Wall clock time and date at job start Mon Mar 30 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.46686 * 180.02562 * 10 9 8 12 12 O 1.42900 * 109.47346 * 65.00355 * 11 10 9 13 13 C 1.42898 * 114.00038 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47090 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99816 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00066 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00444 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00119 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47115 * 90.00103 * 18 16 14 20 20 H 1.48497 * 109.47103 * 210.00336 * 18 16 14 21 21 H 1.48498 * 109.47099 * 330.00251 * 18 16 14 22 22 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 23 23 H 1.08995 * 109.47613 * 240.00130 * 1 2 3 24 24 H 1.08998 * 109.47126 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47102 * 119.99807 * 1 2 3 26 26 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 29 29 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 30 30 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 31 31 H 1.08997 * 109.47197 * 185.00519 * 11 10 9 32 32 H 1.09003 * 109.47484 * 305.00300 * 11 10 9 33 33 H 1.09003 * 109.46977 * 299.99519 * 13 12 11 34 34 H 1.09001 * 109.47784 * 59.99420 * 13 12 11 35 35 H 0.96999 * 120.00693 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.11481 * 180.27741 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8426 -3.5761 0.0032 12 8 8.2436 -2.9503 1.2237 13 6 9.6509 -2.7244 1.3260 14 6 9.9590 -2.0634 2.6448 15 1 9.1600 -1.8379 3.3355 16 6 11.2610 -1.7464 2.9695 17 7 12.2340 -2.0205 2.1282 18 14 11.6428 -0.9264 4.6039 19 1 11.9020 -1.9670 5.6312 20 1 12.8439 -0.0656 4.4571 21 1 10.4860 -0.0948 5.0227 22 6 3.6404 -1.2782 0.0000 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 0.4665 -2.4911 0.0025 27 1 1.7017 -4.6157 0.0031 28 1 4.1607 -4.6171 0.0026 29 1 6.0283 -4.3212 0.8935 30 1 6.0283 -4.3235 -0.8864 31 1 8.3310 -4.5465 -0.0851 32 1 8.1298 -2.9468 -0.8392 33 1 10.1772 -3.6771 1.2650 34 1 9.9753 -2.0773 0.5111 35 1 13.1499 -1.7972 2.3565 36 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395380100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:07 Heat of formation + Delta-G solvation = -102.449831 kcal Electronic energy + Delta-G solvation = -18645.161818 eV Core-core repulsion = 15480.919875 eV Total energy + Delta-G solvation = -3164.241943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44350 -39.26602 -37.40585 -36.40427 -32.78723 -31.87330 -31.29978 -29.81098 -28.85655 -26.92730 -24.32085 -22.51861 -22.43023 -22.05355 -19.96488 -18.07545 -16.59359 -16.32535 -16.25144 -16.07122 -15.69945 -15.24391 -14.97433 -14.86170 -14.43125 -14.18825 -13.88475 -13.50785 -12.88468 -12.72742 -12.61196 -12.35444 -12.12848 -11.93532 -11.54797 -11.14010 -11.10814 -10.84264 -10.74475 -10.55297 -10.04629 -9.99612 -9.21844 -9.12711 -8.87788 -8.31650 -8.21321 -6.11310 -4.12983 0.45925 1.27094 2.22984 3.16971 3.31316 3.36253 3.42629 3.63001 3.90675 4.32712 4.56771 4.66379 4.72001 4.83136 4.92735 4.98739 5.08601 5.11932 5.25342 5.29120 5.33372 5.36933 5.66260 5.70820 5.82113 5.89112 6.04129 6.10908 6.14940 6.19692 6.51735 7.04593 7.30917 7.39419 7.44077 7.78934 8.12788 8.52384 8.99635 9.51887 11.00286 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023601 B = 0.003458 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.106798 B = 8095.394229 C = 8903.931860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.394 3.606 3 O -0.452 6.452 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.093 4.093 7 C -0.183 4.183 8 C 0.130 3.870 9 O -0.296 6.296 10 C 0.064 3.936 11 C 0.062 3.938 12 O -0.390 6.390 13 C 0.194 3.806 14 C -0.515 4.515 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.096 4.096 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.276 -4.579 -7.008 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.271 3.729 3 O -0.327 6.327 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.202 4.202 8 C 0.084 3.916 9 O -0.209 6.209 10 C -0.011 4.011 11 C -0.016 4.016 12 O -0.310 6.310 13 C 0.120 3.880 14 C -0.553 4.553 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.736 3.264 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.114 4.114 23 H 0.113 0.887 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.730 -3.784 -6.881 24.048 hybrid contribution 0.544 -0.149 0.566 0.799 sum -22.186 -3.933 -6.315 23.400 Atomic orbital electron populations 1.22229 0.93526 1.05131 1.04549 1.22518 0.91686 0.87500 0.71166 1.90570 1.72187 1.34273 1.35672 1.20263 0.93366 0.94994 1.05136 1.21238 0.99901 0.91306 1.01457 1.20885 0.93368 0.98182 0.98661 1.21568 0.95525 0.97497 1.05621 1.19016 0.83624 0.93664 0.95334 1.86286 1.14995 1.32130 1.87453 1.23008 0.93150 0.83659 1.01273 1.22279 0.90758 0.97865 0.90660 1.87926 1.28156 1.80138 1.34762 1.20239 0.74863 0.95273 0.97589 1.21055 0.92997 1.39201 1.02068 0.91491 1.24948 0.95731 0.95915 0.97895 1.69958 1.00123 1.47825 1.35954 0.86321 0.77928 0.79296 0.82882 1.20452 1.21032 1.19554 1.20730 0.92774 0.97424 1.00515 0.88749 0.89702 0.88805 0.85110 0.85241 0.84913 0.91168 0.91218 0.92048 0.93194 0.97623 0.97492 0.92624 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 8.93 36.01 0.32 -0.91 16 2 C 0.39 4.35 7.23 -30.68 -0.22 4.13 16 3 O -0.45 -6.82 17.08 5.59 0.10 -6.72 16 4 C -0.14 -1.58 5.87 -105.08 -0.62 -2.19 16 5 C -0.12 -1.05 9.47 -39.10 -0.37 -1.42 16 6 C -0.09 -0.83 10.02 -39.67 -0.40 -1.23 16 7 C -0.18 -2.06 9.04 -39.32 -0.36 -2.41 16 8 C 0.13 1.88 6.68 -39.29 -0.26 1.62 16 9 O -0.30 -5.08 10.10 -24.34 -0.25 -5.32 16 10 C 0.06 0.94 5.12 37.16 0.19 1.13 16 11 C 0.06 1.13 6.32 37.16 0.23 1.36 16 12 O -0.39 -9.61 10.29 -40.08 -0.41 -10.03 16 13 C 0.19 5.41 5.69 36.01 0.20 5.61 16 14 C -0.52 -15.49 9.43 -34.44 -0.32 -15.82 16 15 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.10 -1.37 9.54 -38.94 -0.37 -1.75 16 23 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 24 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 25 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.13 0.69 7.05 -52.49 -0.37 0.32 16 27 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.13 1.25 6.27 -52.49 -0.33 0.92 16 29 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 30 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.14 2.23 7.65 -52.49 -0.40 1.83 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -34.96 317.71 -6.94 -41.91 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -4.82 Total: -5.05 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.07 Total: -10.32 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.56 Total: -22.07 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.96 -6.94 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395380100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.544 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds