Wall clock time and date at job start Mon Mar 30 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38220 * 120.01142 * 2 1 4 4 C 1.38221 * 120.02713 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.05152 * 359.97438 * 4 3 2 6 6 C 1.38176 * 120.02577 * 0.04106 * 5 4 3 7 7 C 1.50701 * 120.01208 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.48641 * 214.97147 * 7 6 5 9 9 C 1.53097 * 109.47887 * 94.94645 * 7 6 5 10 10 C 1.53180 * 109.21119 * 182.44084 * 9 7 6 11 11 C 1.53177 * 109.03525 * 56.88485 * 10 9 7 12 12 C 1.53098 * 109.21356 * 303.11207 * 11 10 9 13 13 H 1.08998 * 109.47939 * 297.58076 * 12 11 10 14 14 C 1.50696 * 109.47974 * 177.55704 * 12 11 10 15 15 H 1.08004 * 119.99873 * 0.02562 * 14 12 11 16 16 C 1.37868 * 120.00258 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00431 * 180.02562 * 16 14 12 18 18 Si 1.86804 * 119.99988 * 0.02562 * 16 14 12 19 19 H 1.48502 * 109.47266 * 89.99478 * 18 16 14 20 20 H 1.48494 * 109.47406 * 209.99804 * 18 16 14 21 21 H 1.48501 * 109.46704 * 329.99725 * 18 16 14 22 22 O 1.42898 * 109.48385 * 335.00405 * 7 6 5 23 23 C 1.38431 * 120.01551 * 180.26752 * 2 1 3 24 24 F 1.35098 * 120.02857 * 0.04349 * 23 2 1 25 25 H 1.09000 * 109.46662 * 90.00696 * 1 2 3 26 26 H 1.08999 * 109.46977 * 210.00005 * 1 2 3 27 27 H 1.08995 * 109.47216 * 330.00654 * 1 2 3 28 28 H 1.07999 * 119.98939 * 359.94653 * 3 2 1 29 29 H 1.08004 * 119.97341 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.98621 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.52138 * 302.31104 * 9 7 6 32 32 H 1.09003 * 109.52113 * 62.50014 * 9 7 6 33 33 H 1.09005 * 109.49724 * 297.04659 * 10 9 7 34 34 H 1.09005 * 109.59319 * 176.78366 * 10 9 7 35 35 H 1.09002 * 109.52487 * 183.17418 * 11 10 9 36 36 H 1.09004 * 109.52023 * 63.05037 * 11 10 9 37 37 H 0.97006 * 120.00311 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2733 0.0007 0.0016 6 6 3.5843 -1.1971 0.0013 7 6 4.3397 -2.5011 0.0019 8 1 3.7937 -3.2379 -0.5874 9 6 4.4870 -3.0052 1.4400 10 6 5.3077 -4.2985 1.4392 11 6 6.6614 -4.0308 0.7741 12 6 6.4300 -3.4872 -0.6383 13 1 5.9116 -4.2369 -1.2359 14 6 7.7567 -3.1652 -1.2764 15 1 8.6733 -3.3318 -0.7300 16 6 7.8005 -2.6590 -2.5580 17 7 8.9583 -2.3784 -3.1151 18 14 6.2152 -2.3715 -3.5033 19 1 5.7259 -0.9939 -3.2421 20 1 6.4681 -2.5395 -4.9569 21 1 5.1912 -3.3524 -3.0624 22 8 5.6354 -2.3016 -0.5666 23 6 2.1995 -1.1987 -0.0056 24 9 1.5249 -2.3691 -0.0119 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1322 -0.0009 29 1 4.1199 2.1330 0.0001 30 1 5.3532 0.0022 0.0024 31 1 4.9973 -2.2514 2.0396 32 1 3.5004 -3.2000 1.8605 33 1 4.7735 -5.0681 0.8820 34 1 5.4650 -4.6322 2.4649 35 1 7.2299 -4.9592 0.7185 36 1 7.2165 -3.2982 1.3601 37 1 8.9891 -2.0219 -4.0167 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384679077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:07 Heat of formation + Delta-G solvation = -83.043141 kcal Electronic energy + Delta-G solvation = -20496.286907 eV Core-core repulsion = 17345.259291 eV Total energy + Delta-G solvation = -3151.027616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.75418 -39.41902 -38.08519 -33.57626 -32.92266 -32.39199 -31.36405 -29.26922 -26.88254 -25.98831 -24.09213 -22.14450 -21.51804 -20.66885 -19.41346 -17.36175 -16.89536 -16.40144 -15.68597 -15.55599 -14.96803 -14.70669 -14.17312 -13.97177 -13.87205 -13.44173 -13.26491 -13.11708 -12.91816 -12.44925 -12.36771 -12.22556 -11.69111 -11.60743 -11.14153 -11.02294 -10.84954 -10.72017 -10.50401 -10.11353 -10.00243 -9.63171 -9.12613 -8.72199 -8.61051 -8.47912 -8.23476 -6.14244 -4.23034 1.29678 1.36078 3.42110 3.45618 3.56059 3.71262 4.27782 4.46387 4.53046 4.76994 4.94755 5.04868 5.24549 5.33459 5.35552 5.43813 5.48175 5.50239 5.54783 5.72545 5.81261 5.87028 5.90228 6.07655 6.18993 6.19576 6.31779 6.38165 6.45429 6.55287 6.61711 6.63341 6.65980 6.76539 7.06750 7.18598 7.60773 8.37882 8.46391 8.87769 9.48951 10.95520 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.007506 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.114337 B = 3729.648547 C = 4373.347204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.130 4.130 5 C -0.067 4.067 6 C -0.099 4.099 7 C 0.120 3.880 8 H 0.056 0.944 9 C -0.135 4.135 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.181 3.819 13 H 0.018 0.982 14 C -0.511 4.511 15 H 0.082 0.918 16 C 0.085 3.915 17 N -0.890 5.890 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.302 1.302 21 H -0.271 1.271 22 O -0.373 6.373 23 C 0.096 3.904 24 F -0.139 7.139 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.833 4.463 7.790 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.148 4.148 5 C -0.085 4.085 6 C -0.100 4.100 7 C 0.062 3.938 8 H 0.074 0.926 9 C -0.172 4.172 10 C -0.160 4.160 11 C -0.171 4.171 12 C 0.126 3.874 13 H 0.036 0.964 14 C -0.548 4.548 15 H 0.100 0.900 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.230 1.230 21 H -0.196 1.196 22 O -0.294 6.294 23 C 0.077 3.923 24 F -0.118 7.118 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.696 4.645 7.580 17.176 hybrid contribution -0.922 -0.210 -0.503 1.071 sum -15.618 4.435 7.077 17.711 Atomic orbital electron populations 1.20666 0.90446 1.02926 1.02530 1.19798 0.96663 0.91887 1.04604 1.20850 0.94214 0.96629 1.00264 1.21243 0.94051 0.98450 1.01054 1.21115 1.01676 0.90363 0.95358 1.19926 0.91178 0.97002 1.01940 1.20562 0.87670 0.91685 0.93908 0.92575 1.22068 0.99970 0.98378 0.96822 1.21653 0.97395 0.96576 1.00335 1.22061 0.95294 1.01231 0.98536 1.20343 0.90971 0.84134 0.91912 0.96450 1.20926 0.90367 1.44779 0.98731 0.90005 1.25046 0.96434 0.93050 0.97476 1.69925 1.24901 1.42617 1.15228 0.86387 0.83517 0.79906 0.76867 1.19856 1.22963 1.19613 1.88205 1.23115 1.37408 1.80657 1.17322 0.89131 0.80974 1.04894 1.91439 1.80203 1.46172 1.93973 0.91118 0.91429 0.91211 0.85479 0.85405 0.83661 0.91212 0.92181 0.92492 0.92389 0.91761 0.91807 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.83 36.01 0.35 -0.78 16 2 C -0.13 -1.76 5.89 -104.56 -0.62 -2.37 16 3 C -0.10 -1.27 9.70 -39.59 -0.38 -1.65 16 4 C -0.13 -1.80 10.04 -39.58 -0.40 -2.20 16 5 C -0.07 -1.15 9.35 -39.59 -0.37 -1.52 16 6 C -0.10 -1.80 5.07 -104.55 -0.53 -2.33 16 7 C 0.12 2.37 2.64 -27.83 -0.07 2.29 16 8 H 0.06 1.15 7.78 -51.93 -0.40 0.75 16 9 C -0.13 -2.28 5.40 -26.59 -0.14 -2.42 16 10 C -0.12 -2.05 6.03 -26.55 -0.16 -2.21 16 11 C -0.13 -2.68 5.35 -26.59 -0.14 -2.82 16 12 C 0.18 4.38 1.98 -27.83 -0.06 4.33 16 13 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 14 C -0.51 -14.49 9.37 -34.45 -0.32 -14.81 16 15 H 0.08 2.46 7.99 -52.48 -0.42 2.04 16 16 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 17 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 18 Si 0.90 23.47 26.18 -169.99 -4.45 19.01 16 19 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 22 O -0.37 -8.74 6.58 -35.23 -0.23 -8.97 16 23 C 0.10 1.57 7.18 -39.42 -0.28 1.29 16 24 F -0.14 -2.28 15.78 2.25 0.04 -2.25 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 30 H 0.15 2.67 7.35 -52.49 -0.39 2.28 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -30.69 304.05 -7.89 -38.58 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.37 Total: -1.77 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -3.22 Total: -22.82 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.23 Total: -8.97 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.45 Total: 19.01 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.69 -7.89 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384679077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.467 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds