Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38222 * 120.01387 * 2 1 4 4 C 1.38224 * 120.02719 * 180.02562 * 3 2 1 5 5 C 1.38268 * 120.04742 * 359.67591 * 4 3 2 6 6 C 1.38168 * 120.02991 * 0.60316 * 5 4 3 7 7 C 1.50703 * 120.01984 * 179.69785 * 6 5 4 8 8 H 1.08998 * 109.48124 * 144.69821 * 7 6 5 9 9 C 1.53088 * 109.47760 * 264.72532 * 7 6 5 10 10 C 1.53181 * 109.16014 * 177.59851 * 9 7 6 11 11 C 1.53172 * 109.03818 * 303.01876 * 10 9 7 12 12 C 1.53100 * 109.16514 * 56.98099 * 11 10 9 13 13 H 1.08997 * 109.48221 * 182.40018 * 12 11 10 14 14 C 1.50696 * 109.47731 * 62.37047 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.42907 * 109.48267 * 24.67185 * 7 6 5 23 23 C 1.38439 * 120.01282 * 180.02562 * 2 1 3 24 24 F 1.35096 * 120.02688 * 0.02562 * 23 2 1 25 25 H 1.08995 * 109.47265 * 269.98026 * 1 2 3 26 26 H 1.09004 * 109.46748 * 29.97755 * 1 2 3 27 27 H 1.08996 * 109.46993 * 149.97493 * 1 2 3 28 28 H 1.08001 * 119.98912 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.97842 * 179.97438 * 4 3 2 30 30 H 1.08006 * 119.98795 * 180.31760 * 5 4 3 31 31 H 1.08997 * 109.52700 * 57.69585 * 9 7 6 32 32 H 1.09000 * 109.57419 * 297.53298 * 9 7 6 33 33 H 1.08999 * 109.54658 * 183.14986 * 10 9 7 34 34 H 1.09002 * 109.61423 * 62.93141 * 10 9 7 35 35 H 1.09002 * 109.52363 * 297.07767 * 11 10 9 36 36 H 1.09003 * 109.52850 * 176.88246 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2732 0.0005 0.0057 6 6 3.5843 -1.1972 -0.0001 7 6 4.3395 -2.5013 -0.0002 8 1 3.7934 -3.2376 0.5895 9 6 4.4864 -3.0060 -1.4380 10 6 5.3063 -4.3000 -1.4354 11 6 6.6607 -4.0319 -0.7721 12 6 6.4298 -3.4875 0.6401 13 1 7.3895 -3.2548 1.1014 14 6 5.7126 -4.5234 1.4669 15 1 5.4481 -5.4749 1.0298 16 6 5.3940 -4.2563 2.7816 17 7 4.7686 -5.1605 3.5034 18 14 5.8508 -2.6103 3.5374 19 1 7.2034 -2.7022 4.1435 20 1 5.8508 -1.5644 2.4832 21 1 4.8614 -2.2558 4.5865 22 8 5.6354 -2.3017 0.5680 23 6 2.1994 -1.1988 -0.0005 24 9 1.5247 -2.3692 -0.0016 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6584 2.1322 0.0004 29 1 4.1200 2.1328 -0.0010 30 1 5.3532 0.0019 0.0105 31 1 4.9968 -2.2527 -2.0382 32 1 3.5001 -3.2006 -1.8593 33 1 5.4624 -4.6349 -2.4608 34 1 4.7731 -5.0698 -0.8776 35 1 7.2149 -3.2993 -1.3587 36 1 7.2290 -4.9604 -0.7160 37 1 4.5448 -4.9727 4.4283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384679075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -78.753107 kcal Electronic energy + Delta-G solvation = -20816.516828 eV Core-core repulsion = 17665.675242 eV Total energy + Delta-G solvation = -3150.841586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.52974 -39.31174 -38.03173 -33.36797 -32.69374 -32.24895 -31.29248 -29.03480 -26.78240 -25.90349 -23.88859 -22.25894 -21.54612 -20.66733 -18.83614 -17.20554 -16.80616 -16.19793 -15.66951 -15.37443 -14.81213 -14.39977 -14.11093 -13.88453 -13.53990 -13.30877 -13.22994 -12.95022 -12.57947 -12.39072 -12.31697 -12.02393 -11.83257 -11.56686 -11.32161 -10.84863 -10.71810 -10.41916 -10.31791 -10.00125 -9.83497 -9.72047 -8.81726 -8.61646 -8.52065 -8.35084 -7.86796 -6.10392 -4.18884 1.41843 1.46087 3.38416 3.48126 3.71339 3.81525 4.46539 4.54030 4.70174 4.88259 5.10262 5.18927 5.33194 5.37502 5.52427 5.60085 5.65864 5.67482 5.73553 5.83481 5.99475 6.06880 6.18286 6.23717 6.31886 6.40479 6.42852 6.55563 6.63472 6.64398 6.78823 6.83876 6.89206 7.05790 7.18422 7.30941 7.64511 8.20968 8.64342 8.92579 9.54142 11.00063 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.008294 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.237591 B = 3375.169391 C = 3708.596361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C -0.105 4.105 4 C -0.134 4.134 5 C -0.075 4.075 6 C -0.094 4.094 7 C 0.136 3.864 8 H 0.087 0.913 9 C -0.131 4.131 10 C -0.110 4.110 11 C -0.131 4.131 12 C 0.175 3.825 13 H 0.062 0.938 14 C -0.551 4.551 15 H 0.075 0.925 16 C 0.084 3.916 17 N -0.891 5.891 18 Si 0.859 3.141 19 H -0.286 1.286 20 H -0.216 1.216 21 H -0.295 1.295 22 O -0.387 6.387 23 C 0.101 3.899 24 F -0.134 7.134 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 11.459 -8.814 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.129 4.129 3 C -0.123 4.123 4 C -0.152 4.152 5 C -0.093 4.093 6 C -0.095 4.095 7 C 0.078 3.922 8 H 0.105 0.895 9 C -0.169 4.169 10 C -0.147 4.147 11 C -0.169 4.169 12 C 0.119 3.881 13 H 0.080 0.920 14 C -0.588 4.588 15 H 0.094 0.906 16 C -0.120 4.120 17 N -0.528 5.528 18 Si 0.685 3.315 19 H -0.212 1.212 20 H -0.138 1.138 21 H -0.222 1.222 22 O -0.307 6.307 23 C 0.081 3.919 24 F -0.113 7.113 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.462 11.545 -8.600 15.071 hybrid contribution 0.011 0.184 0.602 0.629 sum -4.450 11.729 -7.998 14.878 Atomic orbital electron populations 1.20671 0.90504 1.02876 1.02584 1.19823 0.96684 0.91944 1.04452 1.20795 0.94175 0.96551 1.00798 1.21173 0.94098 0.98197 1.01734 1.20989 1.01055 0.90523 0.96705 1.20093 0.91453 0.97283 1.00667 1.20362 0.86978 0.91439 0.93405 0.89540 1.22011 0.99845 0.98031 0.96970 1.21457 0.96866 0.97410 0.98995 1.21970 0.96420 1.00256 0.98205 1.20163 0.91698 0.84096 0.92103 0.92037 1.21414 1.39272 1.02046 0.96057 0.90650 1.24995 0.93317 0.96769 0.96919 1.69950 1.39422 1.34628 1.08763 0.87189 0.77663 0.87051 0.79612 1.21226 1.13837 1.22150 1.87997 1.25173 1.36222 1.81320 1.17350 0.89260 0.81062 1.04179 1.91475 1.80066 1.45970 1.93762 0.91073 0.91335 0.91331 0.85668 0.85773 0.84401 0.92463 0.92412 0.93582 0.90690 0.93788 0.91981 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.84 36.00 0.35 -0.92 16 2 C -0.13 -1.89 5.89 -104.56 -0.62 -2.51 16 3 C -0.11 -1.37 9.70 -39.59 -0.38 -1.75 16 4 C -0.13 -1.84 10.04 -39.58 -0.40 -2.23 16 5 C -0.07 -1.25 9.35 -39.60 -0.37 -1.62 16 6 C -0.09 -1.78 5.08 -104.55 -0.53 -2.31 16 7 C 0.14 2.89 2.36 -27.84 -0.07 2.82 16 8 H 0.09 2.15 6.74 -51.93 -0.35 1.80 16 9 C -0.13 -2.42 5.40 -26.59 -0.14 -2.57 16 10 C -0.11 -2.07 5.78 -26.55 -0.15 -2.23 16 11 C -0.13 -2.58 5.59 -26.59 -0.15 -2.73 16 12 C 0.17 4.07 2.65 -27.83 -0.07 4.00 16 13 H 0.06 1.43 7.57 -51.93 -0.39 1.04 16 14 C -0.55 -15.05 7.17 -34.44 -0.25 -15.30 16 15 H 0.08 2.23 7.11 -52.49 -0.37 1.85 16 16 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 17 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 18 Si 0.86 21.78 26.99 -169.99 -4.59 17.20 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.22 -5.26 5.31 56.52 0.30 -4.96 16 21 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 22 O -0.39 -8.77 5.88 -35.23 -0.21 -8.98 16 23 C 0.10 1.81 7.18 -39.41 -0.28 1.52 16 24 F -0.13 -2.55 15.78 2.25 0.04 -2.52 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 0.81 7.64 -51.93 -0.40 0.41 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.14 2.31 7.34 -52.48 -0.39 1.92 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.58 6.85 -51.93 -0.36 1.22 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -30.32 298.25 -7.94 -38.26 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.29 Total: 1.50 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -3.16 Total: -23.51 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.21 Total: -8.98 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.32 -7.94 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.495 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds