Wall clock time and date at job start Mon Mar 30 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.35912 * 117.00151 * 180.02562 * 13 12 11 15 15 C 1.38861 * 119.97802 * 359.71816 * 14 13 12 16 16 C 1.38254 * 120.24283 * 179.77079 * 15 14 13 17 17 C 1.37994 * 120.21443 * 0.50865 * 16 15 14 18 18 C 1.39614 * 119.95898 * 359.74666 * 17 16 15 19 19 C 1.47741 * 120.12401 * 180.02562 * 18 17 16 20 20 O 1.21463 * 120.00306 * 179.97438 * 19 18 17 21 21 O 1.34716 * 119.99529 * 359.97438 * 19 18 17 22 22 C 1.38437 * 119.97939 * 180.02562 * 14 13 12 23 23 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 25 25 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 26 26 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 27 27 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 28 28 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 29 29 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 30 30 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 31 31 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 32 32 H 1.07996 * 119.87989 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.89073 * 180.23907 * 16 15 14 34 34 H 1.07995 * 120.01806 * 179.76927 * 17 16 15 35 35 H 0.96697 * 116.99635 * 179.97438 * 21 19 18 36 36 H 1.07997 * 120.11394 * 359.94969 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 8 7.4906 -4.0789 0.0045 14 6 8.1077 -5.2899 0.0046 15 6 7.3510 -6.4542 0.0090 16 6 7.9730 -7.6889 0.0044 17 6 9.3504 -7.7726 0.0060 18 6 10.1197 -6.6076 0.0069 19 6 11.5946 -6.6930 0.0080 20 8 12.2618 -5.6780 0.0084 21 8 12.1996 -7.8967 0.0087 22 6 9.4902 -5.3618 0.0068 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.9142 -2.1229 0.8927 29 1 5.9156 -2.1222 -0.8872 30 1 5.6990 -4.5929 -0.8875 31 1 5.6976 -4.5927 0.8925 32 1 6.2727 -6.3950 0.0119 33 1 7.3789 -8.5908 0.0039 34 1 9.8329 -8.7388 0.0061 35 1 13.1665 -7.9020 0.0090 36 1 10.0798 -4.4570 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385283112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:57 Heat of formation + Delta-G solvation = -123.524145 kcal Electronic energy + Delta-G solvation = -18325.591176 eV Core-core repulsion = 15160.435382 eV Total energy + Delta-G solvation = -3165.155794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86678 -39.93120 -37.63293 -36.45434 -34.95876 -32.49585 -31.67411 -30.64383 -29.12346 -25.74243 -24.74634 -22.72672 -22.16094 -20.91795 -20.21429 -18.81885 -18.12783 -16.70991 -16.49656 -16.32720 -16.30403 -15.94339 -15.69815 -14.42264 -14.32721 -14.24015 -13.80201 -13.49034 -12.92869 -12.71254 -12.31394 -12.18777 -12.02293 -11.90000 -11.79046 -11.34625 -11.02012 -11.00086 -10.77950 -10.57259 -9.96683 -9.77944 -9.66735 -9.47480 -9.21589 -8.55814 -8.52709 -6.06438 -4.04870 0.30544 1.07466 2.20135 2.48253 3.18854 3.30228 3.37828 3.41714 3.43517 4.41983 4.43911 4.55150 4.70985 4.80602 4.98205 5.02987 5.12033 5.24461 5.27854 5.39465 5.52600 5.82473 5.83546 5.88343 5.91303 6.01261 6.08803 6.20214 6.30356 6.49475 6.60327 6.82506 7.22900 7.25777 7.38615 7.50210 7.76794 8.50879 8.97847 9.56056 11.06923 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.047281 B = 0.002718 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.057453 B =10299.693891 C =10860.699809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.099 4.099 11 C -0.121 4.121 12 C 0.058 3.942 13 O -0.311 6.311 14 C 0.128 3.872 15 C -0.173 4.173 16 C -0.092 4.092 17 C -0.105 4.105 18 C -0.094 4.094 19 C 0.529 3.471 20 O -0.510 6.510 21 O -0.511 6.511 22 C -0.092 4.092 23 H 0.263 0.737 24 H 0.017 0.983 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.415 0.585 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.258 -17.571 0.037 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.158 4.158 12 C -0.017 4.017 13 O -0.225 6.225 14 C 0.082 3.918 15 C -0.191 4.191 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.095 4.095 19 C 0.374 3.626 20 O -0.399 6.399 21 O -0.323 6.323 22 C -0.111 4.111 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.274 0.726 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.922 -16.966 0.042 26.937 hybrid contribution 0.741 0.755 -0.023 1.058 sum 21.663 -16.211 0.018 27.057 Atomic orbital electron populations 1.69915 1.06316 1.26931 1.51120 1.25046 0.94754 0.99256 0.94527 0.86763 0.80373 0.83525 0.78542 1.20280 1.21389 1.18947 1.21141 0.89493 0.94469 1.50917 0.91054 1.19566 0.97115 0.91973 0.96455 1.21403 0.90352 1.00531 1.01394 1.21735 0.97913 0.92832 1.03330 1.23131 0.76405 1.00719 1.01413 1.86138 1.22800 1.25703 1.87837 1.18815 0.91718 0.85200 0.96045 1.21689 1.01141 0.92285 1.04023 1.20976 0.94262 0.97460 0.98331 1.21322 0.93781 0.97839 0.99416 1.18680 0.88895 0.94142 1.07771 1.20819 0.89050 0.80669 0.72102 1.90910 1.66442 1.36680 1.45838 1.84548 1.28508 1.33408 1.85854 1.20441 0.91882 0.97688 1.01111 0.92720 0.96477 0.96917 0.92493 0.92476 0.91186 0.91186 0.91782 0.91790 0.84353 0.84709 0.84377 0.72627 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.84 5.15 -26.74 -0.14 -1.97 16 11 C -0.12 -1.84 5.58 -26.74 -0.15 -1.99 16 12 C 0.06 0.73 4.74 37.16 0.18 0.91 16 13 O -0.31 -4.23 10.13 -19.46 -0.20 -4.43 16 14 C 0.13 1.53 6.68 -39.28 -0.26 1.27 16 15 C -0.17 -1.70 9.03 -39.34 -0.36 -2.05 16 16 C -0.09 -0.75 10.02 -39.66 -0.40 -1.15 16 17 C -0.11 -0.88 9.61 -39.16 -0.38 -1.26 16 18 C -0.09 -0.96 5.87 -105.00 -0.62 -1.58 16 19 C 0.53 5.32 8.27 34.61 0.29 5.60 16 20 O -0.51 -6.63 17.13 -19.24 -0.33 -6.96 16 21 O -0.51 -3.34 12.68 -40.53 -0.51 -3.85 16 22 C -0.09 -1.08 9.53 -39.01 -0.37 -1.45 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 32 H 0.14 1.19 6.28 -52.49 -0.33 0.86 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.88 7.61 -52.49 -0.40 0.48 16 35 H 0.41 0.85 9.11 45.56 0.42 1.27 16 36 H 0.15 1.75 7.65 -52.49 -0.40 1.35 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -33.47 313.45 -6.94 -40.41 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.98 Total: -2.49 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.75 Total: -17.40 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -1.04 Total: -15.24 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.47 -6.94 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385283112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.112 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds