Wall clock time and date at job start Mon Mar 30 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 122.53750 * 2 1 4 4 S 1.75899 * 109.59267 * 180.02562 * 3 2 1 5 5 C 1.75890 * 90.96466 * 359.82638 * 4 3 2 6 6 C 1.33380 * 109.59721 * 0.30325 * 5 4 3 7 7 C 1.50701 * 122.54044 * 179.90534 * 6 5 4 8 8 N 1.46901 * 109.46921 * 259.70673 * 7 6 5 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 12 12 C 1.47198 * 109.47439 * 64.99788 * 10 9 8 13 13 N 6.45893 * 96.60555 * 222.72026 * 2 1 3 14 14 C 1.53001 * 109.47271 * 185.00310 * 10 9 8 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 10 9 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 10 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 10 18 18 N 1.31511 * 119.99695 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47419 * 90.00057 * 19 17 15 21 21 H 1.48509 * 109.46723 * 209.99874 * 19 17 15 22 22 H 1.48503 * 109.47194 * 329.99380 * 19 17 15 23 23 H 1.08996 * 109.47061 * 269.98113 * 1 2 3 24 24 H 1.09002 * 109.46658 * 29.98059 * 1 2 3 25 25 H 1.08998 * 109.47100 * 149.97789 * 1 2 3 26 26 H 1.07993 * 125.20721 * 0.05161 * 3 2 1 27 27 H 1.08001 * 125.19518 * 180.17677 * 5 4 3 28 28 H 1.09002 * 109.47060 * 19.70854 * 7 6 5 29 29 H 1.09001 * 109.47380 * 139.70942 * 7 6 5 30 30 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 31 31 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 32 32 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 33 33 H 1.09005 * 109.46867 * 294.99797 * 14 10 9 34 34 H 1.08998 * 109.47402 * 54.99404 * 14 10 9 35 35 H 0.97007 * 119.99642 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2244 1.1245 0.0000 4 16 3.9387 0.7304 -0.0007 5 6 3.5736 -0.9901 0.0043 6 6 2.2516 -1.1670 -0.0005 7 6 1.6165 -2.5336 0.0000 8 7 1.1911 -2.8763 -1.3636 9 6 0.5666 -4.2055 -1.4018 10 6 0.1383 -4.5267 -2.8351 11 1 -0.5079 -3.7320 -3.2080 12 6 1.3307 -4.6319 -3.6917 13 7 2.2500 -4.7137 -4.3528 14 6 -0.6225 -5.8540 -2.8547 15 6 -1.1501 -6.1101 -4.2429 16 1 -0.9621 -5.3973 -5.0322 17 6 -1.8731 -7.2545 -4.5054 18 7 -2.3339 -7.4777 -5.7167 19 14 -2.1990 -8.4870 -3.1401 20 1 -3.4691 -8.1405 -2.4532 21 1 -2.3054 -9.8504 -3.7192 22 1 -1.0815 -8.4502 -2.1628 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8154 2.1239 0.0008 27 1 4.3078 -1.7823 0.0084 28 1 2.3395 -3.2701 0.3510 29 1 0.7500 -2.5314 0.6612 30 1 0.5699 -2.1738 -1.7360 31 1 1.2826 -4.9532 -1.0608 32 1 -0.3071 -4.2153 -0.7502 33 1 0.0496 -6.6623 -2.5666 34 1 -1.4550 -5.8061 -2.1527 35 1 -2.8428 -8.2827 -5.9013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390479494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:48 Heat of formation + Delta-G solvation = 25.622574 kcal Electronic energy + Delta-G solvation = -16760.624560 eV Core-core repulsion = 14076.981876 eV Total energy + Delta-G solvation = -2683.642684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95031 -38.55080 -36.33030 -35.24115 -33.53262 -31.93504 -29.69988 -28.09490 -25.98076 -23.74607 -23.31604 -22.89638 -19.14784 -18.83692 -18.45699 -18.36946 -16.53100 -16.49190 -15.73625 -15.52497 -15.15682 -15.01470 -14.44519 -14.39606 -14.14468 -13.87302 -13.84164 -13.39185 -13.19563 -13.10422 -12.99269 -12.77838 -12.48741 -12.34926 -12.24267 -12.05963 -11.71444 -11.64377 -11.45798 -11.24982 -10.71247 -9.62493 -9.31365 -9.10724 -8.22994 -6.28625 0.13819 0.81654 1.12727 1.43938 1.47566 1.57620 1.71914 2.08382 2.15436 2.42880 3.13390 3.29594 3.44570 4.00631 4.07055 4.12818 4.36029 4.41034 4.51041 4.61798 4.67976 4.72217 4.80633 4.84483 4.88412 4.96480 5.14593 5.26146 5.30081 5.48074 5.62890 5.63924 5.65727 6.06764 6.28286 6.51284 6.79308 6.93096 7.35877 8.94073 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034662 B = 0.003676 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.606231 B = 7614.626092 C = 7862.940308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.105 4.105 3 C -0.224 4.224 4 S 0.081 5.919 5 C -0.207 4.207 6 C -0.105 4.105 7 C 0.122 3.878 8 N -0.702 5.702 9 C 0.075 3.925 10 C 0.024 3.976 11 H 0.116 0.884 12 C 0.263 3.737 13 N -0.519 5.519 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.027 0.973 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.950 3.050 20 H -0.256 1.256 21 H -0.297 1.297 22 H -0.237 1.237 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.180 0.820 27 H 0.167 0.833 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.347 0.653 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 15.921 20.001 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.359 4.359 4 S 0.346 5.654 5 C -0.344 4.344 6 C -0.118 4.118 7 C -0.008 4.008 8 N -0.335 5.335 9 C -0.054 4.054 10 C 0.002 3.998 11 H 0.133 0.867 12 C -0.053 4.053 13 N -0.196 5.196 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.773 3.227 20 H -0.180 1.180 21 H -0.224 1.224 22 H -0.160 1.160 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.197 0.803 27 H 0.185 0.815 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.684 16.347 18.724 26.329 hybrid contribution -2.435 -1.302 0.094 2.762 sum 6.249 15.045 18.818 24.890 Atomic orbital electron populations 1.20605 0.88362 1.03388 1.03139 1.19085 0.98522 0.91428 1.02690 1.25659 0.95390 1.03125 1.11726 1.84202 1.07254 1.00531 1.73405 1.25662 0.99635 0.99374 1.09702 1.18897 0.92801 0.96193 1.03880 1.20546 0.99236 0.91716 0.89315 1.60452 1.46987 1.04003 1.22029 1.21979 0.99474 0.91123 0.92864 1.19088 0.87265 1.01366 0.92063 0.86669 1.29454 0.93458 0.90281 0.92156 1.80962 1.14901 1.11726 1.12058 1.19587 0.96295 0.92303 0.95976 1.21422 1.33463 1.06146 0.95915 0.95423 1.26067 0.95020 1.00307 0.98115 1.70099 1.38341 1.28124 1.23050 0.85667 0.80563 0.77028 0.79467 1.17999 1.22393 1.15954 0.90081 0.90564 0.91344 0.80255 0.81545 0.90182 0.92066 0.83318 0.90271 0.89968 0.95495 0.91659 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 9.60 71.24 0.68 -0.57 16 2 C -0.10 -1.85 5.80 -20.92 -0.12 -1.98 16 3 C -0.22 -3.79 10.98 66.72 0.73 -3.06 16 4 S 0.08 1.46 23.34 -56.49 -1.32 0.15 16 5 C -0.21 -4.18 10.95 66.72 0.73 -3.45 16 6 C -0.10 -2.06 5.31 -20.92 -0.11 -2.17 16 7 C 0.12 2.22 5.21 85.56 0.45 2.67 16 8 N -0.70 -15.49 6.19 -517.92 -3.21 -18.69 16 9 C 0.08 1.73 5.05 86.30 0.44 2.17 16 10 C 0.02 0.78 2.35 -12.60 -0.03 0.75 16 11 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 12 C 0.26 10.79 13.67 89.45 1.22 12.01 16 13 N -0.52 -24.12 18.53 20.00 0.37 -23.75 16 14 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 15 C -0.53 -28.51 9.15 25.60 0.23 -28.28 16 16 H 0.03 1.69 7.84 -2.91 -0.02 1.66 16 17 C 0.00 0.08 5.47 84.66 0.46 0.54 16 18 N -0.96 -59.11 13.96 21.45 0.30 -58.81 16 19 Si 0.95 41.04 27.47 68.60 1.88 42.92 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.24 -9.11 6.54 99.48 0.65 -8.45 16 23 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 25 H 0.07 0.89 6.01 -2.39 -0.01 0.88 16 26 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 28 H 0.08 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.06 0.90 7.70 -2.39 -0.02 0.88 16 30 H 0.35 7.13 7.33 -89.69 -0.66 6.47 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.03 1.07 7.20 -2.38 -0.02 1.05 16 34 H 0.07 2.22 7.57 -2.39 -0.02 2.20 16 35 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -70.43 314.10 3.20 -67.23 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.38 Total: 12.32 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.79 Total: -21.36 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -2.54 Total: -101.26 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.92 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.15 kcal Total: -70.43 3.20 -67.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390479494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.852 kcal (2) G-P(sol) polarization free energy of solvation -70.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds