Wall clock time and date at job start Mon Mar 30 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 122.53750 * 2 1 4 4 S 1.75899 * 109.59267 * 180.02562 * 3 2 1 5 5 C 1.75890 * 90.96466 * 359.82638 * 4 3 2 6 6 C 1.33380 * 109.59721 * 0.30325 * 5 4 3 7 7 C 1.50701 * 122.54044 * 179.90534 * 6 5 4 8 8 N 1.46901 * 109.46921 * 259.70673 * 7 6 5 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 12 12 C 1.47198 * 109.47439 * 64.99788 * 10 9 8 13 13 N 6.45893 * 96.60555 * 222.72026 * 2 1 3 14 14 C 1.53001 * 109.47271 * 185.00310 * 10 9 8 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 10 9 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 10 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 10 18 18 N 1.31511 * 119.99695 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47419 * 90.00057 * 19 17 15 21 21 H 1.48509 * 109.46723 * 209.99874 * 19 17 15 22 22 H 1.48503 * 109.47194 * 329.99380 * 19 17 15 23 23 H 1.08996 * 109.47061 * 269.98113 * 1 2 3 24 24 H 1.09002 * 109.46658 * 29.98059 * 1 2 3 25 25 H 1.08998 * 109.47100 * 149.97789 * 1 2 3 26 26 H 1.07993 * 125.20721 * 0.05161 * 3 2 1 27 27 H 1.08001 * 125.19518 * 180.17677 * 5 4 3 28 28 H 1.09002 * 109.47060 * 19.70854 * 7 6 5 29 29 H 1.09001 * 109.47380 * 139.70942 * 7 6 5 30 30 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 31 31 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 32 32 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 33 33 H 1.09005 * 109.46867 * 294.99797 * 14 10 9 34 34 H 1.08998 * 109.47402 * 54.99404 * 14 10 9 35 35 H 0.97007 * 119.99642 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2244 1.1245 0.0000 4 16 3.9387 0.7304 -0.0007 5 6 3.5736 -0.9901 0.0043 6 6 2.2516 -1.1670 -0.0005 7 6 1.6165 -2.5336 0.0000 8 7 1.1911 -2.8763 -1.3636 9 6 0.5666 -4.2055 -1.4018 10 6 0.1383 -4.5267 -2.8351 11 1 -0.5079 -3.7320 -3.2080 12 6 1.3307 -4.6319 -3.6917 13 7 2.2500 -4.7137 -4.3528 14 6 -0.6225 -5.8540 -2.8547 15 6 -1.1501 -6.1101 -4.2429 16 1 -0.9621 -5.3973 -5.0322 17 6 -1.8731 -7.2545 -4.5054 18 7 -2.3339 -7.4777 -5.7167 19 14 -2.1990 -8.4870 -3.1401 20 1 -3.4691 -8.1405 -2.4532 21 1 -2.3054 -9.8504 -3.7192 22 1 -1.0815 -8.4502 -2.1628 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8154 2.1239 0.0008 27 1 4.3078 -1.7823 0.0084 28 1 2.3395 -3.2701 0.3510 29 1 0.7500 -2.5314 0.6612 30 1 0.5699 -2.1738 -1.7360 31 1 1.2826 -4.9532 -1.0608 32 1 -0.3071 -4.2153 -0.7502 33 1 0.0496 -6.6623 -2.5666 34 1 -1.4550 -5.8061 -2.1527 35 1 -2.8428 -8.2827 -5.9013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390479494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:48 Heat of formation + Delta-G solvation = 45.924926 kcal Electronic energy + Delta-G solvation = -16759.744184 eV Core-core repulsion = 14076.981876 eV Total energy + Delta-G solvation = -2682.762308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17475 -37.18449 -34.99576 -33.48739 -31.92687 -31.07770 -28.57326 -26.90821 -24.92392 -22.59224 -22.27493 -21.40962 -18.27761 -17.72621 -17.09578 -16.85506 -15.52747 -15.12727 -14.53868 -14.36357 -14.06602 -13.73110 -13.40668 -13.18856 -13.06716 -12.47949 -12.41306 -12.24534 -12.13615 -12.04261 -11.77278 -11.54738 -11.33563 -11.20148 -10.89556 -10.76833 -10.41820 -9.95930 -9.77513 -9.33383 -8.86558 -8.62533 -8.50931 -8.30407 -6.11168 -4.11857 0.88146 1.54255 1.85444 2.46801 3.24933 3.34186 3.34938 3.71882 3.80309 4.33650 4.37648 4.70408 4.76220 4.83614 5.04482 5.15381 5.23587 5.25545 5.36900 5.41855 5.46119 5.52676 5.65001 5.73467 5.86878 6.01465 6.20095 6.28287 6.32143 6.37149 6.90690 6.97321 7.11765 7.39285 7.63129 8.40190 8.56131 8.92702 9.48575 11.01965 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034662 B = 0.003676 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.606231 B = 7614.626092 C = 7862.940308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.093 4.093 3 C -0.220 4.220 4 S 0.082 5.918 5 C -0.189 4.189 6 C -0.096 4.096 7 C 0.118 3.882 8 N -0.687 5.687 9 C 0.063 3.937 10 C 0.020 3.980 11 H 0.104 0.896 12 C 0.252 3.748 13 N -0.470 5.470 14 C -0.005 4.005 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.343 0.657 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 15.599 16.949 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.355 4.355 4 S 0.347 5.653 5 C -0.325 4.325 6 C -0.108 4.108 7 C -0.013 4.013 8 N -0.319 5.319 9 C -0.067 4.067 10 C -0.002 4.002 11 H 0.122 0.878 12 C -0.065 4.065 13 N -0.147 5.147 14 C -0.044 4.044 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.188 1.188 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.179 0.821 27 H 0.182 0.818 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.341 15.990 15.644 24.242 hybrid contribution -2.677 -1.304 1.129 3.185 sum 6.664 14.686 16.773 23.269 Atomic orbital electron populations 1.20563 0.89769 1.02971 1.02312 1.18838 0.97403 0.91660 1.02711 1.25346 0.95724 1.02178 1.12239 1.84225 1.06591 1.00989 1.73490 1.25459 0.99208 0.98702 1.09151 1.18724 0.92677 0.95652 1.03763 1.20550 0.98613 0.91919 0.90198 1.60532 1.46683 1.04245 1.20470 1.22127 0.98083 0.90571 0.95907 1.18944 0.88816 1.02715 0.89743 0.87812 1.28648 0.93395 0.91596 0.92880 1.80966 1.12979 1.10283 1.10444 1.19635 0.95127 0.90483 0.99128 1.21032 1.34156 1.07378 0.94039 0.90776 1.24997 0.95056 0.97687 0.95398 1.69908 1.36427 1.27093 1.20057 0.86815 0.79148 0.80957 0.82621 1.20061 1.21309 1.18846 0.91180 0.91335 0.91383 0.82100 0.81843 0.90201 0.93918 0.83796 0.90347 0.93169 0.95626 0.94937 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.60 36.01 0.35 -0.42 16 2 C -0.09 -0.93 5.80 -106.25 -0.62 -1.54 16 3 C -0.22 -2.06 10.98 29.04 0.32 -1.74 16 4 S 0.08 0.78 23.34 -107.50 -2.51 -1.73 16 5 C -0.19 -2.00 10.95 29.03 0.32 -1.68 16 6 C -0.10 -1.03 5.31 -106.25 -0.56 -1.59 16 7 C 0.12 1.24 5.21 -4.97 -0.03 1.21 16 8 N -0.69 -8.51 6.19 -115.05 -0.71 -9.22 16 9 C 0.06 0.84 5.05 -3.82 -0.02 0.82 16 10 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 11 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 12 C 0.25 5.24 13.67 -20.78 -0.28 4.95 16 13 N -0.47 -10.82 18.53 42.13 0.78 -10.04 16 14 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 15 C -0.53 -14.16 9.15 -34.44 -0.32 -14.47 16 16 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 19 Si 0.88 20.49 27.47 -169.99 -4.67 15.83 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 25 H 0.07 0.55 6.01 -51.93 -0.31 0.23 16 26 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 0.40 7.70 -51.93 -0.40 0.00 16 30 H 0.34 3.98 7.33 -39.29 -0.29 3.69 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 34 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -31.70 314.10 -7.58 -39.28 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.72 Total: 0.05 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.26 Total: -12.66 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.84 Total: -45.50 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.70 -7.58 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390479494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.204 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds