Wall clock time and date at job start Mon Mar 30 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46925 * 2 1 4 4 C 1.35634 * 116.99983 * 180.02562 * 3 2 1 5 5 C 1.38457 * 120.26550 * 359.71424 * 4 3 2 6 6 C 1.38305 * 120.05144 * 180.30258 * 5 4 3 7 7 C 1.38827 * 120.59127 * 359.95371 * 6 5 4 8 8 C 1.36488 * 120.53908 * 0.04585 * 7 6 5 9 9 C 1.50697 * 120.03477 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47187 * 265.02442 * 9 8 7 11 11 C 1.50707 * 109.47186 * 180.02562 * 10 9 8 12 12 O 1.20827 * 119.99618 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.40726 * 119.93086 * 359.97438 * 8 7 6 15 15 C 1.41152 * 120.29309 * 179.97438 * 14 8 7 16 16 H 1.08004 * 119.99673 * 321.31585 * 15 14 8 17 17 C 1.39935 * 120.00149 * 141.31016 * 15 14 8 18 18 N 1.30866 * 120.00044 * 339.73170 * 17 15 14 19 19 Si 1.86798 * 120.00157 * 159.73237 * 17 15 14 20 20 H 1.48506 * 109.46749 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47222 * 119.99602 * 19 17 15 22 22 H 1.48494 * 109.47027 * 240.00074 * 19 17 15 23 23 H 1.08994 * 109.47107 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47014 * 300.00611 * 1 2 3 25 25 H 1.09000 * 109.46665 * 60.00695 * 1 2 3 26 26 H 1.08985 * 109.47440 * 239.99620 * 2 1 3 27 27 H 1.09000 * 109.46665 * 119.99305 * 2 1 3 28 28 H 1.07996 * 119.97129 * 0.28073 * 5 4 3 29 29 H 1.07996 * 119.70433 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.72973 * 180.02562 * 7 6 5 31 31 H 1.08995 * 109.47235 * 25.02747 * 9 8 7 32 32 H 1.09000 * 109.47167 * 145.02127 * 9 8 7 33 33 H 1.09003 * 109.46946 * 299.99524 * 10 9 8 34 34 H 1.09000 * 109.47323 * 59.99781 * 10 9 8 35 35 H 0.96701 * 117.00248 * 180.02562 * 13 11 10 36 36 H 0.96992 * 119.99964 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3510 1.5251 -0.0005 5 6 4.1995 0.4310 0.0049 6 6 5.5700 0.6174 0.0106 7 6 6.1090 1.8968 0.0101 8 6 5.2949 2.9923 0.0047 9 6 5.8922 4.3759 0.0047 10 6 5.9736 4.8963 1.4412 11 6 6.5703 6.2801 1.4412 12 8 6.8966 6.7972 0.3990 13 8 6.7384 6.9386 2.5986 14 6 3.8972 2.8285 -0.0007 15 6 3.0482 3.9561 -0.0057 16 1 3.3043 4.8275 0.5788 17 6 1.8748 3.9451 -0.7680 18 7 1.7471 3.1017 -1.7604 19 14 0.4907 5.1345 -0.3692 20 1 0.8809 5.9774 0.7895 21 1 0.2288 6.0019 -1.5458 22 1 -0.7377 4.3701 -0.0345 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 3.7909 -0.5686 0.0050 29 1 6.2266 -0.2399 0.0153 30 1 7.1811 2.0262 0.0142 31 1 6.8929 4.3396 -0.4258 32 1 5.2656 5.0421 -0.5882 33 1 4.9728 4.9326 1.8717 34 1 6.6002 4.2300 2.0341 35 1 7.1247 7.8237 2.5482 36 1 0.9336 3.0938 -2.2886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514262391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:14 Heat of formation + Delta-G solvation = -123.779017 kcal Electronic energy + Delta-G solvation = -20105.258742 eV Core-core repulsion = 16940.091896 eV Total energy + Delta-G solvation = -3165.166846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89614 -38.68804 -36.55354 -35.80376 -33.50699 -32.86119 -30.92660 -29.37512 -28.30519 -25.30002 -24.25934 -22.59571 -20.95319 -20.69589 -19.19381 -17.81218 -17.24540 -16.36691 -15.87153 -15.81011 -15.17032 -14.95740 -14.45067 -14.18056 -13.27159 -13.05164 -12.76734 -12.52738 -12.25321 -12.13806 -11.86472 -11.66035 -11.42682 -11.23749 -11.20518 -10.93706 -10.76721 -10.52097 -10.39442 -10.29946 -10.19210 -9.89060 -9.62364 -9.25357 -8.87758 -7.36550 -6.77358 -6.58405 -4.21674 2.57711 2.73251 2.94928 3.17845 3.21646 3.22854 3.48130 4.08376 4.52458 4.75865 5.40336 5.52745 5.60267 5.67281 5.71121 5.87037 5.88876 6.05295 6.15381 6.19636 6.27199 6.39094 6.41869 6.53655 6.58968 6.72656 6.76815 6.96853 7.13092 7.28673 7.34074 7.75936 7.80751 7.99691 8.15768 8.22407 8.52160 8.60396 8.98908 9.20860 10.37524 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.007563 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.274016 B = 3701.320548 C = 4925.570596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.057 3.943 3 O -0.275 6.275 4 C 0.077 3.923 5 C -0.194 4.194 6 C -0.203 4.203 7 C -0.116 4.116 8 C -0.168 4.168 9 C -0.037 4.037 10 C -0.107 4.107 11 C 0.477 3.523 12 O -0.520 6.520 13 O -0.524 6.524 14 C 0.109 3.891 15 C -0.469 4.469 16 H 0.078 0.922 17 C 0.094 3.906 18 N -0.768 5.768 19 Si 0.894 3.106 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.274 1.274 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.401 0.599 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -0.407 5.134 5.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.188 6.188 4 C 0.032 3.968 5 C -0.214 4.214 6 C -0.223 4.223 7 C -0.134 4.134 8 C -0.169 4.169 9 C -0.074 4.074 10 C -0.144 4.144 11 C 0.320 3.680 12 O -0.408 6.408 13 O -0.335 6.335 14 C 0.106 3.894 15 C -0.498 4.498 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.392 5.392 19 Si 0.719 3.281 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.199 1.199 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.258 0.742 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.125 -0.588 4.663 4.833 hybrid contribution -0.391 0.651 -0.001 0.759 sum 0.734 0.063 4.663 4.720 Atomic orbital electron populations 1.21672 0.94543 1.01066 1.02929 1.22396 0.94585 0.85606 0.99366 1.86195 1.19914 1.24132 1.88548 1.19251 0.81224 0.93664 1.02694 1.20722 0.94438 0.96218 1.09975 1.20090 0.93681 0.95596 1.12891 1.20113 0.97186 0.92634 1.03482 1.19074 0.92593 0.92837 1.12440 1.19951 1.00105 0.94888 0.92488 1.21569 1.02873 0.87782 1.02205 1.24110 0.74521 0.88922 0.80411 1.90685 1.47723 1.68970 1.33418 1.84604 1.77195 1.34456 1.37286 1.16765 0.90455 0.90145 0.92019 1.19155 1.04308 1.00664 1.25655 0.90437 1.25581 0.98341 0.95385 0.93338 1.69744 1.26242 1.31229 1.11989 0.86501 0.81584 0.80707 0.79315 1.18686 1.20492 1.19905 0.91932 0.92328 0.91942 0.93756 0.94204 0.88815 0.89302 0.89275 0.92614 0.90179 0.87176 0.88402 0.74160 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.28 37.16 0.38 -1.94 16 2 C 0.06 1.09 5.46 37.16 0.20 1.29 16 3 O -0.28 -6.60 7.05 -18.60 -0.13 -6.73 16 4 C 0.08 1.93 6.17 -38.33 -0.24 1.69 16 5 C -0.19 -4.41 9.04 -39.48 -0.36 -4.77 16 6 C -0.20 -4.40 10.04 -39.34 -0.39 -4.80 16 7 C -0.12 -2.50 9.59 -39.99 -0.38 -2.88 16 8 C -0.17 -3.83 5.16 -104.32 -0.54 -4.37 16 9 C -0.04 -0.75 4.02 -27.89 -0.11 -0.86 16 10 C -0.11 -1.82 5.72 -27.88 -0.16 -1.98 16 11 C 0.48 7.79 8.33 36.01 0.30 8.09 16 12 O -0.52 -9.97 16.74 -18.75 -0.31 -10.28 16 13 O -0.52 -6.78 13.42 -39.24 -0.53 -7.31 16 14 C 0.11 2.76 5.37 -106.68 -0.57 2.19 16 15 C -0.47 -11.98 7.64 -37.84 -0.29 -12.27 16 16 H 0.08 1.90 6.48 -52.48 -0.34 1.56 16 17 C 0.09 2.35 4.41 -17.33 -0.08 2.27 16 18 N -0.77 -19.92 11.25 55.55 0.63 -19.29 16 19 Si 0.89 19.19 29.61 -169.99 -5.03 14.16 16 20 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.84 7.67 -51.94 -0.40 0.44 16 27 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 28 H 0.09 1.92 6.31 -52.49 -0.33 1.59 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.69 8.05 -52.49 -0.42 1.27 16 31 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 32 H 0.08 1.79 7.21 -51.93 -0.37 1.41 16 33 H 0.11 1.94 7.11 -51.93 -0.37 1.57 16 34 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.40 3.32 9.10 45.56 0.41 3.73 16 36 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -29.76 307.12 -6.87 -36.63 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.88 Total: 6.54 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.23 Total: -18.34 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.63 Total: -19.29 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.97 Total: -24.32 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.76 -6.87 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514262391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.154 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds