Wall clock time and date at job start Mon Mar 30 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.35912 * 117.00151 * 180.02562 * 13 12 11 15 15 C 1.38861 * 119.97802 * 359.71816 * 14 13 12 16 16 C 1.38254 * 120.24283 * 179.77079 * 15 14 13 17 17 C 1.37994 * 120.21443 * 0.50865 * 16 15 14 18 18 C 1.39614 * 119.95898 * 359.74666 * 17 16 15 19 19 C 1.47741 * 120.12401 * 180.02562 * 18 17 16 20 20 O 1.21463 * 120.00306 * 179.97438 * 19 18 17 21 21 O 1.34716 * 119.99529 * 359.97438 * 19 18 17 22 22 C 1.38437 * 119.97939 * 180.02562 * 14 13 12 23 23 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 25 25 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 26 26 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 27 27 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 28 28 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 29 29 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 30 30 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 31 31 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 32 32 H 1.07996 * 119.87989 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.89073 * 180.23907 * 16 15 14 34 34 H 1.07995 * 120.01806 * 179.76927 * 17 16 15 35 35 H 0.96697 * 116.99635 * 179.97438 * 21 19 18 36 36 H 1.07997 * 120.11394 * 359.94969 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 8 7.4906 -4.0789 0.0045 14 6 8.1077 -5.2899 0.0046 15 6 7.3510 -6.4542 0.0090 16 6 7.9730 -7.6889 0.0044 17 6 9.3504 -7.7726 0.0060 18 6 10.1197 -6.6076 0.0069 19 6 11.5946 -6.6930 0.0080 20 8 12.2618 -5.6780 0.0084 21 8 12.1996 -7.8967 0.0087 22 6 9.4902 -5.3618 0.0068 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.9142 -2.1229 0.8927 29 1 5.9156 -2.1222 -0.8872 30 1 5.6990 -4.5929 -0.8875 31 1 5.6976 -4.5927 0.8925 32 1 6.2727 -6.3950 0.0119 33 1 7.3789 -8.5908 0.0039 34 1 9.8329 -8.7388 0.0061 35 1 13.1665 -7.9020 0.0090 36 1 10.0798 -4.4570 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385283112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:57 Heat of formation + Delta-G solvation = -145.153980 kcal Electronic energy + Delta-G solvation = -18326.529116 eV Core-core repulsion = 15160.435382 eV Total energy + Delta-G solvation = -3166.093734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.63018 -40.75140 -38.47033 -37.14776 -36.52125 -34.45344 -32.42518 -31.78141 -30.47243 -27.06045 -25.80372 -23.59187 -23.39625 -21.90107 -21.71920 -19.63477 -18.88410 -18.82883 -17.33297 -17.31780 -17.02630 -16.71123 -16.60944 -16.23676 -15.65694 -15.11128 -14.81058 -14.53887 -14.30256 -14.02907 -13.83559 -13.34523 -13.18525 -12.94312 -12.69153 -12.57520 -12.47386 -12.06105 -11.84592 -11.74062 -11.69072 -11.49423 -11.36309 -11.29294 -10.76081 -10.21079 -9.33275 -8.29465 -6.33251 -0.44538 0.33647 1.36374 1.38007 1.45257 1.50028 1.77707 2.34152 2.36320 2.69736 3.06158 3.71884 3.85454 3.96231 3.98544 4.02745 4.16453 4.28369 4.32669 4.46965 4.51486 4.65411 4.76258 4.82440 5.06191 5.11581 5.15035 5.17182 5.21455 5.32449 5.51989 5.53327 5.61351 5.61530 5.67398 6.28183 6.35780 6.75181 6.90944 7.31629 8.87129 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.047281 B = 0.002718 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.057453 B =10299.693891 C =10860.699809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.015 4.015 10 C -0.091 4.091 11 C -0.113 4.113 12 C 0.063 3.937 13 O -0.332 6.332 14 C 0.106 3.894 15 C -0.173 4.173 16 C -0.086 4.086 17 C -0.092 4.092 18 C -0.107 4.107 19 C 0.536 3.464 20 O -0.549 6.549 21 O -0.497 6.497 22 C -0.112 4.112 23 H 0.266 0.734 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.435 0.565 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.860 -19.052 0.022 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.053 4.053 10 C -0.129 4.129 11 C -0.150 4.150 12 C -0.011 4.011 13 O -0.246 6.246 14 C 0.061 3.939 15 C -0.192 4.192 16 C -0.103 4.103 17 C -0.111 4.111 18 C -0.108 4.108 19 C 0.381 3.619 20 O -0.441 6.441 21 O -0.311 6.311 22 C -0.131 4.131 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.182 0.818 35 H 0.298 0.702 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.560 -18.493 0.026 29.171 hybrid contribution 0.235 1.036 -0.019 1.063 sum 22.795 -17.457 0.006 28.712 Atomic orbital electron populations 1.70066 1.08259 1.28129 1.52805 1.26036 0.95634 1.03575 0.94251 0.85657 0.79496 0.78320 0.79176 1.19226 1.21056 1.17058 1.21538 0.92212 0.93162 1.50125 0.94656 1.19556 0.93795 0.95333 0.96578 1.21223 0.92718 0.97371 1.01557 1.21520 0.95341 0.94910 1.03247 1.22986 0.76463 0.98950 1.02750 1.86067 1.22906 1.27073 1.88568 1.18966 0.91850 0.85339 0.97781 1.21930 1.01779 0.92177 1.03268 1.21388 0.94404 0.97983 0.96550 1.21657 0.93981 0.98068 0.97350 1.18820 0.89355 0.94327 1.08296 1.20811 0.89017 0.80902 0.71129 1.90897 1.67206 1.38141 1.47881 1.84494 1.30430 1.31274 1.84919 1.20427 0.92051 0.97981 1.02606 0.92533 0.96259 0.96369 0.92369 0.92400 0.91351 0.91269 0.90452 0.90481 0.83058 0.81297 0.81803 0.70237 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.53 -30.54 9.66 25.60 0.25 -30.30 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.18 16 9 C -0.02 -0.70 4.04 29.85 0.12 -0.58 16 10 C -0.09 -3.28 5.15 30.59 0.16 -3.13 16 11 C -0.11 -3.28 5.58 30.59 0.17 -3.11 16 12 C 0.06 1.50 4.74 71.98 0.34 1.84 16 13 O -0.33 -8.81 10.13 -92.56 -0.94 -9.74 16 14 C 0.11 2.45 6.68 22.47 0.15 2.60 16 15 C -0.17 -2.99 9.03 22.42 0.20 -2.79 16 16 C -0.09 -1.08 10.02 22.22 0.22 -0.86 16 17 C -0.09 -1.27 9.61 22.54 0.22 -1.05 16 18 C -0.11 -2.07 5.87 -20.11 -0.12 -2.19 16 19 C 0.54 10.23 8.27 70.33 0.58 10.81 16 20 O -0.55 -14.41 17.13 19.96 0.34 -14.07 16 21 O -0.50 -5.30 12.68 -56.25 -0.71 -6.01 16 22 C -0.11 -2.63 9.53 22.64 0.22 -2.41 16 23 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 25 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 31 H 0.08 1.61 7.65 -2.39 -0.02 1.60 16 32 H 0.15 2.16 6.28 -2.91 -0.02 2.14 16 33 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.16 1.38 7.61 -2.91 -0.02 1.36 16 35 H 0.44 0.76 9.11 -74.06 -0.67 0.08 16 36 H 0.13 3.33 7.65 -2.91 -0.02 3.31 16 Total: -1.00 -73.86 313.45 4.21 -69.66 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.36 Total: 3.94 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 2.97 Total: -30.61 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.30 Total: -59.56 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.31 Total: -29.83 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -73.86 4.21 -69.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385283112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.497 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds