Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 122.54063 * 2 1 4 4 S 1.75887 * 109.59638 * 180.02562 * 3 2 1 5 5 C 1.75891 * 90.96813 * 0.02562 * 4 3 2 6 6 C 1.33390 * 109.59251 * 359.97438 * 5 4 3 7 7 C 1.50704 * 122.53568 * 180.27016 * 6 5 4 8 8 N 1.46906 * 109.46769 * 259.71172 * 7 6 5 9 9 C 1.46907 * 110.99625 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46867 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47470 * 54.99777 * 10 9 8 12 12 C 1.47201 * 109.47140 * 294.99823 * 10 9 8 13 13 N 5.61016 * 54.59390 * 231.09250 * 2 1 3 14 14 C 1.53001 * 109.46785 * 175.00319 * 10 9 8 15 15 C 1.50700 * 109.46856 * 184.99849 * 14 10 9 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 14 10 17 17 C 1.37878 * 120.00165 * 179.97438 * 15 14 10 18 18 N 1.31522 * 119.99879 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00293 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46974 * 90.00502 * 19 17 15 21 21 H 1.48498 * 109.47281 * 210.00644 * 19 17 15 22 22 H 1.48500 * 109.47210 * 330.00491 * 19 17 15 23 23 H 1.09003 * 109.46685 * 269.97045 * 1 2 3 24 24 H 1.08999 * 109.47155 * 29.97291 * 1 2 3 25 25 H 1.09003 * 109.46956 * 149.97386 * 1 2 3 26 26 H 1.08000 * 125.20529 * 0.06732 * 3 2 1 27 27 H 1.08003 * 125.20506 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47377 * 19.71170 * 7 6 5 29 29 H 1.09001 * 109.46666 * 139.71854 * 7 6 5 30 30 H 1.00902 * 110.99894 * 303.95306 * 8 7 6 31 31 H 1.08994 * 109.47152 * 300.00026 * 9 8 7 32 32 H 1.09005 * 109.46946 * 59.99886 * 9 8 7 33 33 H 1.09002 * 109.46784 * 304.99485 * 14 10 9 34 34 H 1.08996 * 109.47468 * 64.99681 * 14 10 9 35 35 H 0.96990 * 120.00203 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.1244 0.0000 4 16 3.9387 0.7304 -0.0007 5 6 3.5737 -0.9902 -0.0018 6 6 2.2516 -1.1670 -0.0010 7 6 1.6166 -2.5337 0.0044 8 7 1.1858 -2.8788 -1.3570 9 6 0.5602 -4.2076 -1.3902 10 6 0.1263 -4.5313 -2.8212 11 1 0.9814 -4.4367 -3.4904 12 6 -0.9290 -3.5935 -3.2381 13 7 -1.7433 -2.8719 -3.5583 14 6 -0.4113 -5.9626 -2.8797 15 6 -0.7238 -6.3237 -4.3090 16 1 -0.5555 -5.6045 -5.0969 17 6 -1.2238 -7.5727 -4.6109 18 7 -1.4283 -8.4487 -3.6515 19 14 -1.6119 -8.0202 -6.3825 20 1 -0.4106 -8.6213 -7.0157 21 1 -2.7291 -8.9980 -6.4127 22 1 -2.0045 -6.7970 -7.1274 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5143 26 1 1.8155 2.1240 0.0010 27 1 4.3078 -1.7824 -0.0021 28 1 2.3408 -3.2695 0.3538 29 1 0.7526 -2.5302 0.6689 30 1 0.5632 -2.1769 -1.7281 31 1 1.2768 -4.9552 -1.0503 32 1 -0.3112 -4.2153 -0.7353 33 1 0.3392 -6.6488 -2.4873 34 1 -1.3185 -6.0347 -2.2799 35 1 -1.7803 -9.3272 -3.8638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390479495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = 24.378578 kcal Electronic energy + Delta-G solvation = -16759.748863 eV Core-core repulsion = 14076.052235 eV Total energy + Delta-G solvation = -2683.696628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99259 -38.62974 -36.34565 -35.34126 -33.38439 -31.93559 -29.48950 -27.96457 -26.03006 -23.93826 -23.57195 -22.93128 -19.04564 -18.51330 -18.48244 -18.16203 -16.96166 -16.63244 -15.84410 -15.52484 -15.03947 -14.87171 -14.53601 -14.25427 -14.14940 -13.95697 -13.83911 -13.47502 -13.20132 -13.08829 -12.87987 -12.83572 -12.52673 -12.49493 -12.31543 -12.29753 -11.96660 -11.66283 -11.39090 -11.14028 -10.54002 -9.64705 -9.39659 -9.12552 -8.18983 -6.26972 0.13054 0.82009 1.10783 1.40724 1.42447 1.51567 1.68183 1.95283 1.97898 2.42104 3.16194 3.26279 3.35671 3.98838 4.02715 4.11743 4.35185 4.40880 4.45373 4.53463 4.66607 4.72412 4.73609 4.81172 4.96197 5.00496 5.02895 5.25720 5.48311 5.56097 5.61552 5.63867 5.80156 5.99606 6.22030 6.30777 6.75331 6.87923 7.41542 8.91883 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.003493 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.771865 B = 8013.233981 C = 8203.898020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.110 4.110 3 C -0.226 4.226 4 S 0.099 5.901 5 C -0.196 4.196 6 C -0.111 4.111 7 C 0.118 3.882 8 N -0.687 5.687 9 C 0.077 3.923 10 C 0.018 3.982 11 H 0.121 0.879 12 C 0.250 3.750 13 N -0.503 5.503 14 C 0.039 3.961 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.277 1.277 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.178 0.822 27 H 0.180 0.820 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.333 0.667 31 H 0.110 0.890 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.002 0.998 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 15.559 11.021 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.361 4.361 4 S 0.365 5.635 5 C -0.332 4.332 6 C -0.124 4.124 7 C -0.012 4.012 8 N -0.319 5.319 9 C -0.053 4.053 10 C -0.004 4.004 11 H 0.139 0.861 12 C -0.066 4.066 13 N -0.181 5.181 14 C 0.000 4.000 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.202 1.202 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.195 0.805 27 H 0.197 0.803 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.128 0.872 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.543 17.123 10.387 23.115 hybrid contribution -2.332 -1.406 -0.544 2.777 sum 9.211 15.716 9.844 20.706 Atomic orbital electron populations 1.20546 0.89612 1.02494 1.02789 1.19015 0.97798 0.92117 1.03364 1.25625 0.96107 1.02790 1.11543 1.84119 1.06054 1.00346 1.73010 1.25721 0.99217 0.99659 1.08581 1.18820 0.93171 0.95659 1.04744 1.20612 0.99036 0.92517 0.89081 1.60651 1.45555 1.03598 1.22069 1.21969 0.98390 0.91799 0.93114 1.19244 0.91900 0.91194 0.98067 0.86107 1.29610 0.93589 0.91918 0.91491 1.80949 1.12159 1.14178 1.10780 1.18986 0.96174 0.88987 0.95861 1.21560 1.43012 0.98899 0.94308 0.92915 1.25698 0.95490 0.96679 1.00834 1.70026 1.46051 1.06637 1.33562 0.85701 0.78226 0.77857 0.80826 1.19186 1.20979 1.20160 0.90156 0.90759 0.93064 0.80492 0.80306 0.88569 0.93796 0.84889 0.87217 0.94589 0.94378 0.97989 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.60 71.24 0.68 -1.13 16 2 C -0.11 -2.28 5.80 -20.92 -0.12 -2.40 16 3 C -0.23 -4.14 10.98 66.72 0.73 -3.41 16 4 S 0.10 1.72 23.34 -56.49 -1.32 0.40 16 5 C -0.20 -3.72 10.95 66.72 0.73 -2.99 16 6 C -0.11 -2.35 5.31 -20.92 -0.11 -2.46 16 7 C 0.12 2.47 5.21 85.56 0.45 2.92 16 8 N -0.69 -17.35 6.49 -517.90 -3.36 -20.71 16 9 C 0.08 2.13 5.12 86.30 0.44 2.57 16 10 C 0.02 0.63 2.42 -12.60 -0.03 0.60 16 11 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 12 C 0.25 9.96 12.97 89.46 1.16 11.13 16 13 N -0.50 -21.68 18.53 19.98 0.37 -21.31 16 14 C 0.04 1.77 4.42 29.85 0.13 1.90 16 15 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16 16 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 17 C 0.01 0.65 5.46 84.65 0.46 1.12 16 18 N -0.92 -52.78 13.29 21.45 0.28 -52.49 16 19 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 25 H 0.05 1.12 6.00 -2.39 -0.01 1.10 16 26 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 29 H 0.04 0.90 7.71 -2.39 -0.02 0.88 16 30 H 0.33 9.13 6.38 -89.69 -0.57 8.56 16 31 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.26 14.34 8.31 -92.72 -0.77 13.57 16 Total: -1.00 -61.53 316.49 3.27 -58.26 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.52 Total: 10.89 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.75 Total: -20.51 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.70 Total: -94.52 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -61.53 3.27 -58.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390479495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.637 kcal (2) G-P(sol) polarization free energy of solvation -61.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds