Wall clock time and date at job start Mon Mar 30 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38266 * 119.97790 * 2 1 4 4 C 1.38177 * 120.02441 * 179.97438 * 3 2 1 5 5 C 1.38486 * 119.97741 * 359.78240 * 4 3 2 6 6 F 1.35098 * 120.02782 * 180.25552 * 5 4 3 7 7 C 1.38437 * 119.94318 * 0.44827 * 5 4 3 8 8 C 1.50700 * 120.00969 * 179.80892 * 7 5 4 9 9 H 1.09004 * 109.48169 * 324.74955 * 8 7 5 10 10 C 1.53098 * 109.47910 * 84.77908 * 8 7 5 11 11 C 1.53178 * 109.16176 * 177.59195 * 10 8 7 12 12 C 1.53199 * 109.04105 * 303.01989 * 11 10 8 13 13 C 1.53088 * 109.15262 * 56.97759 * 12 11 10 14 14 H 1.08997 * 109.47992 * 182.41002 * 13 12 11 15 15 C 1.50694 * 109.48084 * 62.38226 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.42896 * 109.48049 * 204.72174 * 8 7 5 24 24 C 1.38219 * 119.97670 * 359.52955 * 7 5 4 25 25 H 1.08992 * 109.47398 * 270.02978 * 1 2 3 26 26 H 1.09002 * 109.46400 * 30.02809 * 1 2 3 27 27 H 1.08999 * 109.46775 * 150.02057 * 1 2 3 28 28 H 1.07997 * 119.98770 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00974 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.52468 * 297.49920 * 10 8 7 31 31 H 1.09005 * 109.52074 * 57.62164 * 10 8 7 32 32 H 1.08997 * 109.54356 * 62.88632 * 11 10 8 33 33 H 1.09007 * 109.53893 * 183.15641 * 11 10 8 34 34 H 1.08999 * 109.51913 * 297.07441 * 12 11 10 35 35 H 1.09006 * 109.53729 * 176.88497 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.98862 * 180.23132 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5797 1.1988 0.0005 5 6 4.2726 -0.0002 0.0056 6 9 5.6236 -0.0003 0.0114 7 6 3.5797 -1.1987 0.0008 8 6 4.3323 -2.5044 0.0020 9 1 5.2434 -2.3993 -0.5871 10 6 4.6949 -2.8834 1.4403 11 6 5.4061 -4.2400 1.4387 12 6 4.4977 -5.2798 0.7749 13 6 4.1428 -4.8081 -0.6375 14 1 3.4620 -5.5232 -1.0993 15 6 5.3991 -4.7047 -1.4633 16 1 6.3551 -4.9511 -1.0254 17 6 5.3282 -4.2956 -2.7782 18 7 4.1640 -3.9961 -3.3117 19 14 6.8855 -4.1669 -3.8016 20 1 6.5410 -3.7094 -5.1718 21 1 7.8123 -3.1922 -3.1721 22 1 7.5412 -5.4973 -3.8747 23 8 3.5125 -3.5274 -0.5665 24 6 2.1975 -1.1974 0.0007 25 1 -0.3634 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6573 2.1326 -0.0004 29 1 4.1191 2.1345 0.0010 30 1 5.3562 -2.1259 1.8609 31 1 3.7869 -2.9477 2.0399 32 1 6.3392 -4.1619 0.8808 33 1 5.6172 -4.5421 2.4646 34 1 3.5857 -5.3937 1.3609 35 1 5.0180 -6.2361 0.7197 36 1 4.1142 -3.7079 -4.2366 37 1 1.6568 -2.1323 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393840525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:36 Heat of formation + Delta-G solvation = -100.788726 kcal Electronic energy + Delta-G solvation = -20665.120953 eV Core-core repulsion = 17513.323831 eV Total energy + Delta-G solvation = -3151.797122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.85825 -40.65087 -39.38121 -34.87286 -34.16014 -33.68524 -32.77369 -30.46875 -27.80517 -27.28556 -25.40578 -23.99843 -23.23769 -21.54734 -20.77709 -18.52452 -18.43328 -17.43655 -16.94484 -16.65111 -16.55050 -15.80747 -15.61846 -15.28276 -15.02471 -14.87130 -14.57202 -14.34555 -14.23659 -13.71089 -13.50330 -13.08628 -12.84243 -12.83358 -12.73041 -12.59210 -12.42695 -12.22141 -11.97262 -11.84145 -11.56497 -11.30594 -10.75867 -10.50973 -9.98011 -9.61922 -9.29268 -8.12478 -6.32452 0.21573 0.35122 1.34405 1.36036 1.42585 2.36642 2.64975 3.05278 3.33992 3.45229 3.80068 3.96306 4.03533 4.15552 4.19639 4.30557 4.37814 4.50510 4.56373 4.66888 4.78610 4.89901 4.90965 4.95794 5.00598 5.08484 5.19073 5.20739 5.27071 5.33014 5.34217 5.42224 5.49635 5.64720 5.66788 5.78798 6.04335 6.13986 6.73067 7.08282 7.43773 8.91456 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.007539 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.263230 B = 3712.898800 C = 3974.325117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.094 4.094 4 C -0.148 4.148 5 C 0.062 3.938 6 F -0.154 7.154 7 C -0.116 4.116 8 C 0.146 3.854 9 H 0.031 0.969 10 C -0.128 4.128 11 C -0.105 4.105 12 C -0.134 4.134 13 C 0.205 3.795 14 H 0.032 0.968 15 C -0.564 4.564 16 H 0.056 0.944 17 C 0.030 3.970 18 N -0.892 5.892 19 Si 0.939 3.061 20 H -0.284 1.284 21 H -0.276 1.276 22 H -0.263 1.263 23 O -0.383 6.383 24 C -0.084 4.084 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.258 0.742 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 9.721 8.968 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.112 4.112 4 C -0.166 4.166 5 C 0.043 3.957 6 F -0.133 7.133 7 C -0.117 4.117 8 C 0.087 3.913 9 H 0.049 0.951 10 C -0.165 4.165 11 C -0.142 4.142 12 C -0.172 4.172 13 C 0.149 3.851 14 H 0.050 0.950 15 C -0.602 4.602 16 H 0.074 0.926 17 C -0.172 4.172 18 N -0.530 5.530 19 Si 0.764 3.236 20 H -0.209 1.209 21 H -0.202 1.202 22 H -0.188 1.188 23 O -0.302 6.302 24 C -0.102 4.102 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.188 0.812 29 H 0.177 0.823 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.157 9.790 8.746 14.105 hybrid contribution 1.610 -0.447 -0.992 1.943 sum -3.547 9.344 7.755 12.650 Atomic orbital electron populations 1.20815 0.88391 1.03678 1.03523 1.20381 0.98231 0.92199 0.99089 1.21249 0.92421 0.98925 0.98555 1.21356 0.95820 0.96197 1.03262 1.17850 0.76483 0.94921 1.06430 1.91421 1.30080 1.97478 1.94301 1.20049 0.95673 0.93428 1.02574 1.20167 0.92303 0.85629 0.93185 0.95095 1.22014 1.00626 0.97994 0.95904 1.21434 0.98333 0.94198 1.00261 1.22066 0.99107 0.98770 0.97264 1.19661 0.92180 0.81812 0.91405 0.95042 1.21785 0.94345 1.47282 0.96748 0.92619 1.25743 0.98264 0.94272 0.98938 1.70165 1.25246 1.43923 1.13624 0.85922 0.80719 0.78930 0.78025 1.20918 1.20193 1.18807 1.87811 1.40721 1.19226 1.82471 1.20856 0.92139 0.99043 0.98189 0.89448 0.89277 0.92059 0.81190 0.82317 0.91557 0.91278 0.93127 0.90241 0.92364 0.91719 0.93267 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.42 16 2 C -0.10 -2.74 5.88 -19.86 -0.12 -2.86 16 3 C -0.09 -2.25 9.70 22.26 0.22 -2.03 16 4 C -0.15 -4.16 10.03 22.31 0.22 -3.94 16 5 C 0.06 2.33 7.24 22.38 0.16 2.49 16 6 F -0.15 -6.16 16.57 44.97 0.75 -5.41 16 7 C -0.12 -4.80 5.07 -19.82 -0.10 -4.90 16 8 C 0.15 6.80 2.36 29.88 0.07 6.87 16 9 H 0.03 1.70 6.75 -2.39 -0.02 1.69 16 10 C -0.13 -4.97 5.40 30.69 0.17 -4.80 16 11 C -0.10 -4.01 5.78 30.72 0.18 -3.83 16 12 C -0.13 -5.59 5.60 30.69 0.17 -5.42 16 13 C 0.21 10.70 3.16 29.88 0.09 10.80 16 14 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 15 C -0.56 -31.50 6.59 25.60 0.17 -31.33 16 16 H 0.06 3.05 6.87 -2.91 -0.02 3.03 16 17 C 0.03 1.74 5.40 84.66 0.46 2.20 16 18 N -0.89 -54.00 12.84 21.45 0.28 -53.72 16 19 Si 0.94 45.10 29.54 68.60 2.03 47.12 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 23 O -0.38 -20.04 8.47 -148.98 -1.26 -21.31 16 24 C -0.08 -3.09 9.00 22.26 0.20 -2.89 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 27 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 28 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.05 2.11 6.85 -2.39 -0.02 2.10 16 33 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.12 4.76 7.35 -2.91 -0.02 4.74 16 Total: -1.00 -66.80 305.37 5.44 -61.36 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.05 Total: 13.04 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 2.60 Total: -41.07 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.72 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.26 Total: -21.31 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.75 Total: -5.41 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.80 5.44 -61.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393840525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds