Wall clock time and date at job start Mon Mar 30 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.97440 * 2 1 4 4 C 1.38175 * 120.02667 * 180.02562 * 3 2 1 5 5 C 1.38489 * 119.97139 * 359.70429 * 4 3 2 6 6 F 1.35102 * 120.02347 * 180.29654 * 5 4 3 7 7 C 1.38437 * 119.94725 * 0.57188 * 5 4 3 8 8 C 1.50698 * 120.01182 * 179.72859 * 7 5 4 9 9 H 1.08993 * 109.48093 * 34.74334 * 8 7 5 10 10 C 1.53094 * 109.47659 * 274.72088 * 8 7 5 11 11 C 1.53180 * 109.16130 * 182.39757 * 10 8 7 12 12 C 1.53169 * 109.03602 * 56.98243 * 11 10 8 13 13 C 1.53098 * 109.16498 * 303.01952 * 12 11 10 14 14 H 1.09008 * 109.47855 * 297.61605 * 13 12 11 15 15 C 1.50697 * 109.47985 * 177.59371 * 13 12 11 16 16 H 1.07991 * 120.00449 * 359.74558 * 15 13 12 17 17 C 1.37885 * 119.99686 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 13 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 O 1.42895 * 109.49171 * 154.76559 * 8 7 5 24 24 C 1.38219 * 119.97392 * 359.45178 * 7 5 4 25 25 H 1.09005 * 109.47253 * 269.97602 * 1 2 3 26 26 H 1.09002 * 109.47378 * 29.97602 * 1 2 3 27 27 H 1.09000 * 109.47271 * 149.97452 * 1 2 3 28 28 H 1.08000 * 119.98881 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.01787 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.52605 * 62.49487 * 10 8 7 31 31 H 1.08998 * 109.52858 * 302.30176 * 10 8 7 32 32 H 1.09001 * 109.54445 * 297.11480 * 11 10 8 33 33 H 1.09002 * 109.61617 * 176.89291 * 11 10 8 34 34 H 1.09007 * 109.52519 * 183.11349 * 12 11 10 35 35 H 1.09000 * 109.57884 * 62.95731 * 12 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 37 37 H 1.08000 * 119.98600 * 180.27702 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0005 5 6 4.2725 -0.0001 0.0051 6 9 5.6235 -0.0001 0.0107 7 6 3.5797 -1.1987 -0.0007 8 6 4.3323 -2.5043 -0.0007 9 1 5.2429 -2.3989 0.5889 10 6 4.6962 -2.8837 -1.4386 11 6 5.4077 -4.2402 -1.4359 12 6 4.4990 -5.2797 -0.7726 13 6 4.1427 -4.8077 0.6395 14 1 5.0510 -4.7327 1.2377 15 6 3.2012 -5.7965 1.2773 16 1 2.8847 -6.6716 0.7293 17 6 2.7392 -5.5809 2.5584 18 7 3.1246 -4.5152 3.2258 19 14 1.5660 -6.8026 3.3461 20 1 2.3440 -7.8413 4.0678 21 1 0.6812 -6.0920 4.3040 22 1 0.7400 -7.4455 2.2926 23 8 3.5124 -3.5273 0.5677 24 6 2.1975 -1.1974 -0.0006 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6572 2.1326 0.0004 29 1 4.1190 2.1345 -0.0010 30 1 5.3577 -2.1262 -1.8590 31 1 3.7887 -2.9496 -2.0387 32 1 6.3403 -4.1617 -0.8772 33 1 5.6211 -4.5435 -2.4609 34 1 5.0196 -6.2358 -0.7166 35 1 3.5874 -5.3951 -1.3589 36 1 2.7998 -4.3637 4.1272 37 1 1.6569 -2.1323 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393840529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:39 Heat of formation + Delta-G solvation = -86.977271 kcal Electronic energy + Delta-G solvation = -20346.998358 eV Core-core repulsion = 17195.800145 eV Total energy + Delta-G solvation = -3151.198213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.53448 -39.21849 -37.77413 -33.27811 -32.56258 -32.15329 -31.37437 -29.01652 -26.44701 -25.64707 -23.90237 -22.00554 -21.92415 -20.16038 -19.22677 -17.26068 -16.59559 -16.21301 -15.30566 -15.17451 -14.60048 -14.37452 -14.19790 -13.73567 -13.65535 -13.51006 -13.38121 -13.05550 -12.67339 -12.28568 -11.91295 -11.84468 -11.51278 -11.31521 -10.97203 -10.88731 -10.68970 -10.66751 -10.36458 -10.26030 -9.89344 -9.65271 -8.90749 -8.64462 -8.47323 -8.17161 -7.83364 -6.02173 -4.15040 1.45468 1.58713 3.29481 3.36580 3.39682 3.88346 4.40258 4.57066 4.78395 4.97856 5.10661 5.21717 5.41502 5.47222 5.56214 5.58262 5.66920 5.78482 5.82699 5.95049 6.01263 6.08718 6.13365 6.28570 6.35661 6.39623 6.41073 6.57759 6.66125 6.75842 6.83784 6.86549 6.91015 6.95114 7.25825 7.50743 7.88562 8.26803 8.75644 9.08894 9.55397 11.05022 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.007166 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.794979 B = 3906.188506 C = 4819.567989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.104 4.104 4 C -0.158 4.158 5 C 0.090 3.910 6 F -0.143 7.143 7 C -0.088 4.088 8 C 0.123 3.877 9 H 0.054 0.946 10 C -0.137 4.137 11 C -0.120 4.120 12 C -0.144 4.144 13 C 0.220 3.780 14 H 0.014 0.986 15 C -0.527 4.527 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.858 5.858 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 O -0.348 6.348 24 C -0.058 4.058 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 9.463 -7.436 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.177 4.177 5 C 0.071 3.929 6 F -0.121 7.121 7 C -0.089 4.089 8 C 0.064 3.936 9 H 0.072 0.928 10 C -0.175 4.175 11 C -0.157 4.157 12 C -0.182 4.182 13 C 0.164 3.836 14 H 0.032 0.968 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.493 5.493 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 O -0.268 6.268 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.165 9.589 -7.203 12.049 hybrid contribution -0.015 -0.538 0.457 0.706 sum -1.180 9.051 -6.746 11.350 Atomic orbital electron populations 1.20743 0.91036 1.02469 1.02406 1.19992 0.96388 0.92992 1.01038 1.20749 0.92955 0.97681 1.00843 1.20934 0.94956 0.96429 1.05346 1.17514 0.76657 0.94042 1.04706 1.91451 1.29214 1.97400 1.94057 1.19931 0.94799 0.93425 1.00756 1.20471 0.93274 0.86872 0.92954 0.92849 1.22114 1.00451 0.97322 0.97622 1.21612 0.98824 0.95411 0.99876 1.22262 0.98431 0.97455 1.00033 1.19724 0.94164 0.80662 0.89009 0.96800 1.20989 1.31080 1.05784 0.98525 0.91754 1.25080 0.95705 0.94922 0.97090 1.70046 1.42435 1.25709 1.11139 0.86633 0.81103 0.81185 0.79269 1.20542 1.21102 1.19722 1.88329 1.39624 1.18099 1.80702 1.20948 0.92753 0.98374 0.95474 0.91155 0.91933 0.91325 0.85714 0.85301 0.92545 0.91668 0.92574 0.92930 0.92374 0.92444 0.92947 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 2 C -0.10 -1.57 5.88 -104.62 -0.62 -2.18 16 3 C -0.10 -1.41 9.70 -39.60 -0.38 -1.80 16 4 C -0.16 -2.30 10.03 -39.51 -0.40 -2.70 16 5 C 0.09 1.58 7.24 -39.42 -0.29 1.30 16 6 F -0.14 -2.55 16.57 2.25 0.04 -2.51 16 7 C -0.09 -1.71 5.07 -104.56 -0.53 -2.24 16 8 C 0.12 2.64 2.64 -27.84 -0.07 2.57 16 9 H 0.05 1.22 7.78 -51.93 -0.40 0.81 16 10 C -0.14 -2.52 5.40 -26.59 -0.14 -2.67 16 11 C -0.12 -2.17 6.03 -26.55 -0.16 -2.33 16 12 C -0.14 -3.04 5.36 -26.59 -0.14 -3.19 16 13 C 0.22 5.65 2.50 -27.83 -0.07 5.58 16 14 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 15 C -0.53 -14.64 8.79 -34.44 -0.30 -14.94 16 16 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 17 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 18 N -0.86 -25.20 12.85 55.43 0.71 -24.49 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 O -0.35 -8.86 8.28 -35.23 -0.29 -9.15 16 24 C -0.06 -1.06 9.00 -39.59 -0.36 -1.42 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.14 2.85 7.35 -52.49 -0.39 2.46 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -29.89 310.21 -8.48 -38.38 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.40 Total: -0.18 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -3.20 Total: -22.88 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.71 Total: -24.49 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.29 Total: -9.15 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.89 -8.48 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393840529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.601 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds