Wall clock time and date at job start Mon Mar 30 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47360 * 89.99689 * 6 5 4 8 8 C 1.46904 * 111.00227 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47292 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47421 * 54.99949 * 9 8 7 11 11 C 1.47206 * 109.46854 * 294.99930 * 9 8 7 12 12 N 7.46286 * 147.05276 * 82.76889 * 2 1 3 13 13 C 1.52999 * 109.47190 * 175.00410 * 9 8 7 14 14 C 1.50697 * 109.47313 * 184.99866 * 13 9 8 15 15 H 1.08006 * 120.00069 * 359.97438 * 14 13 9 16 16 C 1.37871 * 120.00393 * 179.97438 * 14 13 9 17 17 N 1.31521 * 119.99864 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00320 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46819 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47102 * 120.00141 * 18 16 14 21 21 H 1.48505 * 109.47022 * 239.99677 * 18 16 14 22 22 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 26 26 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 27 27 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 28 28 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 29 29 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 30 30 H 1.00897 * 111.00501 * 303.95167 * 7 6 5 31 31 H 1.08996 * 109.47094 * 300.00055 * 8 7 6 32 32 H 1.09002 * 109.46883 * 59.99781 * 8 7 6 33 33 H 1.08997 * 109.46951 * 304.99328 * 13 9 8 34 34 H 1.09002 * 109.47157 * 64.99741 * 13 9 8 35 35 H 0.96999 * 119.99745 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 7 5.8446 -1.1490 1.3853 8 6 7.2193 -1.6654 1.4245 9 6 7.6605 -1.8315 2.8800 10 1 6.9443 -2.4619 3.4071 11 6 7.7218 -0.5111 3.5279 12 7 7.7696 0.5109 4.0265 13 6 9.0432 -2.4851 2.9225 14 6 9.4248 -2.7608 4.3540 15 1 8.7489 -2.4960 5.1537 16 6 10.6368 -3.3512 4.6430 17 7 11.4597 -3.6741 3.6692 18 14 11.1101 -3.6923 6.4175 19 1 10.0195 -3.2375 7.3169 20 1 11.3278 -5.1498 6.6004 21 1 12.3597 -2.9602 6.7460 22 16 2.5210 -1.4371 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6351 0.0002 28 1 5.4136 -1.9379 -0.5135 29 1 6.0389 -0.2713 -0.5134 30 1 5.7676 -0.2856 1.9017 31 1 7.2592 -2.6311 0.9207 32 1 7.8851 -0.9648 0.9204 33 1 9.0194 -3.4220 2.3660 34 1 9.7760 -1.8144 2.4738 35 1 12.3125 -4.0891 3.8725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390431246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:36 Heat of formation + Delta-G solvation = 21.710758 kcal Electronic energy + Delta-G solvation = -16356.718875 eV Core-core repulsion = 13672.906562 eV Total energy + Delta-G solvation = -2683.812313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32285 -38.59764 -36.60856 -35.48063 -33.83546 -32.39852 -29.51846 -27.62448 -25.15931 -24.02370 -23.58470 -23.21502 -19.68729 -18.60970 -18.24749 -17.98822 -16.67790 -16.57190 -15.98698 -15.80452 -14.94895 -14.87689 -14.65048 -14.27437 -14.17328 -13.94414 -13.85083 -13.58440 -13.23326 -13.08275 -12.88226 -12.71746 -12.58053 -12.46166 -12.33696 -12.29008 -11.95361 -11.56425 -11.41655 -11.15689 -10.55745 -9.57144 -9.34178 -9.27382 -8.20047 -6.27997 0.06615 0.73909 1.14349 1.38809 1.41858 1.52336 1.81446 1.91631 1.94237 2.41268 3.15047 3.23627 3.24080 3.87090 4.03710 4.10931 4.33730 4.40976 4.43992 4.56678 4.70525 4.75390 4.76882 4.84586 4.94534 4.97246 5.12240 5.28490 5.37367 5.47374 5.62212 5.64698 5.79082 5.92212 6.20427 6.25159 6.73919 6.87012 7.40641 8.91035 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.038829 B = 0.003263 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.933913 B = 8580.055190 C = 8669.439795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.187 4.187 3 C -0.155 4.155 4 C -0.141 4.141 5 C -0.186 4.186 6 C 0.129 3.871 7 N -0.689 5.689 8 C 0.078 3.922 9 C 0.019 3.981 10 H 0.122 0.878 11 C 0.251 3.749 12 N -0.505 5.505 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.948 3.052 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.285 1.285 22 S 0.106 5.894 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.336 0.664 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.002 0.998 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 4.666 -11.545 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.305 4.305 3 C -0.184 4.184 4 C -0.172 4.172 5 C -0.304 4.304 6 C -0.001 4.001 7 N -0.320 5.320 8 C -0.052 4.052 9 C -0.003 4.003 10 H 0.139 0.861 11 C -0.065 4.065 12 N -0.183 5.183 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.195 1.195 20 H -0.198 1.198 21 H -0.211 1.211 22 S 0.371 5.629 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.454 3.939 -10.757 23.443 hybrid contribution 1.620 1.765 0.641 2.480 sum -18.833 5.704 -10.115 22.126 Atomic orbital electron populations 1.20433 0.86073 1.03929 1.03654 1.24940 1.01294 0.95552 1.08734 1.20251 0.92626 1.00155 1.05401 1.20319 0.97051 0.96037 1.03814 1.24417 0.98808 0.96586 1.10589 1.20388 0.88673 1.01296 0.89735 1.60592 1.22881 1.35176 1.13394 1.21959 0.87579 1.02142 0.93489 1.19237 1.01269 0.84876 0.94893 0.86058 1.29769 0.90306 0.94461 0.91993 1.81125 1.11749 1.14412 1.10977 1.18990 0.89066 0.95768 0.96198 1.21587 1.02744 1.39594 0.93755 0.92888 1.25706 0.96641 0.95590 1.00841 1.70036 1.10218 1.42943 1.33110 0.85645 0.77989 0.78173 0.80774 1.19451 1.19772 1.21107 1.84271 0.96287 1.09644 1.72729 0.89581 0.89443 0.90890 0.82960 0.84098 0.88776 0.92423 0.84629 0.87261 0.94316 0.94358 0.97955 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.38 71.24 0.74 -0.24 16 2 C -0.19 -3.40 6.51 24.59 0.16 -3.24 16 3 C -0.15 -2.90 10.05 21.22 0.21 -2.68 16 4 C -0.14 -2.93 10.05 21.22 0.21 -2.72 16 5 C -0.19 -4.08 6.02 24.59 0.15 -3.93 16 6 C 0.13 2.76 6.18 85.56 0.53 3.29 16 7 N -0.69 -17.59 6.49 -517.94 -3.36 -20.95 16 8 C 0.08 2.17 5.12 86.30 0.44 2.61 16 9 C 0.02 0.68 2.42 -12.60 -0.03 0.65 16 10 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 11 C 0.25 10.03 12.98 89.42 1.16 11.19 16 12 N -0.51 -21.93 18.55 20.03 0.37 -21.56 16 13 C 0.04 1.77 4.42 29.85 0.13 1.90 16 14 C -0.54 -28.59 8.60 25.60 0.22 -28.37 16 15 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 16 C 0.01 0.61 5.46 84.65 0.46 1.07 16 17 N -0.92 -52.93 13.29 21.45 0.28 -52.64 16 18 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 S 0.11 2.18 23.31 -56.49 -1.32 0.86 16 23 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 27 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.34 9.22 7.80 -89.70 -0.70 8.52 16 31 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.35 321.92 2.78 -59.57 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.39 Total: 9.58 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.39 Total: -20.47 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -2.70 Total: -95.16 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.86 kcal Total: -62.35 2.78 -59.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390431246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.277 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds