Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 120.01193 * 2 1 4 4 C 1.38217 * 120.02444 * 180.02562 * 3 2 1 5 5 C 1.38267 * 120.05311 * 359.97204 * 4 3 2 6 6 C 1.38175 * 120.02390 * 0.04875 * 5 4 3 7 7 C 1.50705 * 120.01110 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47905 * 215.02039 * 7 6 5 9 9 C 1.53091 * 109.48067 * 95.00174 * 7 6 5 10 10 C 1.53176 * 109.16523 * 182.40745 * 9 7 6 11 11 C 1.53177 * 109.03453 * 56.98189 * 10 9 7 12 12 C 1.53099 * 109.16263 * 303.01548 * 11 10 9 13 13 H 1.08993 * 109.48124 * 177.60233 * 12 11 10 14 14 C 1.50697 * 109.48010 * 297.63134 * 12 11 10 15 15 H 1.07991 * 120.00449 * 359.69795 * 14 12 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 O 1.42904 * 109.41862 * 57.61802 * 12 11 10 23 23 C 1.38444 * 120.01148 * 180.31454 * 2 1 3 24 24 F 1.35095 * 120.02592 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46803 * 90.00482 * 1 2 3 26 26 H 1.09008 * 109.47197 * 209.99869 * 1 2 3 27 27 H 1.09000 * 109.47447 * 330.00220 * 1 2 3 28 28 H 1.07999 * 119.98702 * 0.03772 * 3 2 1 29 29 H 1.07997 * 119.97633 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.98926 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.52080 * 62.49884 * 9 7 6 32 32 H 1.09000 * 109.52269 * 302.31414 * 9 7 6 33 33 H 1.08998 * 109.54151 * 297.11319 * 10 9 7 34 34 H 1.09003 * 109.54179 * 176.84475 * 10 9 7 35 35 H 1.09007 * 109.52086 * 183.11568 * 11 10 9 36 36 H 1.08998 * 109.57660 * 62.95689 * 11 10 9 37 37 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2732 0.0005 -0.0005 6 6 3.5842 -1.1972 -0.0009 7 6 4.3395 -2.5013 -0.0015 8 1 3.7935 -3.2373 -0.5914 9 6 4.4866 -3.0067 1.4361 10 6 5.3067 -4.3004 1.4329 11 6 6.6611 -4.0317 0.7698 12 6 6.4300 -3.4868 -0.6421 13 1 7.3897 -3.2537 -1.1033 14 6 5.7131 -4.5224 -1.4694 15 1 5.4529 -5.4758 -1.0341 16 6 5.3945 -4.2549 -2.7840 17 7 5.7114 -3.0938 -3.3142 18 14 4.5127 -5.5415 -3.8118 19 1 3.0449 -5.3604 -3.6788 20 1 4.9032 -5.3895 -5.2365 21 1 4.8893 -6.8973 -3.3373 22 8 5.6356 -2.3012 -0.5697 23 6 2.1995 -1.1988 -0.0066 24 9 1.5248 -2.3692 -0.0135 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6584 2.1322 0.0006 29 1 4.1199 2.1328 -0.0001 30 1 5.3532 0.0020 -0.0005 31 1 3.4999 -3.2018 1.8563 32 1 4.9967 -2.2535 2.0366 33 1 4.7730 -5.0690 0.8739 34 1 5.4628 -4.6357 2.4583 35 1 7.2296 -4.9601 0.7134 36 1 7.2161 -3.2998 1.3565 37 1 5.4869 -2.9054 -4.2389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384679074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -99.992119 kcal Electronic energy + Delta-G solvation = -20714.667376 eV Core-core repulsion = 17562.904797 eV Total energy + Delta-G solvation = -3151.762579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.88129 -40.60310 -39.34759 -34.95209 -34.23037 -33.81956 -32.51905 -30.36115 -27.79768 -27.61307 -25.36010 -24.05424 -22.74524 -21.94872 -20.72937 -18.48795 -18.33830 -17.47749 -17.01114 -16.72720 -16.59697 -15.81174 -15.78343 -15.27934 -15.13577 -14.64767 -14.40693 -14.24500 -14.14491 -13.68528 -13.51575 -13.27041 -13.04928 -12.87389 -12.69257 -12.59747 -12.44082 -12.18976 -11.98227 -11.84156 -11.56234 -11.30682 -10.75823 -10.51449 -9.90598 -9.52698 -9.41268 -8.12667 -6.32516 0.25068 0.32968 1.33228 1.35162 1.43911 2.36415 2.67599 3.04709 3.31272 3.45533 3.81485 3.93449 4.08434 4.15396 4.20318 4.30710 4.42414 4.44730 4.51824 4.70332 4.75597 4.77135 4.89753 4.90189 5.01114 5.12677 5.14974 5.22148 5.27809 5.33378 5.37201 5.44001 5.48817 5.58710 5.67592 5.78554 6.05026 6.13969 6.73102 7.08498 7.43713 8.91416 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.007783 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.300444 B = 3596.894936 C = 4080.958981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.117 4.117 7 C 0.146 3.854 8 H 0.030 0.970 9 C -0.127 4.127 10 C -0.105 4.105 11 C -0.134 4.134 12 C 0.205 3.795 13 H 0.032 0.968 14 C -0.562 4.562 15 H 0.055 0.945 16 C 0.030 3.970 17 N -0.892 5.892 18 Si 0.939 3.061 19 H -0.282 1.282 20 H -0.280 1.280 21 H -0.262 1.262 22 O -0.382 6.382 23 C 0.066 3.934 24 F -0.152 7.152 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 8.127 8.956 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.139 4.139 5 C -0.108 4.108 6 C -0.118 4.118 7 C 0.088 3.912 8 H 0.048 0.952 9 C -0.165 4.165 10 C -0.142 4.142 11 C -0.172 4.172 12 C 0.149 3.851 13 H 0.050 0.950 14 C -0.600 4.600 15 H 0.074 0.926 16 C -0.172 4.172 17 N -0.530 5.530 18 Si 0.764 3.236 19 H -0.209 1.209 20 H -0.205 1.205 21 H -0.186 1.186 22 O -0.301 6.301 23 C 0.047 3.953 24 F -0.131 7.131 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.188 0.812 29 H 0.177 0.823 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.666 8.353 8.738 14.315 hybrid contribution -0.260 -1.536 -1.015 1.860 sum -7.926 6.817 7.723 12.998 Atomic orbital electron populations 1.20758 0.88204 1.04176 1.03287 1.20258 0.98402 0.91188 1.02921 1.21295 0.93907 0.97536 0.98512 1.21554 0.94817 0.98137 0.99425 1.20995 1.00677 0.91299 0.97807 1.20055 0.92082 0.97026 1.02662 1.20160 0.86129 0.91804 0.93157 0.95177 1.22010 1.00329 0.98242 0.95932 1.21429 0.95803 0.96736 1.00251 1.22062 0.97294 1.00570 0.97274 1.19674 0.90509 0.83540 0.91414 0.95005 1.21810 1.39738 1.01703 0.96772 0.92635 1.25742 0.95900 0.96640 0.98963 1.70173 1.46158 1.22928 1.13718 0.85867 0.78792 0.80497 0.78445 1.20864 1.20503 1.18625 1.87813 1.24896 1.34939 1.82488 1.17692 0.89159 0.81751 1.06678 1.91398 1.80235 1.47217 1.94242 0.90523 0.92060 0.88000 0.81208 0.82336 0.85774 0.91632 0.91231 0.93141 0.90259 0.91760 0.92332 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 9.83 71.24 0.70 -1.61 16 2 C -0.13 -3.66 5.89 -19.82 -0.12 -3.78 16 3 C -0.09 -2.27 9.70 22.26 0.22 -2.06 16 4 C -0.12 -3.27 10.04 22.27 0.22 -3.05 16 5 C -0.09 -3.25 9.35 22.26 0.21 -3.04 16 6 C -0.12 -4.85 5.07 -19.82 -0.10 -4.95 16 7 C 0.15 6.81 2.37 29.88 0.07 6.89 16 8 H 0.03 1.66 6.73 -2.39 -0.02 1.64 16 9 C -0.13 -4.95 5.40 30.68 0.17 -4.79 16 10 C -0.10 -4.00 5.78 30.71 0.18 -3.82 16 11 C -0.13 -5.59 5.59 30.69 0.17 -5.42 16 12 C 0.20 10.66 3.16 29.88 0.09 10.75 16 13 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.56 -31.42 6.59 25.60 0.17 -31.25 16 15 H 0.06 3.05 6.88 -2.92 -0.02 3.03 16 16 C 0.03 1.72 5.40 84.66 0.46 2.18 16 17 N -0.89 -54.00 12.83 21.45 0.28 -53.73 16 18 Si 0.94 45.12 29.54 68.60 2.03 47.15 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 22 O -0.38 -19.95 8.47 -148.98 -1.26 -21.21 16 23 C 0.07 2.50 7.18 22.38 0.16 2.66 16 24 F -0.15 -6.13 15.78 44.97 0.71 -5.42 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.39 7.65 -2.38 -0.02 1.37 16 27 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.12 4.75 7.35 -2.91 -0.02 4.72 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.05 2.11 6.85 -2.39 -0.02 2.09 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.07 304.26 5.40 -61.66 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.06 Total: 12.82 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 2.60 Total: -41.28 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.73 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.26 Total: -21.21 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.71 Total: -5.42 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.07 5.40 -61.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.327 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds