Wall clock time and date at job start Mon Mar 30 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.46686 * 180.02562 * 10 9 8 12 12 O 1.42900 * 109.47346 * 65.00355 * 11 10 9 13 13 C 1.42898 * 114.00038 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47090 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99816 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00066 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00444 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00119 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47115 * 90.00103 * 18 16 14 20 20 H 1.48497 * 109.47103 * 210.00336 * 18 16 14 21 21 H 1.48498 * 109.47099 * 330.00251 * 18 16 14 22 22 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 23 23 H 1.08995 * 109.47613 * 240.00130 * 1 2 3 24 24 H 1.08998 * 109.47126 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47102 * 119.99807 * 1 2 3 26 26 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 29 29 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 30 30 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 31 31 H 1.08997 * 109.47197 * 185.00519 * 11 10 9 32 32 H 1.09003 * 109.47484 * 305.00300 * 11 10 9 33 33 H 1.09003 * 109.46977 * 299.99519 * 13 12 11 34 34 H 1.09001 * 109.47784 * 59.99420 * 13 12 11 35 35 H 0.96999 * 120.00693 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.11481 * 180.27741 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8426 -3.5761 0.0032 12 8 8.2436 -2.9503 1.2237 13 6 9.6509 -2.7244 1.3260 14 6 9.9590 -2.0634 2.6448 15 1 9.1600 -1.8379 3.3355 16 6 11.2610 -1.7464 2.9695 17 7 12.2340 -2.0205 2.1282 18 14 11.6428 -0.9264 4.6039 19 1 11.9020 -1.9670 5.6312 20 1 12.8439 -0.0656 4.4571 21 1 10.4860 -0.0948 5.0227 22 6 3.6404 -1.2782 0.0000 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 0.4665 -2.4911 0.0025 27 1 1.7017 -4.6157 0.0031 28 1 4.1607 -4.6171 0.0026 29 1 6.0283 -4.3212 0.8935 30 1 6.0283 -4.3235 -0.8864 31 1 8.3310 -4.5465 -0.0851 32 1 8.1298 -2.9468 -0.8392 33 1 10.1772 -3.6771 1.2650 34 1 9.9753 -2.0773 0.5111 35 1 13.1499 -1.7972 2.3565 36 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395380100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:06 Heat of formation + Delta-G solvation = -126.174534 kcal Electronic energy + Delta-G solvation = -18646.190599 eV Core-core repulsion = 15480.919875 eV Total energy + Delta-G solvation = -3165.270723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39107 -40.28608 -38.76477 -37.87406 -34.99743 -32.71474 -32.37867 -30.97953 -29.74014 -28.97639 -25.33169 -24.54810 -23.40594 -23.32161 -20.89837 -19.02786 -18.71492 -17.79119 -17.39878 -17.02808 -16.77298 -16.57796 -16.24671 -16.14961 -15.88574 -15.73483 -15.02811 -14.69463 -14.21647 -13.84854 -13.60925 -13.33275 -13.17465 -13.02119 -12.93359 -12.81805 -12.69562 -12.50251 -12.14020 -11.97361 -11.79521 -11.33521 -10.94165 -10.85713 -10.31600 -10.08840 -9.26925 -8.36687 -6.49372 -0.41030 0.40633 1.36656 1.39483 1.39939 1.52149 2.13745 2.31388 2.77613 2.96905 3.05391 3.12825 3.75359 3.91582 4.00665 4.04135 4.11140 4.25430 4.32631 4.41460 4.43523 4.47285 4.63858 4.71583 4.77414 4.80204 4.88165 5.12083 5.12895 5.28532 5.30682 5.38511 5.49604 5.72579 5.90505 6.39619 6.48244 6.50602 6.75367 7.22509 8.75673 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023601 B = 0.003458 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.106798 B = 8095.394229 C = 8903.931860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.391 3.609 3 O -0.510 6.510 4 C -0.150 4.150 5 C -0.097 4.097 6 C -0.085 4.085 7 C -0.180 4.180 8 C 0.098 3.902 9 O -0.339 6.339 10 C 0.070 3.930 11 C 0.048 3.952 12 O -0.411 6.411 13 C 0.208 3.792 14 C -0.554 4.554 15 H 0.058 0.942 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.134 4.134 23 H 0.123 0.877 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.180 0.820 27 H 0.175 0.825 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.044 0.956 33 H -0.004 1.004 34 H -0.016 1.016 35 H 0.272 0.728 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.229 -6.548 -6.458 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.272 3.728 3 O -0.389 6.389 4 C -0.151 4.151 5 C -0.114 4.114 6 C -0.102 4.102 7 C -0.198 4.198 8 C 0.053 3.947 9 O -0.254 6.254 10 C -0.005 4.005 11 C -0.028 4.028 12 O -0.331 6.331 13 C 0.134 3.866 14 C -0.591 4.591 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.806 3.194 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.153 4.153 23 H 0.141 0.859 24 H 0.101 0.899 25 H 0.143 0.857 26 H 0.197 0.803 27 H 0.192 0.808 28 H 0.171 0.829 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.002 0.998 35 H 0.081 0.919 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.714 -5.785 -6.351 27.111 hybrid contribution 1.351 0.390 0.300 1.438 sum -24.363 -5.395 -6.051 25.677 Atomic orbital electron populations 1.22279 0.88903 1.06083 1.07183 1.23371 0.94076 0.86400 0.68942 1.90555 1.73743 1.35989 1.38661 1.20552 0.92182 0.96924 1.05478 1.21789 1.02142 0.89650 0.97866 1.21457 0.92386 1.00082 0.96287 1.21887 0.96902 0.96669 1.04387 1.19235 0.82636 0.95011 0.97867 1.86203 1.17057 1.33524 1.88581 1.23046 0.90267 0.83447 1.03704 1.22704 0.93873 0.98320 0.87921 1.87869 1.26010 1.81105 1.38161 1.19856 0.76687 0.93980 0.96117 1.21390 0.93646 1.40963 1.03125 0.92422 1.25959 0.95124 0.95926 1.02092 1.70053 1.00753 1.48038 1.37938 0.85180 0.77928 0.78504 0.77784 1.18775 1.19656 1.19360 1.20720 0.94578 0.96377 1.03615 0.85910 0.89885 0.85676 0.80268 0.80783 0.82912 0.90402 0.86791 0.89609 0.93740 0.98631 0.99846 0.91880 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 8.93 71.24 0.64 -1.10 16 2 C 0.39 8.55 7.23 28.04 0.20 8.75 16 3 O -0.51 -16.58 17.08 -2.93 -0.05 -16.63 16 4 C -0.15 -3.38 5.87 -20.16 -0.12 -3.50 16 5 C -0.10 -1.28 9.47 22.58 0.21 -1.07 16 6 C -0.08 -1.12 10.02 22.21 0.22 -0.90 16 7 C -0.18 -3.62 9.04 22.44 0.20 -3.41 16 8 C 0.10 2.91 6.68 22.46 0.15 3.06 16 9 O -0.34 -12.28 10.10 -88.00 -0.89 -13.17 16 10 C 0.07 2.03 5.12 71.98 0.37 2.39 16 11 C 0.05 1.81 6.32 71.98 0.45 2.27 16 12 O -0.41 -21.21 10.29 -144.34 -1.49 -22.70 16 13 C 0.21 12.17 5.69 71.24 0.41 12.57 16 14 C -0.55 -34.46 9.43 25.60 0.24 -34.22 16 15 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 16 C 0.01 0.46 5.46 84.65 0.46 0.92 16 17 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 18 Si 0.98 45.83 29.54 68.60 2.03 47.86 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.13 -4.16 9.54 22.69 0.22 -3.95 16 23 H 0.12 0.50 8.08 -2.39 -0.02 0.48 16 24 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 25 H 0.13 0.43 8.09 -2.39 -0.02 0.41 16 26 H 0.18 0.64 7.05 -2.91 -0.02 0.62 16 27 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 28 H 0.15 2.36 6.27 -2.91 -0.02 2.34 16 29 H 0.08 2.10 7.66 -2.39 -0.02 2.08 16 30 H 0.11 2.25 7.65 -2.39 -0.02 2.23 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.10 3.86 7.65 -2.91 -0.02 3.84 16 Total: -1.00 -82.97 317.71 4.62 -78.36 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 1.07 Total: 1.15 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 3.66 Total: -18.18 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -2.42 Total: -52.51 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -82.97 4.62 -78.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395380100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.819 kcal (2) G-P(sol) polarization free energy of solvation -82.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds