Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38214 * 120.01396 * 2 1 4 4 C 1.38219 * 120.02547 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.05332 * 359.97438 * 4 3 2 6 6 C 1.38179 * 120.02624 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.01408 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47904 * 144.97838 * 7 6 5 9 9 C 1.53092 * 109.48158 * 264.99881 * 7 6 5 10 10 C 1.53181 * 109.16239 * 177.59062 * 9 7 6 11 11 C 1.53178 * 109.03781 * 303.02236 * 10 9 7 12 12 C 1.53100 * 109.16203 * 56.97847 * 11 10 9 13 13 H 1.09006 * 109.47357 * 62.38692 * 12 11 10 14 14 C 1.50696 * 109.47750 * 182.40436 * 12 11 10 15 15 H 1.07999 * 120.00319 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.42898 * 109.42360 * 302.39741 * 12 11 10 23 23 C 1.38441 * 120.00851 * 180.26914 * 2 1 3 24 24 F 1.35098 * 120.03112 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47042 * 90.00098 * 1 2 3 26 26 H 1.09001 * 109.47070 * 210.00035 * 1 2 3 27 27 H 1.08994 * 109.46889 * 330.00160 * 1 2 3 28 28 H 1.07999 * 119.98305 * 0.04483 * 3 2 1 29 29 H 1.08001 * 119.97372 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.99145 * 180.02562 * 5 4 3 31 31 H 1.09008 * 109.51721 * 57.69104 * 9 7 6 32 32 H 1.08991 * 109.52451 * 297.50150 * 9 7 6 33 33 H 1.08997 * 109.54119 * 183.15795 * 10 9 7 34 34 H 1.08998 * 109.61423 * 62.93390 * 10 9 7 35 35 H 1.08992 * 109.52297 * 297.07744 * 11 10 9 36 36 H 1.08991 * 109.57534 * 176.91403 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0005 -0.0005 6 6 3.5843 -1.1973 0.0005 7 6 4.3396 -2.5014 0.0011 8 1 3.7937 -3.2373 0.5916 9 6 4.4860 -3.0072 -1.4364 10 6 5.3061 -4.3010 -1.4331 11 6 6.6608 -4.0321 -0.7705 12 6 6.4302 -3.4867 0.6413 13 1 5.9121 -4.2357 1.2402 14 6 7.7573 -3.1641 1.2783 15 1 8.6736 -3.3315 0.7317 16 6 7.8017 -2.6552 2.5590 17 7 8.9598 -2.3731 3.1147 18 14 6.2169 -2.3663 3.5046 19 1 5.7271 -0.9894 3.2410 20 1 5.1929 -3.3484 3.0663 21 1 6.4709 -2.5314 4.9584 22 8 5.6356 -2.3012 0.5689 23 6 2.1994 -1.1988 -0.0056 24 9 1.5248 -2.3693 -0.0117 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6584 2.1321 0.0007 29 1 4.1200 2.1328 -0.0001 30 1 5.3533 0.0019 -0.0005 31 1 4.9960 -2.2542 -2.0373 32 1 3.4993 -3.2024 -1.8561 33 1 5.4619 -4.6365 -2.4583 34 1 4.7733 -5.0705 -0.8745 35 1 7.2146 -3.2999 -1.3579 36 1 7.2302 -4.9598 -0.7141 37 1 8.9910 -2.0148 4.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384679076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = -83.031405 kcal Electronic energy + Delta-G solvation = -20496.705025 eV Core-core repulsion = 17345.677918 eV Total energy + Delta-G solvation = -3151.027107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.75396 -39.41951 -38.08564 -33.57623 -32.92256 -32.39107 -31.36439 -29.26827 -26.88240 -25.98746 -24.09128 -22.14481 -21.51554 -20.66992 -19.41709 -17.36178 -16.89666 -16.39810 -15.68046 -15.56276 -14.97203 -14.70594 -14.17398 -13.96256 -13.87424 -13.43587 -13.27630 -13.11605 -12.91597 -12.46118 -12.35445 -12.21946 -11.69942 -11.60448 -11.14049 -11.02355 -10.85078 -10.71970 -10.50519 -10.11363 -10.00336 -9.63169 -9.12483 -8.72310 -8.60938 -8.47914 -8.23329 -6.14275 -4.22988 1.29661 1.36113 3.42135 3.45676 3.56121 3.71262 4.27706 4.46424 4.53099 4.76988 4.94714 5.04993 5.24743 5.33632 5.35279 5.43716 5.47928 5.50588 5.54283 5.72562 5.81444 5.86947 5.90213 6.07663 6.19037 6.19632 6.31833 6.38122 6.45477 6.55332 6.61702 6.63357 6.65932 6.76559 7.06765 7.18625 7.60805 8.37919 8.46375 8.87813 9.48928 10.95510 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.007506 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.431300 B = 3729.312956 C = 4376.326583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.102 4.102 4 C -0.130 4.130 5 C -0.067 4.067 6 C -0.099 4.099 7 C 0.120 3.880 8 H 0.056 0.944 9 C -0.135 4.135 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.181 3.819 13 H 0.018 0.982 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.085 3.915 17 N -0.890 5.890 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.271 1.271 21 H -0.302 1.302 22 O -0.373 6.373 23 C 0.096 3.904 24 F -0.139 7.139 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.839 4.450 -7.805 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.129 4.129 3 C -0.120 4.120 4 C -0.148 4.148 5 C -0.085 4.085 6 C -0.100 4.100 7 C 0.062 3.938 8 H 0.074 0.926 9 C -0.172 4.172 10 C -0.160 4.160 11 C -0.171 4.171 12 C 0.126 3.874 13 H 0.035 0.965 14 C -0.548 4.548 15 H 0.100 0.900 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.230 1.230 22 O -0.294 6.294 23 C 0.077 3.923 24 F -0.118 7.118 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.701 4.633 -7.595 17.183 hybrid contribution -0.921 -0.209 0.491 1.064 sum -15.622 4.424 -7.103 17.722 Atomic orbital electron populations 1.20667 0.90445 1.03023 1.02430 1.19801 0.96663 0.91886 1.04596 1.20848 0.94213 0.96631 1.00271 1.21241 0.94050 0.98449 1.01047 1.21116 1.01678 0.90364 0.95369 1.19928 0.91178 0.97005 1.01927 1.20564 0.87665 0.91678 0.93917 0.92578 1.22067 0.99984 0.98359 0.96826 1.21650 0.97400 0.96563 1.00345 1.22059 0.95282 1.01231 0.98551 1.20345 0.90971 0.84134 0.91915 0.96453 1.20931 0.90361 1.44714 0.98805 0.90006 1.25054 0.96439 0.93052 0.97478 1.69928 1.24884 1.42547 1.15306 0.86384 0.83500 0.79909 0.76861 1.19853 1.19616 1.22966 1.88204 1.23092 1.37393 1.80691 1.17322 0.89123 0.80975 1.04910 1.91439 1.80199 1.46175 1.93972 0.91138 0.91422 0.91204 0.85480 0.85407 0.83661 0.91206 0.92168 0.92412 0.92480 0.91809 0.91750 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.83 36.01 0.35 -0.78 16 2 C -0.13 -1.75 5.89 -104.55 -0.62 -2.37 16 3 C -0.10 -1.27 9.70 -39.60 -0.38 -1.66 16 4 C -0.13 -1.80 10.04 -39.58 -0.40 -2.20 16 5 C -0.07 -1.15 9.35 -39.59 -0.37 -1.52 16 6 C -0.10 -1.79 5.07 -104.55 -0.53 -2.32 16 7 C 0.12 2.37 2.63 -27.84 -0.07 2.29 16 8 H 0.06 1.15 7.80 -51.93 -0.41 0.74 16 9 C -0.13 -2.28 5.40 -26.59 -0.14 -2.42 16 10 C -0.12 -2.05 6.03 -26.55 -0.16 -2.21 16 11 C -0.13 -2.68 5.36 -26.59 -0.14 -2.82 16 12 C 0.18 4.38 1.98 -27.83 -0.06 4.32 16 13 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 14 C -0.51 -14.49 9.38 -34.44 -0.32 -14.81 16 15 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 16 C 0.08 2.47 5.47 -17.82 -0.10 2.38 16 17 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 18 Si 0.90 23.47 26.18 -169.99 -4.45 19.02 16 19 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 O -0.37 -8.73 6.58 -35.23 -0.23 -8.97 16 23 C 0.10 1.57 7.18 -39.42 -0.28 1.28 16 24 F -0.14 -2.28 15.79 2.25 0.04 -2.24 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.15 2.67 7.35 -52.48 -0.39 2.28 16 31 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -30.69 304.06 -7.88 -38.57 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.37 Total: -1.77 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.22 Total: -22.83 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.23 Total: -8.97 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.45 Total: 19.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.69 -7.88 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.458 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds