Wall clock time and date at job start Mon Mar 30 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38258 * 119.99551 * 0.46928 * 4 3 2 6 6 C 1.38216 * 120.00160 * 359.76035 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.46934 * 89.99586 * 8 7 2 10 10 C 1.81402 * 102.99652 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46761 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47059 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47514 * 180.02562 * 12 11 10 14 14 C 1.50692 * 109.47356 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00166 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00378 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99744 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 90.00257 * 18 16 14 20 20 H 1.48501 * 109.47099 * 209.99716 * 18 16 14 21 21 H 1.48503 * 109.47120 * 329.99713 * 18 16 14 22 22 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 25 25 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.00140 * 180.25074 * 4 3 2 27 27 H 1.08002 * 120.00008 * 179.78995 * 5 4 3 28 28 H 1.08004 * 119.99832 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47489 * 209.99894 * 8 7 2 30 30 H 1.09002 * 109.46869 * 330.00524 * 8 7 2 31 31 H 1.08998 * 109.47326 * 300.00334 * 10 9 8 32 32 H 1.09004 * 109.47224 * 60.00829 * 10 9 8 33 33 H 1.08998 * 109.47259 * 300.00113 * 11 10 9 34 34 H 1.08997 * 109.47247 * 60.00789 * 11 10 9 35 35 H 1.09010 * 109.47176 * 300.00246 * 12 11 10 36 36 H 1.09001 * 109.47261 * 59.99526 * 12 11 10 37 37 H 1.09005 * 109.46529 * 299.99983 * 13 12 11 38 38 H 1.08996 * 109.47000 * 59.99631 * 13 12 11 39 39 H 0.97000 * 120.00082 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 16 1.1415 -3.0177 -1.7241 10 6 0.2411 -4.5801 -1.5265 11 6 -0.0935 -5.1536 -2.9049 12 6 -0.8535 -6.4710 -2.7383 13 6 -1.1877 -7.0450 -4.1166 14 6 -1.9356 -8.3428 -3.9525 15 1 -2.1516 -8.7204 -2.9640 16 6 -2.3453 -9.0478 -5.0643 17 7 -2.9977 -10.1808 -4.9211 18 14 -1.9725 -8.3945 -6.7742 19 1 -0.6611 -8.9212 -7.2303 20 1 -3.0356 -8.8321 -7.7140 21 1 -1.9243 -6.9107 -6.7375 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6583 2.1326 0.0004 26 1 4.1205 2.1326 0.0085 27 1 5.3518 -0.0001 -0.0010 28 1 4.1207 -2.1323 -0.0096 29 1 2.0338 -3.2641 0.4985 30 1 0.4923 -2.3741 0.5032 31 1 0.8609 -5.2899 -0.9787 32 1 -0.6811 -4.4006 -0.9737 33 1 -0.7131 -4.4440 -3.4531 34 1 0.8287 -5.3333 -3.4574 35 1 -0.2342 -7.1810 -2.1899 36 1 -1.7758 -6.2911 -2.1859 37 1 -1.8068 -6.3352 -4.6653 38 1 -0.2652 -7.2250 -4.6686 39 1 -3.2862 -10.6765 -5.7034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395328912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:17 Heat of formation + Delta-G solvation = -11.349972 kcal Electronic energy + Delta-G solvation = -16338.024251 eV Core-core repulsion = 13756.318660 eV Total energy + Delta-G solvation = -2581.705591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 264.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73516 -35.33613 -33.64307 -32.59092 -32.39034 -29.95701 -27.93928 -26.71161 -25.39582 -22.42457 -21.78008 -20.91060 -20.09842 -16.80950 -16.63708 -16.05005 -15.99578 -15.27591 -15.19534 -14.51577 -14.22196 -13.61604 -13.43455 -13.35617 -13.30528 -12.79554 -12.77565 -12.40469 -12.31687 -12.14741 -11.70004 -11.29768 -11.21222 -11.17315 -10.91655 -10.64106 -10.05966 -9.91106 -9.71187 -9.49878 -9.16643 -9.02050 -8.76864 -8.52318 -7.67562 -6.03083 -4.01024 0.81380 1.13897 1.88482 2.60717 3.32647 3.39899 3.44476 3.56804 4.38578 4.47058 4.48497 4.68751 4.75075 4.90776 5.06936 5.10140 5.14117 5.25805 5.29667 5.31332 5.40351 5.46420 5.59830 5.66353 5.77937 5.89648 5.95287 5.99296 6.20491 6.24824 6.28980 6.37451 6.57399 6.68646 6.74010 6.91199 7.31783 7.44898 7.81153 8.55241 9.01696 9.59741 11.10405 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.044727 B = 0.002774 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.870511 B =10092.311593 C =10143.782962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.071 4.071 8 C -0.051 4.051 9 S -0.259 6.259 10 C -0.081 4.081 11 C -0.105 4.105 12 C -0.096 4.096 13 C -0.014 4.014 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.067 22.931 12.112 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.118 4.118 7 C -0.073 4.073 8 C -0.199 4.199 9 S -0.029 6.029 10 C -0.230 4.230 11 C -0.144 4.144 12 C -0.136 4.136 13 C -0.052 4.052 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.250 23.261 11.073 28.526 hybrid contribution -0.137 -0.444 0.193 0.503 sum 12.112 22.818 11.265 28.182 Atomic orbital electron populations 1.20931 0.91016 1.03822 1.02325 1.19791 0.96274 0.92370 0.98376 1.21021 0.94287 0.97372 1.01411 1.21159 0.94320 0.98079 0.99785 1.21106 0.99904 0.92384 1.01150 1.21047 0.93288 0.98493 0.98956 1.19120 0.93493 0.92790 1.01865 1.22300 1.03104 0.97428 0.97024 1.87186 1.75369 1.29727 1.10569 1.23561 1.01448 0.94879 1.03066 1.21480 1.01292 0.98436 0.93213 1.21463 0.98578 0.93317 1.00223 1.19576 0.96271 0.96578 0.92755 1.21158 1.35354 1.04508 0.94831 0.91098 1.25046 0.94632 0.94661 0.99263 1.69919 1.39286 1.15070 1.30135 0.86765 0.78085 0.79990 0.84388 1.20292 1.21413 1.18950 0.91182 0.91315 0.90332 0.85979 0.86088 0.85978 0.85802 0.89381 0.89123 0.90205 0.90205 0.91529 0.91532 0.92697 0.92664 0.96583 0.97021 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.20 36.01 0.33 -0.72 16 2 C -0.07 -0.65 5.88 -104.62 -0.62 -1.27 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 4 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 5 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 6 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 7 C -0.07 -0.74 5.14 -104.62 -0.54 -1.28 16 8 C -0.05 -0.53 5.33 36.01 0.19 -0.33 16 9 S -0.26 -3.38 21.36 -107.50 -2.30 -5.67 16 10 C -0.08 -1.09 5.94 37.16 0.22 -0.87 16 11 C -0.11 -1.70 5.22 -26.73 -0.14 -1.84 16 12 C -0.10 -1.88 5.15 -26.73 -0.14 -2.02 16 13 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 14 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 18 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.08 0.74 6.37 -51.93 -0.33 0.41 16 25 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 26 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 27 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.09 0.85 6.70 -51.92 -0.35 0.50 16 31 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -31.42 333.60 -10.48 -41.90 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.52 Total: -3.20 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -2.79 Total: -27.98 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.77 Total: -27.47 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.42 -10.48 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395328912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.545 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds