058 8 6 7.7993 1.1033 -0.0038 9 6 8.4829 2.4721 -0.0104 10 6 9.9785 2.2866 -0.0090 11 1 10.3993 1.2920 -0.0043 12 6 10.8096 3.3868 -0.0137 13 7 10.2972 4.5980 -0.0198 14 14 12.6634 3.1569 -0.0127 15 1 13.0686 2.3962 -1.2219 16 1 13.3269 4.4855 -0.0190 17 1 13.0685 2.4066 1.2030 18 6 3.6012 -1.2024 0.0069 19 6 2.2055 -1.2088 0.0065 20 6 1.4700 -2.4901 0.0137 21 8 0.2606 -2.4956 0.1276 22 8 2.1405 -3.6523 -0.1062 23 1 -0.3633 -0.1124 1.0215 24 1 -0.3634 0.9409 -0.4133 25 1 -0.3635 -0.8285 -0.6080 26 1 1.6559 2.1294 0.0004 27 1 4.1146 2.1377 -0.0100 28 1 5.9838 1.8415 -0.8988 29 1 5.9834 1.8510 0.8811 30 1 8.0961 0.5537 0.8894 31 1 8.0972 0.5439 -0.8905 32 1 8.1862 3.0222 -0.9034 33 1 8.1850 3.0313 0.8765 34 1 10.8818 5.3720 -0.0228 35 1 4.1473 -2.1341 0.0112 36 1 1.6162 -4.4647 -0.0958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383937337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:05 Heat of formation + Delta-G solvation = -141.410768 kcal Electronic energy + Delta-G solvation = -18710.883312 eV Core-core repulsion = 15544.951896 eV Total energy + Delta-G solvation = -3165.931416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75670 -40.72263 -38.67316 -37.14747 -35.98965 -33.86450 -32.70509 -32.49780 -29.14312 -27.48457 -25.75551 -24.85584 -23.32111 -22.12402 -21.60402 -19.48790 -18.88978 -18.45865 -17.23288 -17.13958 -16.96632 -16.67995 -16.52111 -16.31746 -15.06560 -14.92334 -14.73600 -14.36812 -14.30836 -14.18799 -13.70772 -13.25421 -13.15346 -12.96967 -12.74258 -12.56983 -12.52704 -12.47807 -12.06197 -11.96145 -11.54886 -11.43334 -11.25106 -11.20952 -10.55657 -10.21333 -9.16437 -8.21681 -6.32278 -0.43713 0.30263 1.41684 1.44102 1.45896 1.52043 1.94460 2.24174 2.43325 2.63704 3.12356 3.68732 3.83014 3.89009 4.04715 4.06178 4.21317 4.24923 4.40681 4.46172 4.71940 4.81203 4.83787 4.84112 4.93863 4.97330 5.10289 5.21762 5.27010 5.45042 5.48222 5.52167 5.67390 5.69980 5.81554 6.20173 6.38315 6.83152 6.95908 7.36969 8.89997 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.045036 B = 0.002992 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.575675 B = 9355.967999 C = 9945.085905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.065 4.065 3 C -0.088 4.088 4 C -0.170 4.170 5 C 0.096 3.904 6 O -0.327 6.327 7 C 0.069 3.931 8 C -0.098 4.098 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.964 3.036 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.100 4.100 19 C -0.111 4.111 20 C 0.534 3.466 21 O -0.526 6.526 22 O -0.506 6.506 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.148 0.852 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 -11.089 -0.206 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.106 4.106 4 C -0.189 4.189 5 C 0.051 3.949 6 O -0.242 6.242 7 C -0.006 4.006 8 C -0.135 4.135 9 C -0.008 4.008 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.788 3.212 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.119 4.119 19 C -0.112 4.112 20 C 0.380 3.620 21 O -0.418 6.418 22 O -0.321 6.321 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.163 0.837 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -19.125 -10.733 -0.183 21.932 hybrid contribution 0.819 -0.138 0.035 0.831 sum -18.306 -10.871 -0.149 21.291 Atomic orbital electron populations 1.21017 0.88715 1.03802 1.03347 1.20191 0.97743 0.91103 0.97566 1.21131 0.92693 0.98550 0.98191 1.21855 0.96089 0.97788 1.03180 1.19152 0.83011 0.94597 0.98176 1.86073 1.16322 1.33260 1.88525 1.22938 0.93182 0.82654 1.01800 1.21437 0.91029 0.99165 1.01903 1.18907 0.94426 0.91789 0.95705 1.21623 0.92867 0.93014 1.50988 0.92185 1.25935 1.04159 0.94870 0.94615 1.70066 1.37138 0.98495 1.51388 0.85513 0.79041 0.77417 0.79179 1.19242 1.20764 1.19235 1.20707 0.92595 0.97276 1.01322 1.18766 0.92263 0.90960 1.09220 1.20675 0.84883 0.84619 0.71802 1.90842 1.15712 1.88036 1.47187 1.84557 1.45580 1.17454 1.84472 0.90705 0.89923 0.90335 0.81830 0.83696 0.91352 0.91386 0.92263 0.92247 0.98070 0.98071 0.92642 0.83456 0.70353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.72 71.24 0.62 -1.36 16 2 C -0.07 -1.38 5.92 -19.59 -0.12 -1.49 16 3 C -0.09 -1.72 9.65 22.21 0.21 -1.51 16 4 C -0.17 -4.03 9.03 22.42 0.20 -3.83 16 5 C 0.10 2.65 6.68 22.47 0.15 2.80 16 6 O -0.33 -10.56 10.13 -92.54 -0.94 -11.49 16 7 C 0.07 2.27 4.74 71.98 0.34 2.61 16 8 C -0.10 -3.95 5.52 30.59 0.17 -3.78 16 9 C 0.03 1.47 4.97 29.85 0.15 1.61 16 10 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 12 C 0.00 0.13 5.46 84.65 0.46 0.60 16 13 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 14 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.10 -2.51 9.55 22.64 0.22 -2.30 16 19 C -0.11 -2.56 5.87 -20.11 -0.12 -2.68 16 20 C 0.53 11.27 8.20 70.33 0.58 11.85 16 21 O -0.53 -12.50 14.12 19.90 0.28 -12.22 16 22 O -0.51 -7.86 12.70 -56.17 -0.71 -8.58 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 25 H 0.08 1.58 5.85 -2.38 -0.01 1.57 16 26 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 27 H 0.15 3.20 6.28 -2.91 -0.02 3.18 16 28 H 0.07 2.12 7.66 -2.39 -0.02 2.11 16 29 H 0.07 2.12 7.66 -2.39 -0.02 2.10 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.15 3.49 7.63 -2.91 -0.02 3.47 16 36 H 0.43 2.35 9.11 -74.06 -0.67 1.68 16 Total: -1.00 -67.07 311.57 4.47 -62.60 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.42 Total: 7.04 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.10 Total: -27.87 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.37 Total: -32.29 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.07 4.47 -62.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383937337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.809 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds