Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38214 * 120.01396 * 2 1 4 4 C 1.38219 * 120.02547 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.05332 * 359.97438 * 4 3 2 6 6 C 1.38179 * 120.02624 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.01408 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47904 * 144.97838 * 7 6 5 9 9 C 1.53092 * 109.48158 * 264.99881 * 7 6 5 10 10 C 1.53181 * 109.16239 * 177.59062 * 9 7 6 11 11 C 1.53178 * 109.03781 * 303.02236 * 10 9 7 12 12 C 1.53100 * 109.16203 * 56.97847 * 11 10 9 13 13 H 1.09006 * 109.47357 * 62.38692 * 12 11 10 14 14 C 1.50696 * 109.47750 * 182.40436 * 12 11 10 15 15 H 1.07999 * 120.00319 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.42898 * 109.42360 * 302.39741 * 12 11 10 23 23 C 1.38441 * 120.00851 * 180.26914 * 2 1 3 24 24 F 1.35098 * 120.03112 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47042 * 90.00098 * 1 2 3 26 26 H 1.09001 * 109.47070 * 210.00035 * 1 2 3 27 27 H 1.08994 * 109.46889 * 330.00160 * 1 2 3 28 28 H 1.07999 * 119.98305 * 0.04483 * 3 2 1 29 29 H 1.08001 * 119.97372 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.99145 * 180.02562 * 5 4 3 31 31 H 1.09008 * 109.51721 * 57.69104 * 9 7 6 32 32 H 1.08991 * 109.52451 * 297.50150 * 9 7 6 33 33 H 1.08997 * 109.54119 * 183.15795 * 10 9 7 34 34 H 1.08998 * 109.61423 * 62.93390 * 10 9 7 35 35 H 1.08992 * 109.52297 * 297.07744 * 11 10 9 36 36 H 1.08991 * 109.57534 * 176.91403 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0005 -0.0005 6 6 3.5843 -1.1973 0.0005 7 6 4.3396 -2.5014 0.0011 8 1 3.7937 -3.2373 0.5916 9 6 4.4860 -3.0072 -1.4364 10 6 5.3061 -4.3010 -1.4331 11 6 6.6608 -4.0321 -0.7705 12 6 6.4302 -3.4867 0.6413 13 1 5.9121 -4.2357 1.2402 14 6 7.7573 -3.1641 1.2783 15 1 8.6736 -3.3315 0.7317 16 6 7.8017 -2.6552 2.5590 17 7 8.9598 -2.3731 3.1147 18 14 6.2169 -2.3663 3.5046 19 1 5.7271 -0.9894 3.2410 20 1 5.1929 -3.3484 3.0663 21 1 6.4709 -2.5314 4.9584 22 8 5.6356 -2.3012 0.5689 23 6 2.1994 -1.1988 -0.0056 24 9 1.5248 -2.3693 -0.0117 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6584 2.1321 0.0007 29 1 4.1200 2.1328 -0.0001 30 1 5.3533 0.0019 -0.0005 31 1 4.9960 -2.2542 -2.0373 32 1 3.4993 -3.2024 -1.8561 33 1 5.4619 -4.6365 -2.4583 34 1 4.7733 -5.0705 -0.8745 35 1 7.2146 -3.2999 -1.3579 36 1 7.2302 -4.9598 -0.7141 37 1 8.9910 -2.0148 4.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384679076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = -99.993439 kcal Electronic energy + Delta-G solvation = -20497.440554 eV Core-core repulsion = 17345.677918 eV Total energy + Delta-G solvation = -3151.762636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.96427 -40.80280 -39.50103 -35.26753 -34.46768 -34.09386 -32.70942 -30.79242 -27.86500 -27.80151 -25.57936 -23.72017 -22.78236 -22.05899 -20.99386 -19.10422 -18.47255 -17.70064 -17.21231 -16.80137 -16.61584 -16.15758 -15.94222 -15.46508 -15.22032 -14.84094 -14.42385 -14.36077 -14.32011 -14.16687 -13.69529 -13.31767 -13.03968 -12.96718 -12.78507 -12.63589 -12.45396 -12.10495 -12.03966 -11.89857 -11.76201 -11.42472 -11.05263 -10.83330 -10.25514 -9.64281 -9.58078 -8.41148 -6.52781 0.13981 0.22325 1.29386 1.35132 1.45343 2.30294 2.54864 2.69076 3.19473 3.32543 3.66752 3.81136 3.96047 3.98460 4.01195 4.13693 4.23906 4.30148 4.36231 4.41277 4.64677 4.67844 4.76896 4.82930 4.87794 4.93228 5.00732 5.03947 5.12744 5.16046 5.22682 5.28844 5.40608 5.45936 5.51919 5.54584 5.94704 6.18385 6.49146 6.75013 7.22985 8.72631 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.007506 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.431300 B = 3729.312956 C = 4376.326583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.124 4.124 5 C -0.094 4.094 6 C -0.124 4.124 7 C 0.114 3.886 8 H 0.044 0.956 9 C -0.127 4.127 10 C -0.115 4.115 11 C -0.129 4.129 12 C 0.182 3.818 13 H 0.009 0.991 14 C -0.520 4.520 15 H 0.051 0.949 16 C 0.037 3.963 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.274 1.274 20 H -0.267 1.267 21 H -0.294 1.294 22 O -0.391 6.391 23 C 0.077 3.923 24 F -0.144 7.144 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 5.691 -8.785 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.142 4.142 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.056 3.944 8 H 0.061 0.939 9 C -0.165 4.165 10 C -0.152 4.152 11 C -0.167 4.167 12 C 0.127 3.873 13 H 0.027 0.973 14 C -0.557 4.557 15 H 0.069 0.931 16 C -0.163 4.163 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.200 1.200 20 H -0.192 1.192 21 H -0.221 1.221 22 O -0.312 6.312 23 C 0.058 3.942 24 F -0.123 7.123 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.188 0.812 29 H 0.171 0.829 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.964 5.865 -8.586 20.756 hybrid contribution 0.064 -0.539 0.736 0.915 sum -17.899 5.325 -7.850 20.257 Atomic orbital electron populations 1.20775 0.87849 1.04063 1.03800 1.20273 0.98552 0.91091 1.02474 1.21327 0.93606 0.97939 0.97864 1.21548 0.95052 0.98106 0.99496 1.21039 1.00711 0.91726 0.97777 1.19867 0.92096 0.96269 1.04298 1.20749 0.85566 0.92996 0.95061 0.93850 1.22022 1.01190 0.98240 0.95057 1.21628 0.95005 0.96725 1.01873 1.21959 0.97617 1.00874 0.96248 1.20127 0.89101 0.84132 0.93951 0.97336 1.21199 0.91550 1.44022 0.98954 0.93087 1.25753 0.98953 0.93128 0.98499 1.70025 1.26668 1.44377 1.15987 0.85506 0.80226 0.79587 0.75978 1.20004 1.19189 1.22093 1.88077 1.25025 1.36541 1.81569 1.17504 0.88591 0.81897 1.06183 1.91419 1.80083 1.46640 1.94152 0.89468 0.91996 0.88611 0.81215 0.82859 0.86234 0.91234 0.89963 0.89173 0.91814 0.92624 0.91344 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.83 71.24 0.70 -1.09 16 2 C -0.12 -2.94 5.89 -19.82 -0.12 -3.06 16 3 C -0.09 -1.87 9.70 22.26 0.22 -1.65 16 4 C -0.12 -3.13 10.04 22.27 0.22 -2.90 16 5 C -0.09 -3.20 9.35 22.26 0.21 -2.99 16 6 C -0.12 -4.42 5.07 -19.82 -0.10 -4.52 16 7 C 0.11 4.49 2.63 29.88 0.08 4.56 16 8 H 0.04 1.78 7.80 -2.38 -0.02 1.76 16 9 C -0.13 -4.15 5.40 30.69 0.17 -3.98 16 10 C -0.11 -3.65 6.03 30.71 0.19 -3.46 16 11 C -0.13 -5.20 5.36 30.69 0.16 -5.04 16 12 C 0.18 9.00 1.98 29.88 0.06 9.06 16 13 H 0.01 0.46 7.20 -2.38 -0.02 0.44 16 14 C -0.52 -30.65 9.38 25.60 0.24 -30.41 16 15 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 16 C 0.04 2.25 5.47 84.66 0.46 2.71 16 17 N -0.93 -58.72 13.96 21.45 0.30 -58.42 16 18 Si 0.96 49.57 26.18 68.60 1.80 51.36 16 19 H -0.27 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.27 -13.44 6.54 99.48 0.65 -12.79 16 21 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 22 O -0.39 -18.66 6.58 -148.98 -0.98 -19.64 16 23 C 0.08 2.40 7.18 22.38 0.16 2.56 16 24 F -0.14 -4.52 15.79 44.97 0.71 -3.81 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.12 7.65 -2.39 -0.02 1.10 16 27 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 28 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.12 4.57 7.35 -2.91 -0.02 4.55 16 31 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -69.07 304.06 5.47 -63.60 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.99 Total: 7.10 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 2.65 Total: -40.21 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.98 Total: -19.64 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.71 Total: -3.81 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.80 Total: 51.36 kcal Total: -69.07 5.47 -63.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.389 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds