Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 120.01193 * 2 1 4 4 C 1.38217 * 120.02444 * 180.02562 * 3 2 1 5 5 C 1.38267 * 120.05311 * 359.97204 * 4 3 2 6 6 C 1.38175 * 120.02390 * 0.04875 * 5 4 3 7 7 C 1.50705 * 120.01110 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47905 * 215.02039 * 7 6 5 9 9 C 1.53091 * 109.48067 * 95.00174 * 7 6 5 10 10 C 1.53176 * 109.16523 * 182.40745 * 9 7 6 11 11 C 1.53177 * 109.03453 * 56.98189 * 10 9 7 12 12 C 1.53099 * 109.16263 * 303.01548 * 11 10 9 13 13 H 1.08993 * 109.48124 * 177.60233 * 12 11 10 14 14 C 1.50697 * 109.48010 * 297.63134 * 12 11 10 15 15 H 1.07991 * 120.00449 * 359.69795 * 14 12 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 O 1.42904 * 109.41862 * 57.61802 * 12 11 10 23 23 C 1.38444 * 120.01148 * 180.31454 * 2 1 3 24 24 F 1.35095 * 120.02592 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46803 * 90.00482 * 1 2 3 26 26 H 1.09008 * 109.47197 * 209.99869 * 1 2 3 27 27 H 1.09000 * 109.47447 * 330.00220 * 1 2 3 28 28 H 1.07999 * 119.98702 * 0.03772 * 3 2 1 29 29 H 1.07997 * 119.97633 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.98926 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.52080 * 62.49884 * 9 7 6 32 32 H 1.09000 * 109.52269 * 302.31414 * 9 7 6 33 33 H 1.08998 * 109.54151 * 297.11319 * 10 9 7 34 34 H 1.09003 * 109.54179 * 176.84475 * 10 9 7 35 35 H 1.09007 * 109.52086 * 183.11568 * 11 10 9 36 36 H 1.08998 * 109.57660 * 62.95689 * 11 10 9 37 37 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2732 0.0005 -0.0005 6 6 3.5842 -1.1972 -0.0009 7 6 4.3395 -2.5013 -0.0015 8 1 3.7935 -3.2373 -0.5914 9 6 4.4866 -3.0067 1.4361 10 6 5.3067 -4.3004 1.4329 11 6 6.6611 -4.0317 0.7698 12 6 6.4300 -3.4868 -0.6421 13 1 7.3897 -3.2537 -1.1033 14 6 5.7131 -4.5224 -1.4694 15 1 5.4529 -5.4758 -1.0341 16 6 5.3945 -4.2549 -2.7840 17 7 5.7114 -3.0938 -3.3142 18 14 4.5127 -5.5415 -3.8118 19 1 3.0449 -5.3604 -3.6788 20 1 4.9032 -5.3895 -5.2365 21 1 4.8893 -6.8973 -3.3373 22 8 5.6356 -2.3012 -0.5697 23 6 2.1995 -1.1988 -0.0066 24 9 1.5248 -2.3692 -0.0135 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6584 2.1322 0.0006 29 1 4.1199 2.1328 -0.0001 30 1 5.3532 0.0020 -0.0005 31 1 3.4999 -3.2018 1.8563 32 1 4.9967 -2.2535 2.0366 33 1 4.7730 -5.0690 0.8739 34 1 5.4628 -4.6357 2.4583 35 1 7.2296 -4.9601 0.7134 36 1 7.2161 -3.2998 1.3565 37 1 5.4869 -2.9054 -4.2389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384679074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -84.595919 kcal Electronic energy + Delta-G solvation = -20713.999747 eV Core-core repulsion = 17562.904797 eV Total energy + Delta-G solvation = -3151.094950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.43975 -39.10215 -37.77774 -33.26604 -32.51868 -32.07171 -31.08807 -28.76351 -26.66666 -25.64560 -23.73552 -22.30501 -21.42528 -20.49026 -18.91983 -17.08491 -16.48719 -15.92998 -15.46425 -15.27131 -14.68024 -14.35262 -13.97502 -13.65677 -13.49514 -13.22704 -13.12854 -12.86470 -12.67605 -12.22903 -12.01529 -11.78915 -11.48909 -11.29514 -11.13060 -10.91446 -10.63816 -10.60379 -10.33405 -10.17879 -9.73680 -9.63900 -8.77162 -8.46751 -8.35112 -8.22274 -7.73248 -5.98977 -4.13969 1.55693 1.61257 3.29705 3.36991 3.39055 3.96431 4.41287 4.62096 4.86098 5.00674 5.22376 5.31205 5.43907 5.50612 5.65112 5.67016 5.76299 5.79183 5.85829 5.92538 6.11460 6.22274 6.32002 6.36473 6.45085 6.50535 6.55828 6.70338 6.79498 6.80999 6.93462 6.98944 7.03806 7.16950 7.33229 7.68127 7.87509 8.20953 8.80252 9.05174 9.58405 11.05215 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.007783 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.300444 B = 3596.894936 C = 4080.958981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.133 4.133 5 C -0.069 4.069 6 C -0.086 4.086 7 C 0.143 3.857 8 H 0.077 0.923 9 C -0.135 4.135 10 C -0.108 4.108 11 C -0.142 4.142 12 C 0.213 3.787 13 H 0.063 0.937 14 C -0.559 4.559 15 H 0.057 0.943 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.880 3.120 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.365 6.365 23 C 0.097 3.903 24 F -0.138 7.138 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 6.667 7.763 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.131 4.131 3 C -0.126 4.126 4 C -0.152 4.152 5 C -0.087 4.087 6 C -0.087 4.087 7 C 0.085 3.915 8 H 0.094 0.906 9 C -0.173 4.173 10 C -0.145 4.145 11 C -0.180 4.180 12 C 0.157 3.843 13 H 0.080 0.920 14 C -0.597 4.597 15 H 0.075 0.925 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.708 3.292 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.284 6.284 23 C 0.078 3.922 24 F -0.117 7.117 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.157 0.843 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.207 6.910 7.535 11.961 hybrid contribution -0.694 -1.174 -0.667 1.518 sum -6.901 5.737 6.867 11.300 Atomic orbital electron populations 1.20655 0.90718 1.02704 1.02429 1.19779 0.96499 0.92004 1.04841 1.20756 0.94203 0.96427 1.01169 1.21167 0.94037 0.98237 1.01718 1.20982 1.01129 0.90428 0.96153 1.20089 0.91272 0.97479 0.99823 1.20225 0.87883 0.91020 0.92409 0.90577 1.22077 0.99492 0.98019 0.97678 1.21438 0.97117 0.97287 0.98693 1.22187 0.96000 1.00089 0.99714 1.19733 0.91845 0.83653 0.89067 0.91955 1.21529 1.40338 1.01454 0.96377 0.92451 1.25021 0.95036 0.94893 0.97663 1.70048 1.44534 1.21158 1.13579 0.86788 0.80322 0.82349 0.79765 1.20499 1.21097 1.19766 1.87881 1.23656 1.35235 1.81670 1.17352 0.89361 0.80886 1.04629 1.91445 1.80148 1.46195 1.93894 0.91221 0.91508 0.91428 0.85841 0.85865 0.84328 0.92759 0.92543 0.91216 0.93899 0.92479 0.94002 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.83 36.01 0.35 -0.98 16 2 C -0.13 -2.03 5.89 -104.55 -0.62 -2.65 16 3 C -0.11 -1.50 9.70 -39.60 -0.38 -1.89 16 4 C -0.13 -1.98 10.04 -39.58 -0.40 -2.38 16 5 C -0.07 -1.25 9.35 -39.59 -0.37 -1.62 16 6 C -0.09 -1.73 5.07 -104.55 -0.53 -2.26 16 7 C 0.14 3.22 2.37 -27.83 -0.07 3.15 16 8 H 0.08 1.96 6.73 -51.93 -0.35 1.61 16 9 C -0.13 -2.62 5.40 -26.59 -0.14 -2.76 16 10 C -0.11 -2.09 5.78 -26.55 -0.15 -2.25 16 11 C -0.14 -2.96 5.59 -26.59 -0.15 -3.11 16 12 C 0.21 5.33 3.16 -27.83 -0.09 5.24 16 13 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 14 C -0.56 -15.09 6.59 -34.44 -0.23 -15.32 16 15 H 0.06 1.53 6.88 -52.49 -0.36 1.17 16 16 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 17 N -0.86 -24.95 12.83 55.43 0.71 -24.24 16 18 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 O -0.37 -9.13 8.47 -35.23 -0.30 -9.43 16 23 C 0.10 1.82 7.18 -39.42 -0.28 1.54 16 24 F -0.14 -2.70 15.78 2.25 0.04 -2.67 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.82 7.65 -51.92 -0.40 0.42 16 27 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.14 2.57 7.35 -52.49 -0.39 2.18 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.45 6.85 -51.93 -0.36 1.09 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -29.37 304.26 -8.35 -37.71 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.21 Total: 0.79 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -3.15 Total: -23.14 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.71 Total: -24.24 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.30 Total: -9.43 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.37 -8.35 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.884 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds