Wall clock time and date at job start Mon Mar 30 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.97440 * 2 1 4 4 C 1.38175 * 120.02667 * 180.02562 * 3 2 1 5 5 C 1.38489 * 119.97139 * 359.70429 * 4 3 2 6 6 F 1.35102 * 120.02347 * 180.29654 * 5 4 3 7 7 C 1.38437 * 119.94725 * 0.57188 * 5 4 3 8 8 C 1.50698 * 120.01182 * 179.72859 * 7 5 4 9 9 H 1.08993 * 109.48093 * 34.74334 * 8 7 5 10 10 C 1.53094 * 109.47659 * 274.72088 * 8 7 5 11 11 C 1.53180 * 109.16130 * 182.39757 * 10 8 7 12 12 C 1.53169 * 109.03602 * 56.98243 * 11 10 8 13 13 C 1.53098 * 109.16498 * 303.01952 * 12 11 10 14 14 H 1.09008 * 109.47855 * 297.61605 * 13 12 11 15 15 C 1.50697 * 109.47985 * 177.59371 * 13 12 11 16 16 H 1.07991 * 120.00449 * 359.74558 * 15 13 12 17 17 C 1.37885 * 119.99686 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 13 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 O 1.42895 * 109.49171 * 154.76559 * 8 7 5 24 24 C 1.38219 * 119.97392 * 359.45178 * 7 5 4 25 25 H 1.09005 * 109.47253 * 269.97602 * 1 2 3 26 26 H 1.09002 * 109.47378 * 29.97602 * 1 2 3 27 27 H 1.09000 * 109.47271 * 149.97452 * 1 2 3 28 28 H 1.08000 * 119.98881 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.01787 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.52605 * 62.49487 * 10 8 7 31 31 H 1.08998 * 109.52858 * 302.30176 * 10 8 7 32 32 H 1.09001 * 109.54445 * 297.11480 * 11 10 8 33 33 H 1.09002 * 109.61617 * 176.89291 * 11 10 8 34 34 H 1.09007 * 109.52519 * 183.11349 * 12 11 10 35 35 H 1.09000 * 109.57884 * 62.95731 * 12 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 37 37 H 1.08000 * 119.98600 * 180.27702 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0005 5 6 4.2725 -0.0001 0.0051 6 9 5.6235 -0.0001 0.0107 7 6 3.5797 -1.1987 -0.0007 8 6 4.3323 -2.5043 -0.0007 9 1 5.2429 -2.3989 0.5889 10 6 4.6962 -2.8837 -1.4386 11 6 5.4077 -4.2402 -1.4359 12 6 4.4990 -5.2797 -0.7726 13 6 4.1427 -4.8077 0.6395 14 1 5.0510 -4.7327 1.2377 15 6 3.2012 -5.7965 1.2773 16 1 2.8847 -6.6716 0.7293 17 6 2.7392 -5.5809 2.5584 18 7 3.1246 -4.5152 3.2258 19 14 1.5660 -6.8026 3.3461 20 1 2.3440 -7.8413 4.0678 21 1 0.6812 -6.0920 4.3040 22 1 0.7400 -7.4455 2.2926 23 8 3.5124 -3.5273 0.5677 24 6 2.1975 -1.1974 -0.0006 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6572 2.1326 0.0004 29 1 4.1190 2.1345 -0.0010 30 1 5.3577 -2.1262 -1.8590 31 1 3.7887 -2.9496 -2.0387 32 1 6.3403 -4.1617 -0.8772 33 1 5.6211 -4.5435 -2.4609 34 1 5.0196 -6.2358 -0.7166 35 1 3.5874 -5.3951 -1.3589 36 1 2.7998 -4.3637 4.1272 37 1 1.6569 -2.1323 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393840529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:39 Heat of formation + Delta-G solvation = -102.768395 kcal Electronic energy + Delta-G solvation = -20347.683113 eV Core-core repulsion = 17195.800145 eV Total energy + Delta-G solvation = -3151.882967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.89190 -40.66509 -39.35571 -35.14531 -34.23824 -33.69755 -32.79225 -30.66041 -27.83239 -27.29500 -25.50779 -23.77909 -23.27683 -21.57323 -20.92380 -18.82698 -18.38513 -17.65851 -16.87144 -16.64981 -16.37984 -16.18743 -15.68717 -15.31070 -15.01135 -14.86888 -14.62772 -14.40526 -14.27963 -14.04094 -13.46204 -12.91493 -12.87265 -12.84534 -12.67103 -12.51607 -12.46377 -12.12614 -12.02681 -11.88627 -11.79061 -11.31430 -10.91723 -10.59665 -10.03520 -9.68489 -9.34435 -8.16119 -6.37518 0.17941 0.32087 1.39923 1.41221 1.52347 2.39280 2.61482 2.94399 3.32065 3.44049 3.74267 3.91140 4.00819 4.04862 4.06360 4.22844 4.32063 4.40369 4.45578 4.49811 4.71894 4.81580 4.86478 4.88737 4.97945 5.01671 5.07107 5.10629 5.15088 5.22387 5.24256 5.31476 5.45218 5.55472 5.63672 5.75090 6.01010 6.18171 6.64883 7.12790 7.38719 8.91556 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.007166 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.794979 B = 3906.188506 C = 4819.567989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.145 4.145 5 C 0.069 3.931 6 F -0.150 7.150 7 C -0.116 4.116 8 C 0.119 3.881 9 H 0.025 0.975 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.136 4.136 13 C 0.215 3.785 14 H -0.026 1.026 15 C -0.550 4.550 16 H 0.068 0.932 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.963 3.037 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.263 1.263 23 O -0.372 6.372 24 C -0.083 4.083 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 11.069 -8.596 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.108 4.108 4 C -0.164 4.164 5 C 0.050 3.950 6 F -0.129 7.129 7 C -0.117 4.117 8 C 0.060 3.940 9 H 0.043 0.957 10 C -0.166 4.166 11 C -0.152 4.152 12 C -0.174 4.174 13 C 0.159 3.841 14 H -0.008 1.008 15 C -0.587 4.587 16 H 0.086 0.914 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.187 1.187 23 O -0.291 6.291 24 C -0.102 4.102 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.189 0.811 29 H 0.181 0.819 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.387 11.186 -8.379 14.179 hybrid contribution 0.376 -0.947 0.816 1.305 sum -2.012 10.239 -7.564 12.888 Atomic orbital electron populations 1.20821 0.88726 1.03981 1.03032 1.20354 0.98107 0.92284 0.99286 1.21264 0.92637 0.98717 0.98196 1.21369 0.95618 0.96358 1.03030 1.17747 0.76531 0.94589 1.06162 1.91424 1.29725 1.97455 1.94280 1.19883 0.95406 0.93107 1.03339 1.20581 0.92091 0.87221 0.94083 0.95728 1.22036 1.00987 0.98010 0.95549 1.21606 0.97803 0.94264 1.01542 1.22109 0.99221 0.98676 0.97343 1.19608 0.92162 0.81149 0.91161 1.00820 1.21414 1.31334 1.06626 0.99301 0.91419 1.25969 0.97380 0.96782 0.97654 1.70201 1.43942 1.27806 1.11440 0.85511 0.78788 0.78728 0.78308 1.19539 1.20827 1.18735 1.88232 1.40509 1.18704 1.81702 1.20835 0.92481 0.98881 0.97973 0.90816 0.88516 0.91802 0.81072 0.81889 0.90517 0.91349 0.92763 0.89250 0.91581 0.92455 0.93023 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 10.01 71.24 0.71 -1.64 16 2 C -0.10 -2.85 5.88 -19.86 -0.12 -2.97 16 3 C -0.09 -2.11 9.70 22.26 0.22 -1.90 16 4 C -0.15 -3.82 10.03 22.31 0.22 -3.60 16 5 C 0.07 2.40 7.24 22.38 0.16 2.56 16 6 F -0.15 -5.39 16.57 44.97 0.74 -4.65 16 7 C -0.12 -4.67 5.07 -19.82 -0.10 -4.77 16 8 C 0.12 5.37 2.64 29.88 0.08 5.44 16 9 H 0.02 1.22 7.78 -2.39 -0.02 1.20 16 10 C -0.13 -4.75 5.40 30.69 0.17 -4.58 16 11 C -0.11 -4.12 6.03 30.71 0.19 -3.93 16 12 C -0.14 -5.85 5.36 30.68 0.16 -5.68 16 13 C 0.21 11.65 2.50 29.88 0.07 11.73 16 14 H -0.03 -1.55 8.14 -2.38 -0.02 -1.57 16 15 C -0.55 -31.70 8.79 25.60 0.23 -31.48 16 16 H 0.07 3.74 7.74 -2.92 -0.02 3.71 16 17 C 0.02 1.43 5.40 84.66 0.46 1.89 16 18 N -0.90 -55.09 12.85 21.45 0.28 -54.81 16 19 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 O -0.37 -20.08 8.28 -148.98 -1.23 -21.32 16 24 C -0.08 -3.16 9.00 22.26 0.20 -2.96 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 27 H 0.06 1.43 8.08 -2.39 -0.02 1.42 16 28 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.11 4.88 7.35 -2.91 -0.02 4.86 16 Total: -1.00 -68.98 310.21 5.51 -63.48 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.05 Total: 12.77 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 2.65 Total: -41.89 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.23 Total: -21.32 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.74 Total: -4.65 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.98 5.51 -63.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393840529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.292 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds