Wall clock time and date at job start Mon Mar 30 2020 07:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38215 * 120.01352 * 2 1 4 4 C 1.38226 * 120.02916 * 179.72574 * 3 2 1 5 5 C 1.38271 * 120.04733 * 359.97363 * 4 3 2 6 6 C 1.38176 * 120.02826 * 0.05183 * 5 4 3 7 7 C 1.50697 * 120.01409 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.54799 * 213.57126 * 7 6 5 9 9 C 1.54999 * 110.61885 * 90.52201 * 7 6 5 10 10 C 1.54812 * 102.08970 * 204.47720 * 9 7 6 11 11 C 1.54101 * 104.19015 * 20.87783 * 10 9 7 12 12 C 1.53004 * 109.87935 * 242.60659 * 11 10 9 13 13 C 1.50700 * 110.00313 * 121.52792 * 11 10 9 14 14 H 1.07999 * 119.99845 * 28.93601 * 13 11 10 15 15 C 1.37876 * 119.99594 * 208.94318 * 13 11 10 16 16 N 1.31525 * 119.99595 * 173.81109 * 15 13 11 17 17 Si 1.86794 * 120.00342 * 353.81381 * 15 13 11 18 18 H 1.48499 * 109.46963 * 86.95714 * 17 15 13 19 19 H 1.48505 * 109.47217 * 206.95760 * 17 15 13 20 20 H 1.48499 * 109.47315 * 326.95555 * 17 15 13 21 21 O 1.43745 * 107.29526 * 2.03183 * 11 10 9 22 22 C 1.38440 * 120.01102 * 179.72484 * 2 1 3 23 23 F 1.35093 * 120.02953 * 0.25209 * 22 2 1 24 24 H 1.09003 * 109.47582 * 90.00084 * 1 2 3 25 25 H 1.09001 * 109.47137 * 210.00146 * 1 2 3 26 26 H 1.08994 * 109.47312 * 329.99942 * 1 2 3 27 27 H 1.07998 * 119.98744 * 359.74382 * 3 2 1 28 28 H 1.07998 * 119.97574 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.98530 * 180.02562 * 5 4 3 30 30 H 1.09004 * 110.90636 * 322.66915 * 9 7 6 31 31 H 1.09001 * 110.90916 * 86.27801 * 9 7 6 32 32 H 1.09000 * 110.48391 * 262.20154 * 10 9 7 33 33 H 1.09000 * 110.48887 * 139.55636 * 10 9 7 34 34 H 1.09003 * 109.46838 * 176.30421 * 12 11 10 35 35 H 1.08995 * 109.47013 * 296.30354 * 12 11 10 36 36 H 1.08996 * 109.47042 * 56.30427 * 12 11 10 37 37 H 0.97000 * 119.99794 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5805 1.1972 0.0057 5 6 4.2732 0.0005 0.0120 6 6 3.5842 -1.1972 0.0115 7 6 4.3394 -2.5013 0.0178 8 1 3.7978 -3.2598 -0.5474 9 6 4.5950 -2.9771 1.4706 10 6 5.8434 -3.8770 1.3023 11 6 6.4686 -3.4108 -0.0268 12 6 6.4585 -4.5593 -1.0376 13 6 7.8829 -2.9445 0.2044 14 1 8.4667 -3.3685 1.0080 15 6 8.4313 -1.9764 -0.6100 16 7 9.6188 -1.4819 -0.3357 17 14 7.4879 -1.3673 -2.1027 18 1 6.5873 -0.2574 -1.6999 19 1 8.4451 -0.8807 -3.1285 20 1 6.6814 -2.4795 -2.6663 21 8 5.6687 -2.3215 -0.5166 22 6 2.1993 -1.1988 0.0058 23 9 1.5247 -2.3692 0.0062 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6583 2.1321 -0.0042 28 1 4.1199 2.1329 0.0061 29 1 5.3531 0.0020 0.0169 30 1 4.8101 -2.1319 2.1246 31 1 3.7486 -3.5522 1.8461 32 1 5.5522 -4.9255 1.2399 33 1 6.5395 -3.7218 2.1265 34 1 6.8413 -4.2045 -1.9946 35 1 7.0885 -5.3703 -0.6724 36 1 5.4384 -4.9213 -1.1661 37 1 10.0048 -0.8011 -0.9088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384665900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:36 Heat of formation + Delta-G solvation = -73.628651 kcal Electronic energy + Delta-G solvation = -20679.308899 eV Core-core repulsion = 17528.689526 eV Total energy + Delta-G solvation = -3150.619373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.75857 -39.53460 -38.30912 -33.54933 -32.38056 -31.47919 -31.21524 -29.42911 -26.88270 -25.76695 -24.72090 -22.24459 -21.67034 -20.25522 -19.34720 -17.46835 -17.05956 -16.34967 -15.74591 -15.57010 -15.03054 -14.52492 -13.93671 -13.67116 -13.43957 -13.38353 -13.16957 -13.06476 -12.54296 -12.46046 -12.12755 -12.07951 -11.91362 -11.47747 -11.30649 -11.06061 -10.96141 -10.53454 -10.32738 -10.11856 -9.88237 -9.60362 -9.02538 -8.80485 -8.47626 -8.44351 -8.25141 -6.05220 -4.13109 1.29773 1.36415 3.42444 3.56425 3.68827 3.74124 4.33475 4.50975 4.66131 4.77269 5.03281 5.09278 5.24869 5.30136 5.40947 5.46305 5.49001 5.55457 5.61380 5.75694 5.90432 6.01123 6.11226 6.17866 6.23298 6.30631 6.37472 6.48423 6.55922 6.62796 6.63860 6.66202 6.79980 6.90478 7.07779 7.37693 7.65276 8.03433 8.47658 8.90377 9.58967 11.04381 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.007575 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.215856 B = 3695.571487 C = 4320.967450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.130 4.130 5 C -0.070 4.070 6 C -0.101 4.101 7 C 0.113 3.887 8 H 0.070 0.930 9 C -0.136 4.136 10 C -0.132 4.132 11 C 0.195 3.805 12 C -0.155 4.155 13 C -0.518 4.518 14 H 0.081 0.919 15 C 0.082 3.918 16 N -0.898 5.898 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.316 1.316 20 H -0.260 1.260 21 O -0.363 6.363 22 C 0.097 3.903 23 F -0.139 7.139 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 2.697 1.206 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.148 4.148 5 C -0.088 4.088 6 C -0.102 4.102 7 C 0.055 3.945 8 H 0.088 0.912 9 C -0.174 4.174 10 C -0.170 4.170 11 C 0.157 3.843 12 C -0.213 4.213 13 C -0.555 4.555 14 H 0.099 0.901 15 C -0.122 4.122 16 N -0.534 5.534 17 Si 0.749 3.251 18 H -0.203 1.203 19 H -0.246 1.246 20 H -0.186 1.186 21 O -0.284 6.284 22 C 0.078 3.922 23 F -0.118 7.118 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.165 0.835 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.035 2.919 1.039 16.332 hybrid contribution -0.499 0.041 -0.689 0.852 sum -16.534 2.960 0.350 16.801 Atomic orbital electron populations 1.20661 0.90438 1.02959 1.02474 1.19791 0.96644 0.91881 1.04692 1.20853 0.94150 0.96663 1.00202 1.21248 0.94035 0.98476 1.01007 1.21274 1.01952 0.90459 0.95077 1.19899 0.91201 0.96906 1.02240 1.21672 0.86776 0.91702 0.94338 0.91210 1.23032 0.98302 1.00082 0.96000 1.22980 0.95858 0.97714 1.00400 1.20170 0.91419 0.84081 0.88589 1.22468 0.98484 0.99189 1.01153 1.20901 0.93954 1.23284 1.17346 0.90097 1.24993 0.94319 0.94932 0.97956 1.69963 1.16872 1.27934 1.38671 0.86178 0.77775 0.79991 0.81116 1.20288 1.24625 1.18602 1.88556 1.18160 1.49867 1.71845 1.17284 0.89041 0.80949 1.04916 1.91435 1.80201 1.46163 1.93997 0.91157 0.91413 0.91223 0.85470 0.85446 0.83519 0.90795 0.91545 0.92539 0.90493 0.92517 0.92521 0.95640 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.84 36.00 0.35 -0.76 16 2 C -0.13 -1.75 5.89 -104.56 -0.62 -2.37 16 3 C -0.10 -1.28 9.70 -39.59 -0.38 -1.66 16 4 C -0.13 -1.89 10.05 -39.57 -0.40 -2.28 16 5 C -0.07 -1.26 9.38 -39.59 -0.37 -1.63 16 6 C -0.10 -1.84 5.12 -104.55 -0.54 -2.37 16 7 C 0.11 2.19 3.28 -26.83 -0.09 2.11 16 8 H 0.07 1.32 7.81 -51.93 -0.41 0.92 16 9 C -0.14 -2.45 6.58 -24.72 -0.16 -2.61 16 10 C -0.13 -2.60 6.27 -25.20 -0.16 -2.76 16 11 C 0.20 4.55 0.70 -91.19 -0.06 4.49 16 12 C -0.16 -3.35 8.34 37.16 0.31 -3.04 16 13 C -0.52 -14.36 8.64 -34.44 -0.30 -14.66 16 14 H 0.08 2.40 7.92 -52.49 -0.42 1.98 16 15 C 0.08 2.36 5.46 -17.82 -0.10 2.26 16 16 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 17 Si 0.92 23.64 24.47 -169.99 -4.16 19.48 16 18 H -0.28 -6.93 6.09 56.52 0.34 -6.59 16 19 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 20 H -0.26 -6.58 5.31 56.52 0.30 -6.28 16 21 O -0.36 -8.44 4.79 -35.23 -0.17 -8.61 16 22 C 0.10 1.56 7.19 -39.42 -0.28 1.28 16 23 F -0.14 -2.21 15.79 2.25 0.04 -2.17 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.15 3.02 6.35 -52.49 -0.33 2.69 16 30 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 33 H 0.08 1.57 7.61 -51.93 -0.40 1.17 16 34 H 0.06 1.30 5.80 -51.93 -0.30 1.00 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -30.49 297.88 -7.14 -37.62 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.32 Total: -0.17 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.79 Total: -24.00 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.17 Total: -8.61 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.16 Total: 19.48 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.49 -7.14 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384665900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.004 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds