Wall clock time and date at job start Mon Mar 30 2020 07:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38224 * 120.01267 * 2 1 4 4 C 1.38227 * 120.02402 * 179.97438 * 3 2 1 5 5 C 1.38270 * 120.05465 * 359.76028 * 4 3 2 6 6 C 1.38182 * 120.01880 * 0.51649 * 5 4 3 7 7 C 1.50706 * 120.00801 * 179.74325 * 6 5 4 8 8 H 1.09006 * 110.27195 * 142.63154 * 7 6 5 9 9 C 1.54944 * 110.30657 * 264.72207 * 7 6 5 10 10 C 1.55309 * 100.94101 * 155.45975 * 9 7 6 11 11 C 1.54384 * 102.24949 * 325.86750 * 10 9 7 12 12 C 1.53006 * 109.82696 * 140.87090 * 11 10 9 13 13 C 1.50696 * 109.82751 * 261.74707 * 11 10 9 14 14 H 1.08000 * 120.00381 * 359.82380 * 13 11 10 15 15 C 1.37878 * 120.00126 * 179.81486 * 13 11 10 16 16 N 1.31521 * 119.99815 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00442 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47136 * 120.00185 * 17 15 13 20 20 H 1.48500 * 109.47054 * 240.00290 * 17 15 13 21 21 O 1.43231 * 107.59269 * 21.35421 * 11 10 9 22 22 C 1.38442 * 120.01787 * 179.97438 * 2 1 3 23 23 F 1.35109 * 120.01778 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47095 * 270.02275 * 1 2 3 25 25 H 1.09002 * 109.47631 * 30.02141 * 1 2 3 26 26 H 1.08999 * 109.47180 * 150.02612 * 1 2 3 27 27 H 1.07994 * 119.98511 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.97200 * 180.02562 * 4 3 2 29 29 H 1.07992 * 119.99138 * 180.27749 * 5 4 3 30 30 H 1.09001 * 111.12569 * 37.54110 * 9 7 6 31 31 H 1.08997 * 111.12563 * 273.37785 * 9 7 6 32 32 H 1.08995 * 110.84832 * 207.67453 * 10 9 7 33 33 H 1.08996 * 111.01826 * 84.13347 * 10 9 7 34 34 H 1.09001 * 109.46801 * 59.99745 * 12 11 10 35 35 H 1.09001 * 109.46998 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47050 * 299.99633 * 12 11 10 37 37 H 0.97001 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0005 0.0061 6 6 3.5842 -1.1972 0.0003 7 6 4.3395 -2.5013 0.0005 8 1 3.8229 -3.2369 0.6172 9 6 4.4996 -3.0302 -1.4471 10 6 5.7642 -3.9193 -1.2979 11 6 6.5855 -3.1464 -0.2436 12 6 7.2550 -4.1314 0.7170 13 6 7.6338 -2.3069 -0.9272 14 1 7.7170 -2.3181 -2.0040 15 6 8.4866 -1.5242 -0.1781 16 7 8.3856 -1.5107 1.1331 17 14 9.7855 -0.4830 -1.0255 18 1 9.6915 -0.6736 -2.4952 19 1 9.5641 0.9483 -0.6973 20 1 11.1332 -0.8954 -0.5576 21 8 5.6798 -2.3034 0.4779 22 6 2.1995 -1.1987 0.0005 23 9 1.5247 -2.3692 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6583 2.1321 -0.0004 28 1 4.1199 2.1328 0.0010 29 1 5.3532 0.0019 0.0110 30 1 4.6742 -2.2130 -2.1469 31 1 3.6355 -3.6234 -1.7464 32 1 6.3065 -3.9838 -2.2411 33 1 5.5029 -4.9129 -0.9339 34 1 7.9177 -4.7913 0.1571 35 1 7.8334 -3.5798 1.4582 36 1 6.4911 -4.7246 1.2197 37 1 8.9858 -0.9604 1.6602 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384665902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:39 Heat of formation + Delta-G solvation = -74.878990 kcal Electronic energy + Delta-G solvation = -20518.504498 eV Core-core repulsion = 17367.830906 eV Total energy + Delta-G solvation = -3150.673592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.56880 -39.19844 -37.91734 -33.48436 -32.35452 -31.07503 -30.86884 -28.90226 -26.68857 -25.35210 -24.70563 -21.99385 -21.39579 -20.11933 -19.24988 -17.26055 -16.79204 -16.12688 -15.38333 -15.27371 -14.79185 -14.44098 -13.95814 -13.44209 -13.30816 -13.13681 -12.94559 -12.72991 -12.52005 -12.24143 -11.80732 -11.66253 -11.32251 -11.26203 -10.92636 -10.89370 -10.68357 -10.44939 -10.38194 -10.30039 -9.91656 -9.58164 -9.13782 -8.51550 -8.36370 -8.26329 -7.84665 -5.95827 -4.12298 1.50586 1.58203 3.27295 3.36386 3.39621 3.93179 4.40779 4.54608 4.78425 4.95867 5.14791 5.27616 5.43499 5.47035 5.57185 5.59894 5.63490 5.74009 5.81008 5.90505 6.13666 6.22104 6.31680 6.36330 6.46751 6.56855 6.59754 6.77872 6.81919 6.87971 6.93592 6.99286 7.15214 7.30624 7.36696 7.77706 8.10066 8.37046 8.60672 9.03129 9.58588 11.05524 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.006803 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.887416 B = 4114.708561 C = 4871.123459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.133 4.133 5 C -0.061 4.061 6 C -0.099 4.099 7 C 0.114 3.886 8 H 0.059 0.941 9 C -0.136 4.136 10 C -0.142 4.142 11 C 0.227 3.773 12 C -0.141 4.141 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.081 3.919 16 N -0.860 5.860 17 Si 0.884 3.116 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 O -0.342 6.342 22 C 0.093 3.907 23 F -0.142 7.142 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.011 0.989 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 2.563 -2.270 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.151 4.151 5 C -0.079 4.079 6 C -0.100 4.100 7 C 0.055 3.945 8 H 0.077 0.923 9 C -0.174 4.174 10 C -0.180 4.180 11 C 0.190 3.810 12 C -0.199 4.199 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.124 4.124 16 N -0.496 5.496 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 O -0.262 6.262 22 C 0.073 3.927 23 F -0.121 7.121 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.030 0.970 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.394 2.720 -1.938 11.873 hybrid contribution 0.552 0.287 -0.559 0.836 sum -10.842 3.006 -2.498 11.525 Atomic orbital electron populations 1.20642 0.90728 1.02746 1.02301 1.19749 0.96430 0.91989 1.05220 1.20805 0.94232 0.96471 1.00806 1.21246 0.93931 0.98532 1.01375 1.21260 1.02249 0.90119 0.94266 1.20145 0.91018 0.97634 1.01174 1.21397 0.88062 0.90764 0.94280 0.92335 1.23104 0.97993 0.99635 0.96679 1.23217 0.95742 0.97655 1.01343 1.19684 0.86852 0.87453 0.86999 1.22003 0.99290 0.97520 1.01041 1.21259 1.14976 1.27570 0.92793 0.92304 1.24993 0.96610 0.96101 0.94714 1.69975 1.36909 1.38428 1.04325 0.86681 0.81742 0.80438 0.79951 1.19784 1.20926 1.20979 1.88763 1.11874 1.64995 1.60545 1.17341 0.89274 0.80781 1.05269 1.91423 1.80265 1.46319 1.94067 0.91315 0.91414 0.91568 0.85817 0.85737 0.83020 0.90858 0.92061 0.91156 0.92921 0.94480 0.89093 0.96953 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.84 36.00 0.35 -0.86 16 2 C -0.13 -1.96 5.89 -104.56 -0.62 -2.57 16 3 C -0.11 -1.45 9.70 -39.59 -0.38 -1.84 16 4 C -0.13 -2.07 10.04 -39.57 -0.40 -2.47 16 5 C -0.06 -1.17 9.38 -39.59 -0.37 -1.54 16 6 C -0.10 -1.92 5.11 -104.55 -0.53 -2.45 16 7 C 0.11 2.40 3.40 -26.85 -0.09 2.31 16 8 H 0.06 1.22 7.90 -51.93 -0.41 0.81 16 9 C -0.14 -2.66 6.56 -24.48 -0.16 -2.82 16 10 C -0.14 -2.96 6.08 -24.78 -0.15 -3.11 16 11 C 0.23 5.60 0.82 -91.05 -0.07 5.53 16 12 C -0.14 -3.42 8.52 37.16 0.32 -3.11 16 13 C -0.53 -14.09 8.23 -34.44 -0.28 -14.37 16 14 H 0.06 1.56 7.48 -52.49 -0.39 1.17 16 15 C 0.08 2.18 5.26 -17.82 -0.09 2.08 16 16 N -0.86 -24.04 10.92 55.43 0.61 -23.43 16 17 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 O -0.34 -8.59 8.66 -35.23 -0.31 -8.90 16 22 C 0.09 1.60 7.19 -39.42 -0.28 1.32 16 23 F -0.14 -2.44 15.84 2.25 0.04 -2.40 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.07 0.74 7.64 -51.93 -0.40 0.35 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.15 3.35 7.28 -52.49 -0.38 2.96 16 30 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.43 7.60 -51.93 -0.39 1.04 16 33 H 0.05 1.01 7.85 -51.93 -0.41 0.60 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 2.45 6.02 -51.93 -0.31 2.13 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -28.47 307.20 -8.03 -36.50 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.21 Total: 1.84 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -2.77 Total: -23.90 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.61 Total: -23.43 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.31 Total: -8.90 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.47 -8.03 -36.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384665902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.378 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds