Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34708 * 117.00209 * 2 1 4 4 O 1.21472 * 119.99874 * 359.97438 * 3 2 1 5 5 C 1.47728 * 120.00261 * 179.97438 * 3 2 1 6 6 C 1.39651 * 120.14530 * 359.97108 * 5 3 2 7 7 C 1.37923 * 119.84305 * 180.02562 * 6 5 3 8 8 C 1.38391 * 120.15516 * 359.97438 * 7 6 5 9 9 C 1.38348 * 120.30101 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.92549 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47106 * 159.99974 * 10 9 8 12 12 C 1.53002 * 109.46705 * 279.99350 * 10 9 8 13 13 C 1.50695 * 109.47083 * 185.31396 * 12 10 9 14 14 H 1.08002 * 119.99734 * 356.69992 * 13 12 10 15 15 C 1.37879 * 120.00344 * 176.70633 * 13 12 10 16 16 N 1.31510 * 120.00116 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99572 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47135 * 90.00458 * 17 15 13 19 19 H 1.48502 * 109.46838 * 210.00259 * 17 15 13 20 20 H 1.48494 * 109.47179 * 330.00180 * 17 15 13 21 21 O 1.42898 * 109.47026 * 39.99294 * 10 9 8 22 22 C 1.42906 * 113.99596 * 88.64019 * 21 10 9 23 23 C 1.37972 * 120.14903 * 0.02562 * 9 8 7 24 24 H 1.09008 * 109.46869 * 60.00373 * 1 2 3 25 25 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47282 * 300.00593 * 1 2 3 27 27 H 1.07991 * 120.07846 * 0.03059 * 6 5 3 28 28 H 1.08006 * 119.92226 * 179.97438 * 7 6 5 29 29 H 1.07994 * 119.84899 * 180.27588 * 8 7 6 30 30 H 1.08997 * 109.47300 * 305.31491 * 12 10 9 31 31 H 1.09006 * 109.46739 * 65.31709 * 12 10 9 32 32 H 0.97007 * 119.99989 * 179.97438 * 16 15 13 33 33 H 1.08992 * 109.47037 * 64.62859 * 22 21 10 34 34 H 1.09000 * 109.46805 * 184.63065 * 22 21 10 35 35 H 1.08997 * 109.46979 * 304.62668 * 22 21 10 36 36 H 1.07996 * 120.07281 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1083 0.0017 7 6 5.6793 0.1877 0.0028 8 6 6.3044 1.4224 0.0022 9 6 5.5540 2.5847 0.0010 10 6 6.2435 3.9248 -0.0002 11 1 5.5512 4.6893 -0.3524 12 6 6.6994 4.2650 1.4202 13 6 7.2713 5.6590 1.4438 14 1 7.3553 6.2238 0.5271 15 6 7.6875 6.2133 2.6357 16 7 8.1871 7.4297 2.6562 17 14 7.5416 5.2366 4.2213 18 1 8.7854 4.4546 4.4371 19 1 7.3389 6.1683 5.3597 20 1 6.3846 4.3105 4.1275 21 8 7.3793 3.8752 -0.8660 22 6 7.0891 4.2083 -2.2250 23 6 4.1758 2.5198 0.0010 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8159 -0.8558 0.0017 28 1 6.2711 -0.7157 0.0041 29 1 7.3829 1.4789 -0.0015 30 1 5.8476 4.2102 2.0980 31 1 7.4623 3.5538 1.7370 32 1 8.4795 7.8198 3.4948 33 1 6.7694 5.2486 -2.2838 34 1 7.9832 4.0680 -2.8324 35 1 6.2932 3.5622 -2.5954 36 1 3.5913 3.4279 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000498036552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = -108.273219 kcal Electronic energy + Delta-G solvation = -19528.729906 eV Core-core repulsion = 16364.235442 eV Total energy + Delta-G solvation = -3164.494464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61151 -39.18215 -37.12342 -36.45914 -33.23706 -32.00864 -31.24540 -29.60454 -27.87791 -26.29333 -24.76091 -23.94145 -21.99709 -21.14942 -20.05197 -17.84284 -17.22166 -16.66704 -16.45244 -16.06710 -15.83573 -14.99890 -14.67998 -14.34148 -14.02627 -13.77034 -13.59034 -13.57331 -12.76621 -12.54756 -12.39342 -12.29439 -11.94732 -11.67359 -11.39730 -11.11469 -10.96249 -10.84214 -10.59613 -10.35561 -10.07933 -9.83347 -9.24572 -9.03486 -8.95964 -8.61432 -8.51355 -6.01890 -3.99319 0.75674 1.41547 2.54531 2.56921 3.32736 3.39900 3.42672 3.83729 4.42106 4.46921 4.63851 4.88823 4.92571 4.95592 4.98395 5.23464 5.29743 5.33043 5.44661 5.53146 5.69111 5.75057 5.88445 5.99223 6.06869 6.09950 6.16918 6.29926 6.40925 6.47715 6.68775 6.92945 7.07886 7.15126 7.65916 7.73665 7.91932 8.54424 9.03325 9.59172 11.11560 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.005193 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.369253 B = 5390.843376 C = 5907.706372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.510 3.490 4 O -0.506 6.506 5 C -0.136 4.136 6 C -0.071 4.071 7 C -0.138 4.138 8 C -0.057 4.057 9 C -0.110 4.110 10 C 0.141 3.859 11 H 0.068 0.932 12 C -0.006 4.006 13 C -0.510 4.510 14 H 0.075 0.925 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 O -0.363 6.363 22 C 0.031 3.969 23 C -0.048 4.048 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.033 0.967 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 -16.830 -7.185 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.356 3.644 4 O -0.395 6.395 5 C -0.137 4.137 6 C -0.089 4.089 7 C -0.156 4.156 8 C -0.075 4.075 9 C -0.110 4.110 10 C 0.083 3.917 11 H 0.086 0.914 12 C -0.043 4.043 13 C -0.548 4.548 14 H 0.093 0.907 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 O -0.281 6.281 22 C -0.066 4.066 23 C -0.066 4.066 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.314 -16.445 -6.998 20.635 hybrid contribution -0.521 -0.300 0.786 0.990 sum -10.835 -16.745 -6.212 20.890 Atomic orbital electron populations 1.23262 0.76195 1.03585 1.02677 1.86537 1.23398 1.32892 1.84564 1.21314 0.89264 0.81296 0.72534 1.90839 1.66807 1.35994 1.45848 1.18981 0.88473 0.95119 1.11113 1.21356 0.94002 0.97446 0.96100 1.21159 0.94188 0.98050 1.02231 1.21408 1.01231 0.91372 0.93508 1.20888 0.92995 0.98002 0.99163 1.21149 0.87153 0.89452 0.93945 0.91437 1.19725 0.96999 0.98359 0.89222 1.20971 1.40643 0.97546 0.95657 0.90708 1.24966 0.94738 0.94765 0.98839 1.69902 1.42716 1.14713 1.26826 0.86852 0.79110 0.80272 0.83538 1.20182 1.21341 1.19018 1.88001 1.32888 1.89609 1.17568 1.22700 1.00569 0.98968 0.84346 1.21189 0.94123 0.96708 0.94564 0.91874 0.88081 0.91809 0.84908 0.85274 0.84607 0.94943 0.95863 0.92740 0.94082 0.90398 0.95153 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.26 9.82 -40.51 -0.40 -4.66 16 3 C 0.51 7.45 7.90 34.61 0.27 7.72 16 4 O -0.51 -8.61 16.14 -19.24 -0.31 -8.92 16 5 C -0.14 -1.98 5.87 -104.98 -0.62 -2.60 16 6 C -0.07 -0.87 9.62 -39.17 -0.38 -1.25 16 7 C -0.14 -1.70 10.03 -39.64 -0.40 -2.09 16 8 C -0.06 -0.86 9.35 -39.48 -0.37 -1.23 16 9 C -0.11 -1.87 4.85 -104.68 -0.51 -2.38 16 10 C 0.14 2.82 2.24 -27.88 -0.06 2.76 16 11 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 12 C -0.01 -0.14 3.74 -27.88 -0.10 -0.24 16 13 C -0.51 -14.52 9.44 -34.44 -0.33 -14.84 16 14 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 17 Si 0.87 21.78 27.54 -169.99 -4.68 17.10 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.35 6.45 56.52 0.36 -5.99 16 21 O -0.36 -7.22 9.43 -35.23 -0.33 -7.56 16 22 C 0.03 0.49 10.79 101.05 1.09 1.58 16 23 C -0.05 -0.77 9.21 -39.17 -0.36 -1.13 16 24 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.13 1.32 7.61 -52.49 -0.40 0.92 16 28 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.14 2.01 7.76 -52.49 -0.41 1.60 16 30 H 0.03 0.78 6.97 -51.93 -0.36 0.41 16 31 H 0.02 0.55 7.74 -51.93 -0.40 0.15 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.14 2.25 7.63 -52.49 -0.40 1.85 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -32.97 315.16 -5.90 -38.87 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.92 Total: -2.01 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.79 Total: -10.44 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.04 Total: -21.13 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.68 Total: 17.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.97 -5.90 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000498036552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.399 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds