Wall clock time and date at job start Mon Mar 30 2020 07:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38125 * 119.96148 * 2 1 4 4 C 1.38893 * 119.92143 * 179.74781 * 3 2 1 5 5 N 1.39668 * 120.07375 * 180.30279 * 4 3 2 6 6 C 1.46900 * 110.99962 * 296.27716 * 5 4 3 7 7 C 1.46901 * 111.00569 * 60.23004 * 5 4 3 8 8 C 1.50693 * 109.47408 * 169.99860 * 7 5 4 9 9 H 1.07998 * 120.00404 * 0.02562 * 8 7 5 10 10 C 1.37884 * 119.99895 * 179.97438 * 8 7 5 11 11 N 1.31513 * 119.99952 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99902 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46788 * 90.00039 * 12 10 8 14 14 H 1.48494 * 109.46851 * 209.99683 * 12 10 8 15 15 H 1.48493 * 109.47012 * 329.99674 * 12 10 8 16 16 C 1.38935 * 119.84916 * 0.53050 * 4 3 2 17 17 N 1.48007 * 120.03514 * 179.76928 * 16 4 3 18 18 O 1.21803 * 120.00054 * 179.97438 * 17 16 4 19 19 O 1.21798 * 119.99971 * 359.97438 * 17 16 4 20 20 C 1.38079 * 119.92704 * 359.74604 * 16 4 3 21 21 C 1.38268 * 119.95963 * 180.28082 * 2 1 3 22 22 C 1.50693 * 119.92686 * 359.95508 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.71934 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72035 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72016 * 1 2 3 26 26 H 1.07998 * 120.03896 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47301 * 60.00316 * 6 5 4 28 28 H 1.08998 * 109.47129 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46829 * 299.99885 * 6 5 4 30 30 H 1.09000 * 109.47024 * 290.00676 * 7 5 4 31 31 H 1.09003 * 109.46695 * 50.00010 * 7 5 4 32 32 H 0.96997 * 120.00368 * 179.97438 * 11 10 8 33 33 H 1.08006 * 119.96365 * 179.97438 * 20 16 4 34 34 H 1.09005 * 109.47086 * 90.00425 * 22 21 2 35 35 H 1.08999 * 109.46915 * 209.99885 * 22 21 2 36 36 H 1.09004 * 109.47111 * 330.00004 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1967 0.0000 4 6 3.5858 1.1957 0.0053 5 7 4.2865 2.4039 0.0117 6 6 4.0301 3.1677 -1.2166 7 6 3.9571 3.1973 1.2033 8 6 4.9016 4.3671 1.3048 9 1 5.6696 4.5075 0.5585 10 6 4.7848 5.2589 2.3499 11 7 5.6094 6.2795 2.4387 12 14 3.4560 5.0166 3.6403 13 1 3.9853 4.1754 4.7438 14 1 3.0427 6.3371 4.1791 15 1 2.2841 4.3446 3.0239 16 6 4.2765 -0.0098 -0.0006 17 7 5.7565 -0.0156 -0.0001 18 8 6.3614 -1.0728 -0.0048 19 8 6.3696 1.0368 0.0049 20 6 3.5806 -1.2024 -0.0063 21 6 2.1975 -1.1979 -0.0059 22 6 1.4415 -2.5014 -0.0112 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5182 25 1 -0.3633 0.8925 -0.5095 26 1 1.6569 2.1320 0.0004 27 1 2.9643 3.3822 -1.2953 28 1 4.5881 4.1034 -1.1858 29 1 4.3480 2.5838 -2.0805 30 1 2.9332 3.5627 1.1249 31 1 4.0534 2.5744 2.0926 32 1 5.5270 6.9071 3.1737 33 1 4.1169 -2.1399 -0.0113 34 1 1.2585 -2.8111 -1.0402 35 1 2.0294 -3.2645 0.4987 36 1 0.4896 -2.3715 0.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384123238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:10 Heat of formation + Delta-G solvation = 15.093991 kcal Electronic energy + Delta-G solvation = -20313.819496 eV Core-core repulsion = 17186.967387 eV Total energy + Delta-G solvation = -3126.852109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.06617 -41.19534 -38.52191 -37.26963 -34.93070 -34.24563 -32.86794 -30.13082 -29.46551 -28.25260 -26.63714 -25.48821 -23.97547 -22.82165 -21.53791 -19.77945 -19.42779 -18.79786 -18.37251 -17.37364 -16.93348 -16.65353 -15.80795 -15.53903 -15.21292 -15.14546 -14.76905 -14.46570 -13.74065 -13.64586 -13.46424 -13.31384 -13.11807 -12.84282 -12.67264 -12.61536 -12.46782 -12.45645 -12.27151 -12.02058 -12.00131 -11.93033 -11.57495 -10.82864 -10.31189 -9.80640 -9.32153 -8.30388 -6.34873 -1.11773 -0.11307 0.39953 0.62493 1.29022 1.31850 1.40924 2.19164 2.29799 2.74597 3.01425 3.41733 3.59106 3.76548 3.83371 3.89244 4.26233 4.39256 4.44099 4.47513 4.60440 4.62558 4.71975 4.76033 4.83378 4.86783 4.99268 5.04096 5.09922 5.15265 5.27581 5.40723 5.43278 5.59171 5.82370 6.15626 6.54565 6.71783 6.74167 7.26775 8.86234 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.007162 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.992937 B = 3908.392772 C = 4785.080410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.014 4.014 3 C -0.162 4.162 4 C 0.146 3.854 5 N -0.515 5.515 6 C 0.051 3.949 7 C 0.189 3.811 8 C -0.515 4.515 9 H 0.041 0.959 10 C 0.011 3.989 11 N -0.943 5.943 12 Si 0.943 3.057 13 H -0.274 1.274 14 H -0.275 1.275 15 H -0.243 1.243 16 C -0.062 4.062 17 N 0.032 4.968 18 O -0.191 6.191 19 O -0.167 6.167 20 C -0.052 4.052 21 C -0.089 4.089 22 C -0.111 4.111 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.268 0.732 33 H 0.167 0.833 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 -18.055 -5.607 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.015 4.015 3 C -0.182 4.182 4 C 0.050 3.950 5 N -0.237 5.237 6 C -0.095 4.095 7 C 0.064 3.936 8 C -0.554 4.554 9 H 0.060 0.940 10 C -0.186 4.186 11 N -0.583 5.583 12 Si 0.766 3.234 13 H -0.199 1.199 14 H -0.200 1.200 15 H -0.167 1.167 16 C -0.147 4.147 17 N 0.546 4.454 18 O -0.402 6.402 19 O -0.382 6.382 20 C -0.071 4.071 21 C -0.090 4.090 22 C -0.167 4.167 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.099 0.901 26 H 0.164 0.836 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.184 0.816 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.161 -17.985 -5.501 25.460 hybrid contribution 0.304 0.966 0.666 1.212 sum -16.857 -17.019 -4.835 24.437 Atomic orbital electron populations 1.21122 0.86775 1.05403 1.04568 1.20550 0.99030 0.90935 0.91033 1.21888 0.92046 1.00750 1.03545 1.19058 0.91699 0.90611 0.93662 1.59547 1.56203 1.03279 1.04648 1.22209 0.99738 0.98116 0.89410 1.19918 0.94781 0.91483 0.87417 1.21123 1.15707 1.07795 1.10746 0.94031 1.25802 0.98494 0.94480 0.99869 1.70038 1.39536 1.15564 1.33208 0.85794 0.80164 0.78234 0.79254 1.19938 1.20039 1.16664 1.21463 0.77967 0.96906 1.18343 1.43846 1.04559 0.99936 0.97104 1.94371 1.70432 1.20856 1.54517 1.94750 1.69373 1.20541 1.53515 1.21150 0.95049 0.95945 0.94953 1.20170 0.91066 0.97672 1.00050 1.20966 1.00490 0.90736 1.04510 0.88631 0.87736 0.90089 0.83574 0.93853 0.91587 0.91855 0.97287 0.97099 0.92279 0.81561 0.88705 0.90019 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.19 71.24 0.65 -0.60 16 2 C -0.01 -0.28 5.88 -19.88 -0.12 -0.39 16 3 C -0.16 -4.45 8.31 22.40 0.19 -4.26 16 4 C 0.15 5.30 4.67 38.22 0.18 5.48 16 5 N -0.52 -22.80 2.60 -724.45 -1.88 -24.69 16 6 C 0.05 2.00 9.20 127.69 1.17 3.18 16 7 C 0.19 9.27 3.38 85.55 0.29 9.56 16 8 C -0.52 -30.56 9.01 25.60 0.23 -30.33 16 9 H 0.04 2.78 7.37 -2.91 -0.02 2.76 16 10 C 0.01 0.67 5.47 84.66 0.46 1.13 16 11 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 12 Si 0.94 43.89 27.47 68.60 1.88 45.78 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 15 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 16 C -0.06 -2.18 6.87 36.51 0.25 -1.93 16 17 N 0.03 1.34 4.45 -46.16 -0.21 1.14 16 18 O -0.19 -7.60 18.45 18.88 0.35 -7.26 16 19 O -0.17 -8.33 17.10 18.89 0.32 -8.01 16 20 C -0.05 -1.29 9.20 22.25 0.20 -1.08 16 21 C -0.09 -1.60 5.88 -19.84 -0.12 -1.72 16 22 C -0.11 -0.96 9.19 71.23 0.65 -0.30 16 23 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.10 0.54 6.69 -2.39 -0.02 0.53 16 25 H 0.08 0.80 8.08 -2.38 -0.02 0.78 16 26 H 0.15 3.82 7.14 -2.91 -0.02 3.80 16 27 H 0.04 1.45 7.33 -2.39 -0.02 1.43 16 28 H 0.07 2.94 6.76 -2.39 -0.02 2.92 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.01 0.44 6.54 -2.39 -0.02 0.42 16 31 H 0.01 0.56 7.49 -2.39 -0.02 0.54 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.17 3.50 7.61 -2.91 -0.02 3.47 16 34 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 36 H 0.10 0.48 6.69 -2.39 -0.02 0.47 16 Total: -1.00 -76.44 303.54 5.85 -70.59 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.03 Total: 3.17 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.05 Total: -21.27 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.79 Total: -83.01 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.67 Total: -15.27 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Total: -76.44 5.85 -70.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384123238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.688 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds