Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38222 * 120.01387 * 2 1 4 4 C 1.38224 * 120.02719 * 180.02562 * 3 2 1 5 5 C 1.38268 * 120.04742 * 359.67591 * 4 3 2 6 6 C 1.38168 * 120.02991 * 0.60316 * 5 4 3 7 7 C 1.50703 * 120.01984 * 179.69785 * 6 5 4 8 8 H 1.08998 * 109.48124 * 144.69821 * 7 6 5 9 9 C 1.53088 * 109.47760 * 264.72532 * 7 6 5 10 10 C 1.53181 * 109.16014 * 177.59851 * 9 7 6 11 11 C 1.53172 * 109.03818 * 303.01876 * 10 9 7 12 12 C 1.53100 * 109.16514 * 56.98099 * 11 10 9 13 13 H 1.08997 * 109.48221 * 182.40018 * 12 11 10 14 14 C 1.50696 * 109.47731 * 62.37047 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.42907 * 109.48267 * 24.67185 * 7 6 5 23 23 C 1.38439 * 120.01282 * 180.02562 * 2 1 3 24 24 F 1.35096 * 120.02688 * 0.02562 * 23 2 1 25 25 H 1.08995 * 109.47265 * 269.98026 * 1 2 3 26 26 H 1.09004 * 109.46748 * 29.97755 * 1 2 3 27 27 H 1.08996 * 109.46993 * 149.97493 * 1 2 3 28 28 H 1.08001 * 119.98912 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.97842 * 179.97438 * 4 3 2 30 30 H 1.08006 * 119.98795 * 180.31760 * 5 4 3 31 31 H 1.08997 * 109.52700 * 57.69585 * 9 7 6 32 32 H 1.09000 * 109.57419 * 297.53298 * 9 7 6 33 33 H 1.08999 * 109.54658 * 183.14986 * 10 9 7 34 34 H 1.09002 * 109.61423 * 62.93141 * 10 9 7 35 35 H 1.09002 * 109.52363 * 297.07767 * 11 10 9 36 36 H 1.09003 * 109.52850 * 176.88246 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2732 0.0005 0.0057 6 6 3.5843 -1.1972 -0.0001 7 6 4.3395 -2.5013 -0.0002 8 1 3.7934 -3.2376 0.5895 9 6 4.4864 -3.0060 -1.4380 10 6 5.3063 -4.3000 -1.4354 11 6 6.6607 -4.0319 -0.7721 12 6 6.4298 -3.4875 0.6401 13 1 7.3895 -3.2548 1.1014 14 6 5.7126 -4.5234 1.4669 15 1 5.4481 -5.4749 1.0298 16 6 5.3940 -4.2563 2.7816 17 7 4.7686 -5.1605 3.5034 18 14 5.8508 -2.6103 3.5374 19 1 7.2034 -2.7022 4.1435 20 1 5.8508 -1.5644 2.4832 21 1 4.8614 -2.2558 4.5865 22 8 5.6354 -2.3017 0.5680 23 6 2.1994 -1.1988 -0.0005 24 9 1.5247 -2.3692 -0.0016 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6584 2.1322 0.0004 29 1 4.1200 2.1328 -0.0010 30 1 5.3532 0.0019 0.0105 31 1 4.9968 -2.2527 -2.0382 32 1 3.5001 -3.2006 -1.8593 33 1 5.4624 -4.6349 -2.4608 34 1 4.7731 -5.0698 -0.8776 35 1 7.2149 -3.2993 -1.3587 36 1 7.2290 -4.9604 -0.7160 37 1 4.5448 -4.9727 4.4283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384679075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -95.628127 kcal Electronic energy + Delta-G solvation = -20817.248584 eV Core-core repulsion = 17665.675242 eV Total energy + Delta-G solvation = -3151.573342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.90754 -40.76485 -39.47685 -34.98322 -34.35462 -34.04913 -32.62772 -30.56071 -27.83611 -27.82242 -25.42653 -23.96351 -22.77796 -22.03130 -20.65067 -18.76030 -18.48744 -17.60518 -17.20350 -16.75844 -16.56018 -15.93229 -15.77945 -15.51276 -15.10770 -14.58892 -14.51599 -14.29983 -14.17358 -14.04464 -13.61972 -13.50053 -13.27182 -12.83758 -12.71549 -12.56330 -12.27217 -12.03765 -11.99453 -11.80083 -11.60549 -11.36866 -10.82165 -10.69701 -10.00212 -9.55509 -9.46157 -8.34879 -6.45053 0.21258 0.28712 1.33226 1.38399 1.66516 2.40118 2.63515 2.90890 3.19874 3.39280 3.75392 3.86364 4.05605 4.10286 4.14698 4.27587 4.38480 4.40442 4.43437 4.62594 4.72272 4.74703 4.84088 4.87334 4.93102 5.08208 5.10106 5.19442 5.24817 5.25073 5.31550 5.37003 5.44617 5.52002 5.56674 5.65814 6.01628 6.08716 6.63954 6.76428 7.30893 8.79436 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.008294 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.237591 B = 3375.169391 C = 3708.596361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.089 4.089 6 C -0.123 4.123 7 C 0.139 3.861 8 H 0.033 0.967 9 C -0.123 4.123 10 C -0.109 4.109 11 C -0.126 4.126 12 C 0.171 3.829 13 H 0.068 0.932 14 C -0.541 4.541 15 H 0.037 0.963 16 C 0.027 3.973 17 N -0.941 5.941 18 Si 0.918 3.082 19 H -0.276 1.276 20 H -0.198 1.198 21 H -0.304 1.304 22 O -0.387 6.387 23 C 0.066 3.934 24 F -0.154 7.154 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 15.420 -10.333 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.138 4.138 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.080 3.920 8 H 0.051 0.949 9 C -0.161 4.161 10 C -0.146 4.146 11 C -0.164 4.164 12 C 0.115 3.885 13 H 0.085 0.915 14 C -0.579 4.579 15 H 0.056 0.944 16 C -0.172 4.172 17 N -0.581 5.581 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.120 1.120 21 H -0.232 1.232 22 O -0.307 6.307 23 C 0.047 3.953 24 F -0.132 7.132 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.187 0.813 29 H 0.180 0.820 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.222 15.508 -10.143 19.006 hybrid contribution -0.134 -1.047 1.013 1.463 sum -4.356 14.461 -9.130 17.648 Atomic orbital electron populations 1.20764 0.88444 1.04135 1.03289 1.20262 0.98339 0.91294 1.02925 1.21330 0.94160 0.97399 0.98170 1.21595 0.94632 0.98369 0.99209 1.21087 1.01100 0.90890 0.97670 1.20011 0.91925 0.96836 1.03605 1.20252 0.85623 0.92180 0.93897 0.94884 1.21951 1.00356 0.98141 0.95650 1.21443 0.96152 0.96760 1.00291 1.21919 0.97167 1.00980 0.96337 1.20149 0.91231 0.83338 0.93746 0.91471 1.21675 1.38252 1.01666 0.96264 0.94443 1.25817 0.93578 1.00044 0.97728 1.70088 1.41994 1.36879 1.09160 0.86275 0.77287 0.83493 0.78760 1.20188 1.12009 1.23173 1.87925 1.25774 1.35128 1.81865 1.17764 0.89352 0.81716 1.06469 1.91419 1.80336 1.47306 1.94186 0.90532 0.87968 0.92238 0.81264 0.81958 0.84655 0.90212 0.91963 0.90178 0.94286 0.90677 0.91873 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.84 71.23 0.70 -1.56 16 2 C -0.13 -3.43 5.89 -19.82 -0.12 -3.55 16 3 C -0.09 -1.97 9.70 22.26 0.22 -1.76 16 4 C -0.12 -2.75 10.04 22.27 0.22 -2.53 16 5 C -0.09 -2.79 9.35 22.26 0.21 -2.58 16 6 C -0.12 -4.61 5.08 -19.82 -0.10 -4.71 16 7 C 0.14 5.98 2.36 29.88 0.07 6.06 16 8 H 0.03 1.77 6.74 -2.39 -0.02 1.75 16 9 C -0.12 -4.52 5.40 30.68 0.17 -4.36 16 10 C -0.11 -4.09 5.78 30.71 0.18 -3.92 16 11 C -0.13 -4.86 5.59 30.69 0.17 -4.69 16 12 C 0.17 7.97 2.65 29.88 0.08 8.05 16 13 H 0.07 3.06 7.57 -2.39 -0.02 3.04 16 14 C -0.54 -30.88 7.17 25.60 0.18 -30.69 16 15 H 0.04 2.36 7.11 -2.91 -0.02 2.34 16 16 C 0.03 1.63 5.47 84.66 0.46 2.09 16 17 N -0.94 -60.57 13.96 21.45 0.30 -60.27 16 18 Si 0.92 46.02 26.99 68.60 1.85 47.87 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.20 -9.30 5.31 99.48 0.53 -8.77 16 21 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 22 O -0.39 -17.37 5.88 -148.98 -0.88 -18.24 16 23 C 0.07 2.36 7.18 22.38 0.16 2.52 16 24 F -0.15 -6.14 15.78 44.97 0.71 -5.43 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.40 8.09 -2.38 -0.02 1.38 16 27 H 0.06 1.33 7.64 -2.39 -0.02 1.31 16 28 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.14 4.20 7.34 -2.91 -0.02 4.18 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.72 6.85 -2.39 -0.02 1.71 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -70.39 298.25 5.47 -64.92 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.88 Total: 12.78 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 2.60 Total: -41.62 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.30 Total: -60.27 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.88 Total: -18.24 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.71 Total: -5.43 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.85 Total: 47.87 kcal Total: -70.39 5.47 -64.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.709 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds