Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.30425 * 120.00219 * 2 1 4 4 N 1.37573 * 120.00102 * 184.26778 * 3 2 1 5 5 C 1.46499 * 119.99815 * 359.97438 * 4 3 2 6 6 S 1.76200 * 120.00216 * 4.26386 * 3 2 1 7 7 C 1.80997 * 99.99940 * 185.44267 * 6 3 2 8 8 C 1.50711 * 109.46692 * 175.95709 * 7 6 3 9 9 C 1.38631 * 119.74966 * 269.72544 * 8 7 6 10 10 C 1.37620 * 120.24513 * 179.72479 * 9 8 7 11 11 C 1.40708 * 119.74708 * 0.56678 * 10 9 8 12 12 C 1.41395 * 120.24532 * 179.68102 * 11 10 9 13 13 H 1.07999 * 119.99866 * 158.42746 * 12 11 10 14 14 C 1.39941 * 119.99965 * 338.43083 * 12 11 10 15 15 N 1.30817 * 120.00333 * 327.39948 * 14 12 11 16 16 Si 1.86801 * 119.99884 * 147.39993 * 14 12 11 17 17 H 1.48503 * 109.47510 * 94.98385 * 16 14 12 18 18 H 1.48503 * 109.47147 * 214.98323 * 16 14 12 19 19 H 1.48499 * 109.47281 * 334.98233 * 16 14 12 20 20 C 1.40719 * 119.51000 * 359.71185 * 11 10 9 21 21 C 1.37618 * 119.74474 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.47327 * 175.49486 * 1 2 3 23 23 H 1.09008 * 109.46895 * 55.49921 * 1 2 3 24 24 H 1.08997 * 109.47558 * 295.50080 * 1 2 3 25 25 H 0.96999 * 120.00116 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47287 * 60.00109 * 5 4 3 27 27 H 1.08999 * 109.47041 * 180.02562 * 5 4 3 28 28 H 1.09009 * 109.47075 * 300.00272 * 5 4 3 29 29 H 1.08994 * 109.47044 * 295.95400 * 7 6 3 30 30 H 1.08996 * 109.47610 * 55.96204 * 7 6 3 31 31 H 1.07999 * 119.87375 * 359.97438 * 9 8 7 32 32 H 1.08002 * 120.12199 * 180.28261 * 10 9 8 33 33 H 0.96998 * 120.00218 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.12629 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.87261 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1171 1.1295 0.0000 4 7 3.4900 1.1311 -0.0887 5 6 4.2194 -0.1359 -0.1825 6 16 1.2399 2.6534 0.1135 7 6 2.6072 3.8198 -0.1009 8 6 2.0666 5.2262 -0.1372 9 6 1.7040 5.7927 -1.3494 10 6 1.2040 7.0740 -1.3937 11 6 1.0726 7.8138 -0.2040 12 6 0.5664 9.1335 -0.2382 13 1 0.1414 9.5721 0.6526 14 6 0.6160 9.8715 -1.4262 15 7 1.6028 9.6931 -2.2663 16 14 -0.7268 11.1112 -1.8124 17 1 -0.2955 12.4619 -1.3711 18 1 -0.9808 11.1262 -3.2755 19 1 -1.9719 10.7312 -1.0978 20 6 1.4493 7.2306 1.0200 21 6 1.9409 5.9454 1.0413 22 1 -0.3634 -1.0245 -0.0807 23 1 -0.3633 0.5821 -0.8470 24 1 -0.3634 0.4424 0.9275 25 1 3.9751 1.9711 -0.0883 26 1 3.8986 -0.6747 -1.0741 27 1 5.2891 0.0644 -0.2438 28 1 4.0132 -0.7402 0.7010 29 1 3.3039 3.7198 0.7313 30 1 3.1247 3.6053 -1.0359 31 1 1.8106 5.2248 -2.2619 32 1 0.9178 7.5118 -2.3387 33 1 1.6374 10.2048 -3.0896 34 1 1.3531 7.7895 1.9391 35 1 2.2302 5.4956 1.9796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399025574.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 14.736673 kcal Electronic energy + Delta-G solvation = -16673.121719 eV Core-core repulsion = 13989.006986 eV Total energy + Delta-G solvation = -2684.114732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.49956 -38.45744 -35.94924 -34.85715 -33.07363 -31.23140 -29.56695 -28.53038 -26.61692 -25.59146 -22.96750 -22.16053 -21.42894 -19.27730 -19.13707 -17.19498 -16.78383 -16.42735 -16.05391 -15.97065 -15.58247 -15.53826 -14.82162 -14.36395 -14.35557 -13.92577 -13.83487 -13.64513 -13.48064 -13.09491 -12.88717 -12.74272 -12.52533 -12.21926 -12.15288 -11.75596 -11.57567 -11.32157 -10.88323 -10.05993 -9.42114 -9.32801 -9.29200 -8.84061 -8.80603 -6.32217 0.24564 0.90776 1.12252 1.24386 1.29945 1.38244 1.50641 1.64836 2.17035 2.50351 2.63721 3.69977 3.98859 4.03452 4.13325 4.47879 4.50083 4.54751 4.59193 4.62630 4.67683 4.75108 4.91567 5.00542 5.04038 5.10857 5.26198 5.39623 5.65221 5.90446 5.97421 6.04214 6.13945 6.19846 6.32726 6.62928 6.87074 6.98503 7.08709 8.16199 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.038962 B = 0.003849 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.471097 B = 7272.609864 C = 7453.367304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.618 5.618 3 C 0.394 3.606 4 N -0.722 5.722 5 C 0.107 3.893 6 S -0.181 6.181 7 C -0.019 4.019 8 C -0.216 4.216 9 C -0.074 4.074 10 C -0.207 4.207 11 C 0.092 3.908 12 C -0.504 4.504 13 H 0.079 0.921 14 C 0.053 3.947 15 N -0.796 5.796 16 Si 0.969 3.031 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.260 1.260 20 C -0.252 4.252 21 C -0.062 4.062 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.414 0.586 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.294 0.706 34 H 0.097 0.903 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 -11.005 1.101 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.352 5.352 3 C 0.007 3.993 4 N -0.365 5.365 5 C -0.040 4.040 6 S 0.051 5.949 7 C -0.166 4.166 8 C -0.220 4.220 9 C -0.094 4.094 10 C -0.227 4.227 11 C 0.089 3.911 12 C -0.531 4.531 13 H 0.097 0.903 14 C -0.168 4.168 15 N -0.419 5.419 16 Si 0.789 3.211 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.184 1.184 20 C -0.272 4.272 21 C -0.082 4.082 22 H 0.107 0.893 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.252 0.748 26 H 0.067 0.933 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.504 -11.886 1.047 12.192 hybrid contribution 0.435 1.602 -0.410 1.709 sum 2.939 -10.284 0.637 10.715 Atomic orbital electron populations 1.22036 0.86437 1.02573 1.00374 1.71717 1.09992 1.21304 1.32226 1.24442 0.89276 0.92364 0.93210 1.44571 1.01424 1.10744 1.79721 1.21544 0.96339 0.84836 1.01240 1.87307 1.19245 0.98046 1.90324 1.22168 0.95835 0.92870 1.05737 1.18572 1.15323 0.94679 0.93398 1.20696 0.97457 0.94572 0.96643 1.21000 1.09099 0.94949 0.97626 1.17925 0.87847 0.93278 0.92035 1.19847 1.36844 0.98717 0.97716 0.90335 1.26733 0.96424 0.99027 0.94587 1.69917 1.26480 1.35596 1.09873 0.85400 0.79054 0.77926 0.78696 1.18254 1.18772 1.18378 1.21094 1.11423 0.97591 0.97082 1.20688 0.97036 0.93599 0.96834 0.89263 0.93465 0.93480 0.74766 0.93348 0.88104 0.93264 0.87819 0.88407 0.87521 0.89315 0.89470 0.88475 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 10.10 127.77 1.29 2.30 16 2 N -0.62 -18.55 10.18 -368.27 -3.75 -22.30 16 3 C 0.39 11.18 7.93 179.46 1.42 12.60 16 4 N -0.72 -15.91 5.72 -368.35 -2.11 -18.01 16 5 C 0.11 1.87 10.70 127.77 1.37 3.23 16 6 S -0.18 -5.63 20.49 -56.49 -1.16 -6.79 16 7 C -0.02 -0.55 4.44 71.24 0.32 -0.24 16 8 C -0.22 -8.46 5.16 -19.67 -0.10 -8.56 16 9 C -0.07 -3.23 9.67 22.22 0.21 -3.02 16 10 C -0.21 -10.52 8.80 22.73 0.20 -10.32 16 11 C 0.09 4.86 5.58 -21.29 -0.12 4.74 16 12 C -0.50 -26.55 8.96 23.46 0.21 -26.34 16 13 H 0.08 4.03 8.02 -2.91 -0.02 4.00 16 14 C 0.05 2.56 4.78 85.26 0.41 2.97 16 15 N -0.80 -39.91 11.77 21.82 0.26 -39.66 16 16 Si 0.97 36.59 29.66 68.60 2.03 38.63 16 17 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 18 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 20 C -0.25 -12.03 9.80 22.73 0.22 -11.81 16 21 C -0.06 -2.55 9.67 22.22 0.21 -2.33 16 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.05 1.31 7.87 -2.38 -0.02 1.29 16 24 H 0.05 1.28 8.03 -2.39 -0.02 1.26 16 25 H 0.41 7.68 6.25 -92.71 -0.58 7.10 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 2.55 7.60 -2.40 -0.02 2.54 16 30 H 0.10 2.55 7.67 -2.40 -0.02 2.53 16 31 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.09 4.70 6.52 -2.91 -0.02 4.68 16 33 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 34 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -59.38 311.70 1.43 -57.94 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.51 Total: 26.95 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 5.65 Total: -36.77 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -5.60 Total: -79.97 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.16 Total: -6.79 kcal Total: -59.38 1.43 -57.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399025574.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.680 kcal (2) G-P(sol) polarization free energy of solvation -59.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds