Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.30425 * 120.00219 * 2 1 4 4 N 1.37573 * 120.00102 * 184.26778 * 3 2 1 5 5 C 1.46499 * 119.99815 * 359.97438 * 4 3 2 6 6 S 1.76200 * 120.00216 * 4.26386 * 3 2 1 7 7 C 1.80997 * 99.99940 * 185.44267 * 6 3 2 8 8 C 1.50711 * 109.46692 * 175.95709 * 7 6 3 9 9 C 1.38631 * 119.74966 * 269.72544 * 8 7 6 10 10 C 1.37620 * 120.24513 * 179.72479 * 9 8 7 11 11 C 1.40708 * 119.74708 * 0.56678 * 10 9 8 12 12 C 1.41395 * 120.24532 * 179.68102 * 11 10 9 13 13 H 1.07999 * 119.99866 * 158.42746 * 12 11 10 14 14 C 1.39941 * 119.99965 * 338.43083 * 12 11 10 15 15 N 1.30817 * 120.00333 * 327.39948 * 14 12 11 16 16 Si 1.86801 * 119.99884 * 147.39993 * 14 12 11 17 17 H 1.48503 * 109.47510 * 94.98385 * 16 14 12 18 18 H 1.48503 * 109.47147 * 214.98323 * 16 14 12 19 19 H 1.48499 * 109.47281 * 334.98233 * 16 14 12 20 20 C 1.40719 * 119.51000 * 359.71185 * 11 10 9 21 21 C 1.37618 * 119.74474 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.47327 * 175.49486 * 1 2 3 23 23 H 1.09008 * 109.46895 * 55.49921 * 1 2 3 24 24 H 1.08997 * 109.47558 * 295.50080 * 1 2 3 25 25 H 0.96999 * 120.00116 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47287 * 60.00109 * 5 4 3 27 27 H 1.08999 * 109.47041 * 180.02562 * 5 4 3 28 28 H 1.09009 * 109.47075 * 300.00272 * 5 4 3 29 29 H 1.08994 * 109.47044 * 295.95400 * 7 6 3 30 30 H 1.08996 * 109.47610 * 55.96204 * 7 6 3 31 31 H 1.07999 * 119.87375 * 359.97438 * 9 8 7 32 32 H 1.08002 * 120.12199 * 180.28261 * 10 9 8 33 33 H 0.96998 * 120.00218 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.12629 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.87261 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1171 1.1295 0.0000 4 7 3.4900 1.1311 -0.0887 5 6 4.2194 -0.1359 -0.1825 6 16 1.2399 2.6534 0.1135 7 6 2.6072 3.8198 -0.1009 8 6 2.0666 5.2262 -0.1372 9 6 1.7040 5.7927 -1.3494 10 6 1.2040 7.0740 -1.3937 11 6 1.0726 7.8138 -0.2040 12 6 0.5664 9.1335 -0.2382 13 1 0.1414 9.5721 0.6526 14 6 0.6160 9.8715 -1.4262 15 7 1.6028 9.6931 -2.2663 16 14 -0.7268 11.1112 -1.8124 17 1 -0.2955 12.4619 -1.3711 18 1 -0.9808 11.1262 -3.2755 19 1 -1.9719 10.7312 -1.0978 20 6 1.4493 7.2306 1.0200 21 6 1.9409 5.9454 1.0413 22 1 -0.3634 -1.0245 -0.0807 23 1 -0.3633 0.5821 -0.8470 24 1 -0.3634 0.4424 0.9275 25 1 3.9751 1.9711 -0.0883 26 1 3.8986 -0.6747 -1.0741 27 1 5.2891 0.0644 -0.2438 28 1 4.0132 -0.7402 0.7010 29 1 3.3039 3.7198 0.7313 30 1 3.1247 3.6053 -1.0359 31 1 1.8106 5.2248 -2.2619 32 1 0.9178 7.5118 -2.3387 33 1 1.6374 10.2048 -3.0896 34 1 1.3531 7.7895 1.9391 35 1 2.2302 5.4956 1.9796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399025574.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 29.660141 kcal Electronic energy + Delta-G solvation = -16672.474588 eV Core-core repulsion = 13989.006986 eV Total energy + Delta-G solvation = -2683.467602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.75185 -37.36724 -34.25448 -33.69513 -31.42445 -29.45325 -28.10681 -27.33473 -25.47601 -23.99275 -21.18541 -20.69110 -20.02881 -17.99667 -17.46800 -15.62884 -15.39628 -15.24289 -14.75896 -14.46546 -14.07265 -13.89178 -13.63706 -13.34346 -12.72432 -12.54203 -12.42616 -12.17111 -12.10088 -11.79091 -11.30119 -11.19908 -11.09154 -10.85730 -10.68416 -10.30582 -9.86835 -9.55712 -9.12428 -8.83840 -8.22831 -7.65397 -7.53752 -7.51948 -7.07018 -4.46527 1.59825 2.30335 2.46875 2.77866 2.94788 2.98417 3.02867 3.22550 3.54147 3.78885 4.38464 5.13789 5.21254 5.33313 5.43354 5.56682 5.59445 5.72888 5.76434 5.86525 5.96156 6.01183 6.19312 6.23808 6.80843 6.87717 6.96227 7.06285 7.17107 7.24448 7.44459 7.68292 7.87284 7.92437 8.11060 8.19385 8.44106 8.69560 8.80427 9.87565 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.038962 B = 0.003849 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.471097 B = 7272.609864 C = 7453.367304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.602 5.602 3 C 0.392 3.608 4 N -0.728 5.728 5 C 0.108 3.892 6 S -0.160 6.160 7 C -0.025 4.025 8 C -0.229 4.229 9 C -0.069 4.069 10 C -0.182 4.182 11 C 0.122 3.878 12 C -0.460 4.460 13 H 0.084 0.916 14 C 0.088 3.912 15 N -0.761 5.761 16 Si 0.898 3.102 17 H -0.268 1.268 18 H -0.272 1.272 19 H -0.256 1.256 20 C -0.232 4.232 21 C -0.059 4.059 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.406 0.594 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.286 0.714 34 H 0.094 0.906 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -9.515 1.021 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.335 5.335 3 C 0.005 3.995 4 N -0.371 5.371 5 C -0.039 4.039 6 S 0.073 5.927 7 C -0.172 4.172 8 C -0.234 4.234 9 C -0.089 4.089 10 C -0.202 4.202 11 C 0.119 3.881 12 C -0.487 4.487 13 H 0.102 0.898 14 C -0.135 4.135 15 N -0.383 5.383 16 Si 0.721 3.279 17 H -0.193 1.193 18 H -0.197 1.197 19 H -0.179 1.179 20 C -0.252 4.252 21 C -0.080 4.080 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.243 0.757 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.713 -10.417 0.964 10.600 hybrid contribution 0.566 1.411 -0.436 1.581 sum 2.278 -9.006 0.528 9.304 Atomic orbital electron populations 1.21996 0.87096 1.01583 1.00751 1.71710 1.09167 1.21333 1.31335 1.24430 0.88210 0.93598 0.93251 1.44431 1.02400 1.09402 1.80832 1.21395 0.94681 0.85967 1.01863 1.87232 1.18945 0.96655 1.89916 1.22188 0.95704 0.95770 1.03506 1.18222 1.17851 0.92804 0.94490 1.20436 0.98108 0.95328 0.94997 1.21018 1.07165 0.93631 0.98385 1.17604 0.86896 0.92612 0.91029 1.19649 1.34521 0.97882 0.96681 0.89780 1.25987 0.94849 0.97408 0.95291 1.69910 1.25113 1.34145 1.09148 0.86468 0.82497 0.80208 0.78737 1.19315 1.19727 1.17945 1.20886 1.10629 0.96262 0.97461 1.20361 0.98008 0.94388 0.95198 0.90881 0.92993 0.93224 0.75654 0.92700 0.91523 0.92726 0.90419 0.90261 0.89329 0.87608 0.90313 0.88736 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.10 59.84 0.60 1.15 16 2 N -0.60 -9.70 10.18 -67.75 -0.69 -10.39 16 3 C 0.39 6.08 7.93 -88.08 -0.70 5.38 16 4 N -0.73 -9.27 5.72 -67.78 -0.39 -9.66 16 5 C 0.11 1.12 10.70 59.85 0.64 1.77 16 6 S -0.16 -2.68 20.49 -107.50 -2.20 -4.89 16 7 C -0.02 -0.40 4.44 36.01 0.16 -0.24 16 8 C -0.23 -4.69 5.16 -104.33 -0.54 -5.23 16 9 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 10 C -0.18 -4.51 8.80 -38.87 -0.34 -4.85 16 11 C 0.12 3.10 5.58 -106.83 -0.60 2.51 16 12 C -0.46 -11.61 8.96 -37.74 -0.34 -11.95 16 13 H 0.08 2.04 8.02 -52.49 -0.42 1.62 16 14 C 0.09 2.08 4.78 -17.35 -0.08 2.00 16 15 N -0.76 -18.53 11.77 55.55 0.65 -17.87 16 16 Si 0.90 17.48 29.66 -169.99 -5.04 12.44 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 20 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 21 C -0.06 -1.27 9.67 -39.66 -0.38 -1.65 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.75 7.87 -51.92 -0.41 0.35 16 24 H 0.05 0.71 8.03 -51.93 -0.42 0.29 16 25 H 0.41 4.59 6.25 -40.82 -0.26 4.34 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.08 1.12 7.60 -51.92 -0.39 0.73 16 30 H 0.08 1.19 7.67 -51.92 -0.40 0.79 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.11 2.68 6.52 -52.49 -0.34 2.34 16 33 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 34 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 35 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -27.04 311.70 -10.04 -37.08 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.73 Total: 7.46 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.34 Total: -18.86 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.42 Total: -37.93 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.04 Total: 12.44 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.20 Total: -4.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.04 -10.04 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399025574.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.738 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds