Wall clock time and date at job start Mon Mar 30 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38258 * 119.99551 * 0.46928 * 4 3 2 6 6 C 1.38216 * 120.00160 * 359.76035 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.46934 * 89.99586 * 8 7 2 10 10 C 1.81402 * 102.99652 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46761 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47059 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47514 * 180.02562 * 12 11 10 14 14 C 1.50692 * 109.47356 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00166 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00378 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99744 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 90.00257 * 18 16 14 20 20 H 1.48501 * 109.47099 * 209.99716 * 18 16 14 21 21 H 1.48503 * 109.47120 * 329.99713 * 18 16 14 22 22 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 25 25 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.00140 * 180.25074 * 4 3 2 27 27 H 1.08002 * 120.00008 * 179.78995 * 5 4 3 28 28 H 1.08004 * 119.99832 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47489 * 209.99894 * 8 7 2 30 30 H 1.09002 * 109.46869 * 330.00524 * 8 7 2 31 31 H 1.08998 * 109.47326 * 300.00334 * 10 9 8 32 32 H 1.09004 * 109.47224 * 60.00829 * 10 9 8 33 33 H 1.08998 * 109.47259 * 300.00113 * 11 10 9 34 34 H 1.08997 * 109.47247 * 60.00789 * 11 10 9 35 35 H 1.09010 * 109.47176 * 300.00246 * 12 11 10 36 36 H 1.09001 * 109.47261 * 59.99526 * 12 11 10 37 37 H 1.09005 * 109.46529 * 299.99983 * 13 12 11 38 38 H 1.08996 * 109.47000 * 59.99631 * 13 12 11 39 39 H 0.97000 * 120.00082 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 16 1.1415 -3.0177 -1.7241 10 6 0.2411 -4.5801 -1.5265 11 6 -0.0935 -5.1536 -2.9049 12 6 -0.8535 -6.4710 -2.7383 13 6 -1.1877 -7.0450 -4.1166 14 6 -1.9356 -8.3428 -3.9525 15 1 -2.1516 -8.7204 -2.9640 16 6 -2.3453 -9.0478 -5.0643 17 7 -2.9977 -10.1808 -4.9211 18 14 -1.9725 -8.3945 -6.7742 19 1 -0.6611 -8.9212 -7.2303 20 1 -3.0356 -8.8321 -7.7140 21 1 -1.9243 -6.9107 -6.7375 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6583 2.1326 0.0004 26 1 4.1205 2.1326 0.0085 27 1 5.3518 -0.0001 -0.0010 28 1 4.1207 -2.1323 -0.0096 29 1 2.0338 -3.2641 0.4985 30 1 0.4923 -2.3741 0.5032 31 1 0.8609 -5.2899 -0.9787 32 1 -0.6811 -4.4006 -0.9737 33 1 -0.7131 -4.4440 -3.4531 34 1 0.8287 -5.3333 -3.4574 35 1 -0.2342 -7.1810 -2.1899 36 1 -1.7758 -6.2911 -2.1859 37 1 -1.8068 -6.3352 -4.6653 38 1 -0.2652 -7.2250 -4.6686 39 1 -3.2862 -10.6765 -5.7034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395328912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:17 Heat of formation + Delta-G solvation = -26.149396 kcal Electronic energy + Delta-G solvation = -16338.666002 eV Core-core repulsion = 13756.318660 eV Total energy + Delta-G solvation = -2582.347342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 264.124 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38941 -36.92837 -34.64986 -34.30754 -33.06048 -31.71538 -28.65244 -27.52219 -27.01475 -23.51653 -22.93174 -21.87967 -21.55613 -18.86838 -17.53584 -16.91798 -16.79014 -16.44470 -16.31890 -15.92973 -15.44169 -14.77627 -14.67837 -14.34922 -14.25283 -13.98091 -13.79982 -13.71251 -13.40093 -13.05675 -12.95947 -12.84948 -12.46278 -12.24494 -11.91777 -11.87173 -11.77637 -11.44793 -11.38454 -11.29196 -10.90426 -10.76781 -9.70214 -9.46854 -8.67085 -8.30108 -6.34102 0.04640 0.47642 1.01543 1.35774 1.37379 1.49866 1.67043 2.35996 2.89766 3.05303 3.66511 3.80951 3.91626 3.96686 4.05063 4.13476 4.27004 4.39151 4.45465 4.49617 4.51073 4.67588 4.68202 4.79167 4.80258 4.84044 4.95081 5.04733 5.11846 5.13441 5.17016 5.32030 5.53551 5.55439 5.60573 5.61159 5.66886 5.69542 6.10381 6.28140 6.74078 7.30757 8.86690 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.044727 B = 0.002774 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.870511 B =10092.311593 C =10143.782962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.091 4.091 8 C -0.038 4.038 9 S -0.288 6.288 10 C -0.074 4.074 11 C -0.095 4.095 12 C -0.089 4.089 13 C -0.014 4.014 14 C -0.533 4.533 15 H 0.032 0.968 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.247 1.247 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.331 25.304 11.880 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.153 4.153 6 C -0.131 4.131 7 C -0.093 4.093 8 C -0.185 4.185 9 S -0.058 6.058 10 C -0.222 4.222 11 C -0.133 4.133 12 C -0.129 4.129 13 C -0.051 4.051 14 C -0.571 4.571 15 H 0.051 0.949 16 C -0.195 4.195 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.171 1.171 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.158 0.842 26 H 0.162 0.838 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.518 25.641 10.852 30.951 hybrid contribution -0.511 -1.155 0.380 1.319 sum 13.007 24.486 11.232 29.915 Atomic orbital electron populations 1.20929 0.90377 1.03622 1.02981 1.20042 0.96989 0.92665 0.98482 1.21324 0.94823 0.97807 1.01057 1.21511 0.94394 0.99006 0.98623 1.21410 1.01049 0.92192 1.00657 1.21255 0.93330 0.99335 0.99207 1.19237 0.93925 0.92926 1.03177 1.22300 1.03758 0.97743 0.94674 1.87247 1.75353 1.29420 1.13744 1.23378 1.02175 0.95303 1.01351 1.21273 1.00581 0.96494 0.94987 1.21309 0.99042 0.95016 0.97494 1.19553 0.95687 0.94339 0.95571 1.21537 1.35732 1.06536 0.93342 0.94924 1.26051 0.94403 0.94839 1.04197 1.70071 1.40823 1.16744 1.31667 0.85635 0.78277 0.80229 0.78385 1.19144 1.20891 1.17082 0.90072 0.90478 0.91530 0.84204 0.83752 0.84080 0.85313 0.88558 0.88287 0.89443 0.89347 0.91632 0.91637 0.92922 0.92872 0.96298 0.96450 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.20 71.24 0.66 -1.24 16 2 C -0.08 -1.45 5.88 -19.86 -0.12 -1.57 16 3 C -0.13 -2.06 9.70 22.27 0.22 -1.85 16 4 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 5 C -0.14 -2.08 10.05 22.27 0.22 -1.86 16 6 C -0.11 -2.02 9.70 22.27 0.22 -1.81 16 7 C -0.09 -1.78 5.14 -19.87 -0.10 -1.89 16 8 C -0.04 -0.72 5.33 71.24 0.38 -0.34 16 9 S -0.29 -7.14 21.36 -56.49 -1.21 -8.35 16 10 C -0.07 -1.87 5.94 71.98 0.43 -1.44 16 11 C -0.09 -2.93 5.22 30.60 0.16 -2.77 16 12 C -0.09 -3.42 5.15 30.59 0.16 -3.27 16 13 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 14 C -0.53 -31.36 9.66 25.60 0.25 -31.12 16 15 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 16 C 0.00 0.10 5.47 84.65 0.46 0.56 16 17 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 18 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.02 8.08 -2.39 -0.02 1.01 16 24 H 0.07 1.19 6.37 -2.39 -0.02 1.17 16 25 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 26 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 28 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.10 1.66 8.08 -2.39 -0.02 1.64 16 30 H 0.10 1.71 6.70 -2.39 -0.02 1.69 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -67.79 333.60 5.18 -62.60 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.94 Total: 9.67 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 3.27 Total: -50.56 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.30 Total: -60.38 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.21 Total: -8.35 kcal Total: -67.79 5.18 -62.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395328912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.452 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds