Wall clock time and date at job start Mon Mar 30 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38266 * 119.97790 * 2 1 4 4 C 1.38177 * 120.02441 * 179.97438 * 3 2 1 5 5 C 1.38486 * 119.97741 * 359.78240 * 4 3 2 6 6 F 1.35098 * 120.02782 * 180.25552 * 5 4 3 7 7 C 1.38437 * 119.94318 * 0.44827 * 5 4 3 8 8 C 1.50700 * 120.00969 * 179.80892 * 7 5 4 9 9 H 1.09004 * 109.48169 * 324.74955 * 8 7 5 10 10 C 1.53098 * 109.47910 * 84.77908 * 8 7 5 11 11 C 1.53178 * 109.16176 * 177.59195 * 10 8 7 12 12 C 1.53199 * 109.04105 * 303.01989 * 11 10 8 13 13 C 1.53088 * 109.15262 * 56.97759 * 12 11 10 14 14 H 1.08997 * 109.47992 * 182.41002 * 13 12 11 15 15 C 1.50694 * 109.48084 * 62.38226 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.42896 * 109.48049 * 204.72174 * 8 7 5 24 24 C 1.38219 * 119.97670 * 359.52955 * 7 5 4 25 25 H 1.08992 * 109.47398 * 270.02978 * 1 2 3 26 26 H 1.09002 * 109.46400 * 30.02809 * 1 2 3 27 27 H 1.08999 * 109.46775 * 150.02057 * 1 2 3 28 28 H 1.07997 * 119.98770 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00974 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.52468 * 297.49920 * 10 8 7 31 31 H 1.09005 * 109.52074 * 57.62164 * 10 8 7 32 32 H 1.08997 * 109.54356 * 62.88632 * 11 10 8 33 33 H 1.09007 * 109.53893 * 183.15641 * 11 10 8 34 34 H 1.08999 * 109.51913 * 297.07441 * 12 11 10 35 35 H 1.09006 * 109.53729 * 176.88497 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.98862 * 180.23132 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5797 1.1988 0.0005 5 6 4.2726 -0.0002 0.0056 6 9 5.6236 -0.0003 0.0114 7 6 3.5797 -1.1987 0.0008 8 6 4.3323 -2.5044 0.0020 9 1 5.2434 -2.3993 -0.5871 10 6 4.6949 -2.8834 1.4403 11 6 5.4061 -4.2400 1.4387 12 6 4.4977 -5.2798 0.7749 13 6 4.1428 -4.8081 -0.6375 14 1 3.4620 -5.5232 -1.0993 15 6 5.3991 -4.7047 -1.4633 16 1 6.3551 -4.9511 -1.0254 17 6 5.3282 -4.2956 -2.7782 18 7 4.1640 -3.9961 -3.3117 19 14 6.8855 -4.1669 -3.8016 20 1 6.5410 -3.7094 -5.1718 21 1 7.8123 -3.1922 -3.1721 22 1 7.5412 -5.4973 -3.8747 23 8 3.5125 -3.5274 -0.5665 24 6 2.1975 -1.1974 0.0007 25 1 -0.3634 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6573 2.1326 -0.0004 29 1 4.1191 2.1345 0.0010 30 1 5.3562 -2.1259 1.8609 31 1 3.7869 -2.9477 2.0399 32 1 6.3392 -4.1619 0.8808 33 1 5.6172 -4.5421 2.4646 34 1 3.5857 -5.3937 1.3609 35 1 5.0180 -6.2361 0.7197 36 1 4.1142 -3.7079 -4.2366 37 1 1.6568 -2.1323 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393840525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:36 Heat of formation + Delta-G solvation = -85.522405 kcal Electronic energy + Delta-G solvation = -20664.458956 eV Core-core repulsion = 17513.323831 eV Total energy + Delta-G solvation = -3151.135125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.41283 -39.16646 -37.79215 -33.05127 -32.44330 -32.10009 -31.35521 -28.85373 -26.39905 -25.60172 -23.79045 -22.21456 -21.89316 -20.13801 -18.96103 -17.14707 -16.55859 -15.87145 -15.33597 -15.16094 -14.65145 -14.22601 -13.95317 -13.65416 -13.54067 -13.45980 -13.32188 -12.99124 -12.66130 -12.05894 -11.82733 -11.78789 -11.50083 -11.24358 -11.15813 -10.88981 -10.64637 -10.62891 -10.33023 -10.17851 -9.73805 -9.64150 -8.79085 -8.50874 -8.44557 -8.11580 -7.72584 -5.98874 -4.13917 1.52037 1.64155 3.31067 3.36242 3.38599 3.93898 4.41427 4.66970 4.91081 5.02645 5.14446 5.28359 5.44257 5.50260 5.68183 5.74172 5.75153 5.80391 5.90015 6.01033 6.09324 6.22020 6.30517 6.37574 6.44401 6.49641 6.51409 6.68262 6.79665 6.84447 6.93975 6.98730 7.03703 7.16860 7.32633 7.67862 7.87534 8.20995 8.80222 9.04868 9.58413 11.05334 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.007539 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.263230 B = 3712.898800 C = 3974.325117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.107 4.107 4 C -0.158 4.158 5 C 0.092 3.908 6 F -0.140 7.140 7 C -0.085 4.085 8 C 0.143 3.857 9 H 0.077 0.923 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.142 4.142 13 C 0.213 3.787 14 H 0.063 0.937 15 C -0.560 4.560 16 H 0.057 0.943 17 C 0.080 3.920 18 N -0.857 5.857 19 Si 0.881 3.119 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.276 1.276 23 O -0.366 6.366 24 C -0.063 4.063 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 7.776 7.765 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.177 4.177 5 C 0.072 3.928 6 F -0.119 7.119 7 C -0.086 4.086 8 C 0.085 3.915 9 H 0.095 0.905 10 C -0.173 4.173 11 C -0.145 4.145 12 C -0.180 4.180 13 C 0.158 3.842 14 H 0.080 0.920 15 C -0.598 4.598 16 H 0.075 0.925 17 C -0.126 4.126 18 N -0.493 5.493 19 Si 0.708 3.292 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.201 1.201 23 O -0.285 6.285 24 C -0.081 4.081 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.574 7.857 7.533 11.807 hybrid contribution 1.506 0.102 -0.643 1.641 sum -3.068 7.959 6.890 10.965 Atomic orbital electron populations 1.20729 0.91146 1.02753 1.01937 1.19967 0.96258 0.93060 1.01327 1.20720 0.92941 0.97627 1.01181 1.20949 0.94969 0.96470 1.05263 1.17528 0.76812 0.94018 1.04399 1.91466 1.29094 1.97381 1.93955 1.20088 0.94730 0.94026 0.99792 1.20228 0.94004 0.84901 0.92416 0.90543 1.22079 0.99874 0.97661 0.97661 1.21443 0.99745 0.94663 0.98692 1.22190 0.97917 0.98171 0.99711 1.19722 0.93675 0.81792 0.89054 0.91952 1.21494 0.93694 1.48248 0.96349 0.92501 1.25018 0.95592 0.94325 0.97650 1.70035 1.23357 1.42406 1.13525 0.86844 0.84125 0.78605 0.79595 1.21192 1.20093 1.20102 1.87877 1.40160 1.18803 1.81647 1.20873 0.92783 0.98061 0.96384 0.91505 0.91885 0.91262 0.85812 0.85360 0.92738 0.92559 0.91209 0.93895 0.94008 0.92462 0.92973 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.11 -1.59 5.88 -104.62 -0.62 -2.21 16 3 C -0.11 -1.49 9.70 -39.59 -0.38 -1.87 16 4 C -0.16 -2.43 10.03 -39.51 -0.40 -2.82 16 5 C 0.09 1.72 7.24 -39.42 -0.29 1.43 16 6 F -0.14 -2.75 16.57 2.25 0.04 -2.71 16 7 C -0.09 -1.72 5.07 -104.56 -0.53 -2.25 16 8 C 0.14 3.22 2.36 -27.83 -0.07 3.15 16 9 H 0.08 1.97 6.75 -51.93 -0.35 1.62 16 10 C -0.13 -2.62 5.40 -26.59 -0.14 -2.77 16 11 C -0.11 -2.10 5.78 -26.54 -0.15 -2.25 16 12 C -0.14 -2.96 5.60 -26.58 -0.15 -3.10 16 13 C 0.21 5.34 3.16 -27.84 -0.09 5.25 16 14 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 15 C -0.56 -15.11 6.59 -34.44 -0.23 -15.34 16 16 H 0.06 1.51 6.87 -52.49 -0.36 1.15 16 17 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 18 N -0.86 -24.93 12.84 55.43 0.71 -24.22 16 19 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 O -0.37 -9.14 8.47 -35.23 -0.30 -9.44 16 24 C -0.06 -1.15 9.00 -39.59 -0.36 -1.51 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.45 6.85 -51.93 -0.36 1.09 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.14 2.60 7.35 -52.49 -0.39 2.21 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -29.27 305.37 -8.33 -37.60 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.23 Total: 0.81 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -3.13 Total: -23.05 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.71 Total: -24.22 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.30 Total: -9.44 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.27 -8.33 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393840525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.923 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds