Wall clock time and date at job start Mon Mar 30 2020 07:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38125 * 119.96148 * 2 1 4 4 C 1.38893 * 119.92143 * 179.74781 * 3 2 1 5 5 N 1.39668 * 120.07375 * 180.30279 * 4 3 2 6 6 C 1.46900 * 110.99962 * 296.27716 * 5 4 3 7 7 C 1.46901 * 111.00569 * 60.23004 * 5 4 3 8 8 C 1.50693 * 109.47408 * 169.99860 * 7 5 4 9 9 H 1.07998 * 120.00404 * 0.02562 * 8 7 5 10 10 C 1.37884 * 119.99895 * 179.97438 * 8 7 5 11 11 N 1.31513 * 119.99952 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99902 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46788 * 90.00039 * 12 10 8 14 14 H 1.48494 * 109.46851 * 209.99683 * 12 10 8 15 15 H 1.48493 * 109.47012 * 329.99674 * 12 10 8 16 16 C 1.38935 * 119.84916 * 0.53050 * 4 3 2 17 17 N 1.48007 * 120.03514 * 179.76928 * 16 4 3 18 18 O 1.21803 * 120.00054 * 179.97438 * 17 16 4 19 19 O 1.21798 * 119.99971 * 359.97438 * 17 16 4 20 20 C 1.38079 * 119.92704 * 359.74604 * 16 4 3 21 21 C 1.38268 * 119.95963 * 180.28082 * 2 1 3 22 22 C 1.50693 * 119.92686 * 359.95508 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.71934 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72035 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72016 * 1 2 3 26 26 H 1.07998 * 120.03896 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47301 * 60.00316 * 6 5 4 28 28 H 1.08998 * 109.47129 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46829 * 299.99885 * 6 5 4 30 30 H 1.09000 * 109.47024 * 290.00676 * 7 5 4 31 31 H 1.09003 * 109.46695 * 50.00010 * 7 5 4 32 32 H 0.96997 * 120.00368 * 179.97438 * 11 10 8 33 33 H 1.08006 * 119.96365 * 179.97438 * 20 16 4 34 34 H 1.09005 * 109.47086 * 90.00425 * 22 21 2 35 35 H 1.08999 * 109.46915 * 209.99885 * 22 21 2 36 36 H 1.09004 * 109.47111 * 330.00004 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1967 0.0000 4 6 3.5858 1.1957 0.0053 5 7 4.2865 2.4039 0.0117 6 6 4.0301 3.1677 -1.2166 7 6 3.9571 3.1973 1.2033 8 6 4.9016 4.3671 1.3048 9 1 5.6696 4.5075 0.5585 10 6 4.7848 5.2589 2.3499 11 7 5.6094 6.2795 2.4387 12 14 3.4560 5.0166 3.6403 13 1 3.9853 4.1754 4.7438 14 1 3.0427 6.3371 4.1791 15 1 2.2841 4.3446 3.0239 16 6 4.2765 -0.0098 -0.0006 17 7 5.7565 -0.0156 -0.0001 18 8 6.3614 -1.0728 -0.0048 19 8 6.3696 1.0368 0.0049 20 6 3.5806 -1.2024 -0.0063 21 6 2.1975 -1.1979 -0.0059 22 6 1.4415 -2.5014 -0.0112 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5182 25 1 -0.3633 0.8925 -0.5095 26 1 1.6569 2.1320 0.0004 27 1 2.9643 3.3822 -1.2953 28 1 4.5881 4.1034 -1.1858 29 1 4.3480 2.5838 -2.0805 30 1 2.9332 3.5627 1.1249 31 1 4.0534 2.5744 2.0926 32 1 5.5270 6.9071 3.1737 33 1 4.1169 -2.1399 -0.0113 34 1 1.2585 -2.8111 -1.0402 35 1 2.0294 -3.2645 0.4987 36 1 0.4896 -2.3715 0.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384123238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:11 Heat of formation + Delta-G solvation = 34.276945 kcal Electronic energy + Delta-G solvation = -20312.987661 eV Core-core repulsion = 17186.967387 eV Total energy + Delta-G solvation = -3126.020274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59388 -39.95402 -37.12875 -35.70626 -33.40353 -32.63806 -31.70677 -28.49987 -28.14700 -27.12678 -25.26436 -24.04626 -22.71450 -21.25764 -20.12736 -18.33944 -17.92422 -16.91043 -16.84505 -16.11078 -15.63251 -14.86371 -14.54476 -14.37764 -14.10766 -13.77433 -13.33967 -13.13338 -12.83042 -12.45846 -12.42224 -12.05778 -11.93255 -11.73957 -11.43781 -11.21818 -10.86901 -10.68971 -10.66010 -10.46218 -10.38435 -10.04437 -9.40151 -9.21851 -8.71488 -8.62912 -7.76189 -6.09546 -4.07727 0.24010 0.99018 1.78053 2.00335 3.22402 3.28476 3.30152 3.31288 4.14874 4.35530 4.40598 4.50871 4.70718 4.81428 5.02782 5.19848 5.23700 5.28100 5.30989 5.33056 5.50448 5.60035 5.69769 5.78415 5.87485 5.91210 6.05837 6.20000 6.40964 6.49969 6.63233 6.75106 6.98265 7.44108 7.56071 7.84723 8.35127 8.55586 9.01953 9.49735 11.03180 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.007162 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.992937 B = 3908.392772 C = 4785.080410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.032 4.032 3 C -0.156 4.156 4 C 0.178 3.822 5 N -0.493 5.493 6 C 0.044 3.956 7 C 0.172 3.828 8 C -0.508 4.508 9 H 0.089 0.911 10 C 0.073 3.927 11 N -0.893 5.893 12 Si 0.869 3.131 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.270 1.270 16 C -0.036 4.036 17 N 0.026 4.974 18 O -0.224 6.224 19 O -0.073 6.073 20 C -0.053 4.053 21 C -0.106 4.106 22 C -0.110 4.110 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.142 0.858 27 H 0.020 0.980 28 H 0.097 0.903 29 H 0.050 0.950 30 H -0.004 1.004 31 H 0.022 0.978 32 H 0.265 0.735 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 -14.743 -5.965 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.033 4.033 3 C -0.177 4.177 4 C 0.081 3.919 5 N -0.215 5.215 6 C -0.102 4.102 7 C 0.048 3.952 8 C -0.546 4.546 9 H 0.107 0.893 10 C -0.130 4.130 11 N -0.532 5.532 12 Si 0.696 3.304 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.195 1.195 16 C -0.121 4.121 17 N 0.547 4.453 18 O -0.421 6.421 19 O -0.310 6.310 20 C -0.073 4.073 21 C -0.107 4.107 22 C -0.167 4.167 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.160 0.840 27 H 0.038 0.962 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.013 0.987 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.623 -14.829 -5.831 20.328 hybrid contribution -1.043 0.209 0.883 1.382 sum -13.666 -14.620 -4.949 20.615 Atomic orbital electron populations 1.20953 0.90237 1.03517 1.03134 1.20055 0.96768 0.92169 0.94286 1.21806 0.93699 0.98981 1.03187 1.19001 0.90288 0.92129 0.90484 1.59903 1.54104 1.02241 1.05208 1.22312 0.98885 0.99435 0.89523 1.20285 0.95628 0.93023 0.86250 1.20926 1.15964 1.05948 1.11744 0.89268 1.24839 0.95722 0.95058 0.97334 1.69870 1.37103 1.14249 1.31966 0.86964 0.82817 0.77806 0.82772 1.20103 1.20941 1.19489 1.21188 0.80279 0.95292 1.15339 1.43387 1.03036 1.00547 0.98286 1.94451 1.69248 1.21119 1.57238 1.94723 1.67953 1.19981 1.48314 1.20775 0.93817 0.96931 0.95735 1.19621 0.92118 0.95730 1.03259 1.20789 1.00014 0.93184 1.02701 0.90193 0.90618 0.90804 0.84023 0.96165 0.88460 0.93101 0.98666 0.95979 0.92511 0.83335 0.90793 0.91077 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.19 36.01 0.33 -0.67 16 2 C -0.03 -0.38 5.88 -104.65 -0.62 -0.99 16 3 C -0.16 -2.34 8.31 -39.38 -0.33 -2.66 16 4 C 0.18 3.25 4.67 -83.79 -0.39 2.86 16 5 N -0.49 -10.45 2.60 -180.33 -0.47 -10.92 16 6 C 0.04 0.83 9.20 60.06 0.55 1.38 16 7 C 0.17 4.11 3.38 -4.98 -0.02 4.10 16 8 C -0.51 -14.20 9.01 -34.44 -0.31 -14.51 16 9 H 0.09 2.72 7.37 -52.49 -0.39 2.33 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 12 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 16 C -0.04 -0.65 6.87 -79.75 -0.55 -1.20 16 17 N 0.03 0.53 4.45 34.06 0.15 0.68 16 18 O -0.22 -4.44 18.45 -29.46 -0.54 -4.98 16 19 O -0.07 -1.68 17.10 -29.46 -0.50 -2.18 16 20 C -0.05 -0.74 9.20 -39.61 -0.36 -1.10 16 21 C -0.11 -1.22 5.88 -104.59 -0.62 -1.83 16 22 C -0.11 -0.83 9.19 36.00 0.33 -0.50 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.47 6.69 -51.93 -0.35 0.13 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.14 2.04 7.14 -52.49 -0.37 1.67 16 27 H 0.02 0.33 7.33 -51.93 -0.38 -0.05 16 28 H 0.10 1.98 6.76 -51.93 -0.35 1.62 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.00 -0.10 6.54 -51.93 -0.34 -0.44 16 31 H 0.02 0.55 7.49 -51.93 -0.39 0.17 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.15 1.82 7.61 -52.48 -0.40 1.42 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 0.46 6.69 -51.93 -0.35 0.11 16 LS Contribution 303.54 15.07 4.57 4.57 Total: -1.00 -31.99 303.54 -7.35 -39.34 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.59 Total: -3.53 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.07 Total: -13.16 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.46 Total: -36.50 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -1.05 Total: -7.16 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.99 -7.35 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384123238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.616 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds