Wall clock time and date at job start Mon Mar 30 2020 07:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38224 * 120.01267 * 2 1 4 4 C 1.38227 * 120.02402 * 179.97438 * 3 2 1 5 5 C 1.38270 * 120.05465 * 359.76028 * 4 3 2 6 6 C 1.38182 * 120.01880 * 0.51649 * 5 4 3 7 7 C 1.50706 * 120.00801 * 179.74325 * 6 5 4 8 8 H 1.09006 * 110.27195 * 142.63154 * 7 6 5 9 9 C 1.54944 * 110.30657 * 264.72207 * 7 6 5 10 10 C 1.55309 * 100.94101 * 155.45975 * 9 7 6 11 11 C 1.54384 * 102.24949 * 325.86750 * 10 9 7 12 12 C 1.53006 * 109.82696 * 140.87090 * 11 10 9 13 13 C 1.50696 * 109.82751 * 261.74707 * 11 10 9 14 14 H 1.08000 * 120.00381 * 359.82380 * 13 11 10 15 15 C 1.37878 * 120.00126 * 179.81486 * 13 11 10 16 16 N 1.31521 * 119.99815 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00442 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47136 * 120.00185 * 17 15 13 20 20 H 1.48500 * 109.47054 * 240.00290 * 17 15 13 21 21 O 1.43231 * 107.59269 * 21.35421 * 11 10 9 22 22 C 1.38442 * 120.01787 * 179.97438 * 2 1 3 23 23 F 1.35109 * 120.01778 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47095 * 270.02275 * 1 2 3 25 25 H 1.09002 * 109.47631 * 30.02141 * 1 2 3 26 26 H 1.08999 * 109.47180 * 150.02612 * 1 2 3 27 27 H 1.07994 * 119.98511 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.97200 * 180.02562 * 4 3 2 29 29 H 1.07992 * 119.99138 * 180.27749 * 5 4 3 30 30 H 1.09001 * 111.12569 * 37.54110 * 9 7 6 31 31 H 1.08997 * 111.12563 * 273.37785 * 9 7 6 32 32 H 1.08995 * 110.84832 * 207.67453 * 10 9 7 33 33 H 1.08996 * 111.01826 * 84.13347 * 10 9 7 34 34 H 1.09001 * 109.46801 * 59.99745 * 12 11 10 35 35 H 1.09001 * 109.46998 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47050 * 299.99633 * 12 11 10 37 37 H 0.97001 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0005 0.0061 6 6 3.5842 -1.1972 0.0003 7 6 4.3395 -2.5013 0.0005 8 1 3.8229 -3.2369 0.6172 9 6 4.4996 -3.0302 -1.4471 10 6 5.7642 -3.9193 -1.2979 11 6 6.5855 -3.1464 -0.2436 12 6 7.2550 -4.1314 0.7170 13 6 7.6338 -2.3069 -0.9272 14 1 7.7170 -2.3181 -2.0040 15 6 8.4866 -1.5242 -0.1781 16 7 8.3856 -1.5107 1.1331 17 14 9.7855 -0.4830 -1.0255 18 1 9.6915 -0.6736 -2.4952 19 1 9.5641 0.9483 -0.6973 20 1 11.1332 -0.8954 -0.5576 21 8 5.6798 -2.3034 0.4779 22 6 2.1995 -1.1987 0.0005 23 9 1.5247 -2.3692 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6583 2.1321 -0.0004 28 1 4.1199 2.1328 0.0010 29 1 5.3532 0.0019 0.0110 30 1 4.6742 -2.2130 -2.1469 31 1 3.6355 -3.6234 -1.7464 32 1 6.3065 -3.9838 -2.2411 33 1 5.5029 -4.9129 -0.9339 34 1 7.9177 -4.7913 0.1571 35 1 7.8334 -3.5798 1.4582 36 1 6.4911 -4.7246 1.2197 37 1 8.9858 -0.9604 1.6602 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384665902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:39 Heat of formation + Delta-G solvation = -89.069657 kcal Electronic energy + Delta-G solvation = -20519.119851 eV Core-core repulsion = 17367.830906 eV Total energy + Delta-G solvation = -3151.288945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.88096 -40.70925 -39.43115 -35.22929 -33.83528 -32.78875 -32.39747 -30.54245 -27.77901 -27.33430 -26.39893 -23.46684 -22.71756 -21.71810 -20.99685 -18.90108 -18.32680 -17.59194 -16.85304 -16.68595 -16.42320 -16.19584 -15.51113 -15.03810 -14.71155 -14.35223 -14.29836 -14.22407 -14.07577 -13.56938 -13.28225 -13.20950 -13.04203 -12.80406 -12.57983 -12.51351 -12.30520 -12.20860 -12.09697 -11.95035 -11.65648 -11.32088 -10.99027 -10.56643 -9.91857 -9.53941 -9.49476 -8.00241 -6.23173 0.21990 0.30922 1.39718 1.42762 1.52729 2.44026 2.63939 3.06496 3.31067 3.48843 3.73747 3.84375 3.96095 4.07098 4.15560 4.29896 4.39835 4.45674 4.62312 4.73423 4.78821 4.80811 4.87267 4.93158 5.00971 5.06785 5.10083 5.18518 5.22806 5.33428 5.35950 5.40700 5.53451 5.64689 5.70734 6.02800 6.09825 6.36288 6.66242 7.10319 7.51730 9.00329 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.006803 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.887416 B = 4114.708561 C = 4871.123459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.124 4.124 3 C -0.091 4.091 4 C -0.128 4.128 5 C -0.089 4.089 6 C -0.121 4.121 7 C 0.108 3.892 8 H 0.056 0.944 9 C -0.125 4.125 10 C -0.137 4.137 11 C 0.212 3.788 12 C -0.135 4.135 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.036 3.964 16 N -0.889 5.889 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.280 1.280 21 O -0.370 6.370 22 C 0.078 3.922 23 F -0.144 7.144 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.169 0.831 28 H 0.146 0.854 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 3.813 -3.172 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.123 4.123 7 C 0.049 3.951 8 H 0.073 0.927 9 C -0.162 4.162 10 C -0.175 4.175 11 C 0.175 3.825 12 C -0.193 4.193 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.166 4.166 16 N -0.526 5.526 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.206 1.206 21 O -0.290 6.290 22 C 0.059 3.941 23 F -0.123 7.123 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.187 0.813 28 H 0.164 0.836 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.559 3.960 -2.851 14.411 hybrid contribution 1.141 -0.083 -0.250 1.171 sum -12.418 3.877 -3.101 13.374 Atomic orbital electron populations 1.20758 0.87791 1.04192 1.03579 1.20246 0.98511 0.91045 1.02722 1.21269 0.93327 0.97985 0.98315 1.21488 0.95143 0.97859 1.00106 1.20992 1.00438 0.91931 0.97416 1.20050 0.92129 0.96733 1.03338 1.21525 0.86506 0.92169 0.94896 0.92655 1.23026 0.98325 0.99273 0.95610 1.23141 0.95785 0.98240 1.00286 1.19788 0.87265 0.87591 0.87874 1.21906 0.99381 0.97459 1.00536 1.21549 1.15830 1.27958 0.92654 0.92843 1.25667 0.98502 0.97205 0.95219 1.70117 1.37766 1.39209 1.05528 0.85742 0.79364 0.78780 0.79106 1.19257 1.20811 1.20560 1.88703 1.13773 1.65382 1.61189 1.17469 0.88546 0.81823 1.06261 1.91411 1.80034 1.46632 1.94192 0.89957 0.88510 0.91674 0.81335 0.83600 0.87210 0.91796 0.89344 0.90923 0.91174 0.93735 0.92073 0.95656 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.84 71.23 0.70 -1.25 16 2 C -0.12 -3.27 5.89 -19.82 -0.12 -3.39 16 3 C -0.09 -2.19 9.70 22.26 0.22 -1.97 16 4 C -0.13 -3.80 10.04 22.27 0.22 -3.57 16 5 C -0.09 -3.52 9.38 22.26 0.21 -3.31 16 6 C -0.12 -4.78 5.11 -19.82 -0.10 -4.88 16 7 C 0.11 4.64 3.40 30.51 0.10 4.74 16 8 H 0.06 2.36 7.90 -2.38 -0.02 2.34 16 9 C -0.12 -4.85 6.56 32.05 0.21 -4.64 16 10 C -0.14 -5.70 6.08 31.86 0.19 -5.50 16 11 C 0.21 10.72 0.82 -11.07 -0.01 10.71 16 12 C -0.13 -6.73 8.52 71.98 0.61 -6.11 16 13 C -0.54 -29.70 8.23 25.60 0.21 -29.49 16 14 H 0.05 2.90 7.48 -2.91 -0.02 2.87 16 15 C 0.04 2.00 5.26 84.65 0.45 2.45 16 16 N -0.89 -51.55 10.92 21.45 0.23 -51.31 16 17 Si 0.94 43.40 29.54 68.60 2.03 45.42 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 O -0.37 -19.36 8.66 -148.98 -1.29 -20.65 16 22 C 0.08 2.62 7.19 22.37 0.16 2.78 16 23 F -0.14 -4.76 15.84 44.97 0.71 -4.05 16 24 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.10 1.24 8.09 -2.39 -0.02 1.22 16 26 H 0.06 1.23 7.64 -2.39 -0.02 1.21 16 27 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.11 5.21 7.28 -2.91 -0.02 5.19 16 30 H 0.06 2.57 8.05 -2.39 -0.02 2.55 16 31 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 2.94 7.60 -2.39 -0.02 2.93 16 33 H 0.07 2.63 7.85 -2.39 -0.02 2.61 16 34 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 3.41 6.02 -2.39 -0.01 3.40 16 36 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -63.81 307.20 5.80 -58.01 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.06 Total: 16.03 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 3.06 Total: -43.45 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.23 Total: -51.31 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.29 Total: -20.65 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.71 Total: -4.05 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.81 5.80 -58.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384665902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.059 kcal (2) G-P(sol) polarization free energy of solvation -63.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds