Wall clock time and date at job start Mon Mar 30 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46925 * 2 1 4 4 C 1.35634 * 116.99983 * 180.02562 * 3 2 1 5 5 C 1.38457 * 120.26550 * 359.71424 * 4 3 2 6 6 C 1.38305 * 120.05144 * 180.30258 * 5 4 3 7 7 C 1.38827 * 120.59127 * 359.95371 * 6 5 4 8 8 C 1.36488 * 120.53908 * 0.04585 * 7 6 5 9 9 C 1.50697 * 120.03477 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47187 * 265.02442 * 9 8 7 11 11 C 1.50707 * 109.47186 * 180.02562 * 10 9 8 12 12 O 1.20827 * 119.99618 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.40726 * 119.93086 * 359.97438 * 8 7 6 15 15 C 1.41152 * 120.29309 * 179.97438 * 14 8 7 16 16 H 1.08004 * 119.99673 * 321.31585 * 15 14 8 17 17 C 1.39935 * 120.00149 * 141.31016 * 15 14 8 18 18 N 1.30866 * 120.00044 * 339.73170 * 17 15 14 19 19 Si 1.86798 * 120.00157 * 159.73237 * 17 15 14 20 20 H 1.48506 * 109.46749 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47222 * 119.99602 * 19 17 15 22 22 H 1.48494 * 109.47027 * 240.00074 * 19 17 15 23 23 H 1.08994 * 109.47107 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47014 * 300.00611 * 1 2 3 25 25 H 1.09000 * 109.46665 * 60.00695 * 1 2 3 26 26 H 1.08985 * 109.47440 * 239.99620 * 2 1 3 27 27 H 1.09000 * 109.46665 * 119.99305 * 2 1 3 28 28 H 1.07996 * 119.97129 * 0.28073 * 5 4 3 29 29 H 1.07996 * 119.70433 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.72973 * 180.02562 * 7 6 5 31 31 H 1.08995 * 109.47235 * 25.02747 * 9 8 7 32 32 H 1.09000 * 109.47167 * 145.02127 * 9 8 7 33 33 H 1.09003 * 109.46946 * 299.99524 * 10 9 8 34 34 H 1.09000 * 109.47323 * 59.99781 * 10 9 8 35 35 H 0.96701 * 117.00248 * 180.02562 * 13 11 10 36 36 H 0.96992 * 119.99964 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3510 1.5251 -0.0005 5 6 4.1995 0.4310 0.0049 6 6 5.5700 0.6174 0.0106 7 6 6.1090 1.8968 0.0101 8 6 5.2949 2.9923 0.0047 9 6 5.8922 4.3759 0.0047 10 6 5.9736 4.8963 1.4412 11 6 6.5703 6.2801 1.4412 12 8 6.8966 6.7972 0.3990 13 8 6.7384 6.9386 2.5986 14 6 3.8972 2.8285 -0.0007 15 6 3.0482 3.9561 -0.0057 16 1 3.3043 4.8275 0.5788 17 6 1.8748 3.9451 -0.7680 18 7 1.7471 3.1017 -1.7604 19 14 0.4907 5.1345 -0.3692 20 1 0.8809 5.9774 0.7895 21 1 0.2288 6.0019 -1.5458 22 1 -0.7377 4.3701 -0.0345 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 3.7909 -0.5686 0.0050 29 1 6.2266 -0.2399 0.0153 30 1 7.1811 2.0262 0.0142 31 1 6.8929 4.3396 -0.4258 32 1 5.2656 5.0421 -0.5882 33 1 4.9728 4.9326 1.8717 34 1 6.6002 4.2300 2.0341 35 1 7.1247 7.8237 2.5482 36 1 0.9336 3.0938 -2.2886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514262391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:14 Heat of formation + Delta-G solvation = -141.010081 kcal Electronic energy + Delta-G solvation = -20106.005937 eV Core-core repulsion = 16940.091896 eV Total energy + Delta-G solvation = -3165.914041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20896 -40.38796 -38.19767 -37.05460 -35.31276 -34.43820 -32.43172 -31.05203 -29.96737 -27.05436 -25.85840 -24.05314 -22.71712 -22.06747 -20.83472 -19.23854 -18.88652 -17.97419 -17.32009 -17.21411 -16.80706 -16.52270 -16.15439 -15.86998 -14.83159 -14.46468 -14.35229 -14.12896 -13.76262 -13.65277 -13.23618 -13.17747 -13.10115 -12.92846 -12.65310 -12.49004 -12.34702 -12.15997 -12.02398 -11.91552 -11.61351 -11.52045 -11.23832 -10.97839 -10.70036 -9.14284 -8.56928 -8.39020 -6.09766 0.97364 1.19885 1.28213 1.41914 1.50498 1.52381 2.26877 2.31774 2.91367 2.99576 3.68065 4.14622 4.17713 4.22307 4.30329 4.38368 4.44323 4.52167 4.64509 4.71306 4.84255 4.85438 5.01581 5.03962 5.05876 5.22847 5.29159 5.37005 5.51882 5.58452 5.69400 5.97499 6.05757 6.21121 6.41228 6.69895 6.83424 7.08228 7.13510 7.46257 8.56640 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.007563 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.274016 B = 3701.320548 C = 4925.570596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.048 3.952 3 O -0.299 6.299 4 C 0.055 3.945 5 C -0.205 4.205 6 C -0.197 4.197 7 C -0.126 4.126 8 C -0.169 4.169 9 C -0.031 4.031 10 C -0.101 4.101 11 C 0.489 3.511 12 O -0.553 6.553 13 O -0.511 6.511 14 C 0.072 3.928 15 C -0.495 4.495 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.803 5.803 19 Si 0.950 3.050 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.271 1.271 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.425 0.575 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -0.926 6.288 6.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 O -0.212 6.212 4 C 0.009 3.991 5 C -0.225 4.225 6 C -0.216 4.216 7 C -0.144 4.144 8 C -0.170 4.170 9 C -0.068 4.068 10 C -0.138 4.138 11 C 0.334 3.666 12 O -0.444 6.444 13 O -0.325 6.325 14 C 0.069 3.931 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.159 4.159 18 N -0.429 5.429 19 Si 0.773 3.227 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.196 1.196 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.139 0.861 35 H 0.286 0.714 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.808 -1.095 5.848 6.218 hybrid contribution -0.456 0.722 -0.301 0.905 sum 1.353 -0.373 5.547 5.722 Atomic orbital electron populations 1.21677 0.92342 1.03295 1.02117 1.22693 0.96401 0.83902 0.99783 1.86157 1.19678 1.26838 1.88571 1.19547 0.82079 0.94209 1.03235 1.21026 0.94961 0.96671 1.09800 1.20549 0.93727 0.96792 1.10519 1.20458 0.98667 0.92232 1.03078 1.19443 0.92163 0.94530 1.10882 1.19831 0.99522 0.93195 0.94278 1.21374 1.03164 0.89106 1.00205 1.23747 0.73739 0.88578 0.80573 1.90685 1.49321 1.69649 1.34715 1.84526 1.76806 1.35985 1.35186 1.17165 0.91701 0.90720 0.93477 1.19283 1.05556 1.00991 1.26603 0.90827 1.26183 1.00005 0.96733 0.92964 1.69800 1.26812 1.33219 1.13044 0.85645 0.79065 0.78912 0.79034 1.18464 1.20183 1.19597 0.88138 0.92480 0.93345 0.94017 0.92833 0.86929 0.86259 0.86320 0.91716 0.93122 0.87943 0.86051 0.71391 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 10.28 71.98 0.74 -3.50 16 2 C 0.05 1.81 5.46 71.98 0.39 2.21 16 3 O -0.30 -14.54 7.05 -89.47 -0.63 -15.17 16 4 C 0.06 2.77 6.17 23.08 0.14 2.91 16 5 C -0.21 -9.12 9.04 22.34 0.20 -8.92 16 6 C -0.20 -8.08 10.04 22.43 0.23 -7.86 16 7 C -0.13 -5.21 9.59 22.00 0.21 -4.99 16 8 C -0.17 -7.67 5.16 -19.67 -0.10 -7.77 16 9 C -0.03 -1.24 4.02 29.85 0.12 -1.12 16 10 C -0.10 -3.35 5.72 29.85 0.17 -3.18 16 11 C 0.49 15.26 8.33 71.24 0.59 15.85 16 12 O -0.55 -20.76 16.74 21.96 0.37 -20.40 16 13 O -0.51 -11.93 13.42 -51.34 -0.69 -12.62 16 14 C 0.07 3.71 5.37 -21.20 -0.11 3.59 16 15 C -0.49 -26.05 7.64 23.40 0.18 -25.87 16 16 H 0.07 3.76 6.48 -2.91 -0.02 3.74 16 17 C 0.06 2.96 4.41 85.25 0.38 3.34 16 18 N -0.80 -42.92 11.25 21.83 0.25 -42.67 16 19 Si 0.95 40.24 29.61 68.60 2.03 42.27 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.56 7.67 -2.39 -0.02 1.54 16 27 H 0.05 1.83 7.66 -2.39 -0.02 1.81 16 28 H 0.11 4.43 6.31 -2.91 -0.02 4.42 16 29 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.12 4.13 8.05 -2.91 -0.02 4.11 16 31 H 0.06 2.44 8.00 -2.39 -0.02 2.42 16 32 H 0.05 2.33 7.21 -2.39 -0.02 2.31 16 33 H 0.10 3.59 7.11 -2.39 -0.02 3.57 16 34 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.42 5.80 9.10 -74.06 -0.67 5.13 16 36 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 Total: -1.00 -64.91 307.12 4.89 -60.03 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.43 Total: 23.88 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.14 Total: -35.32 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.25 Total: -42.67 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.95 Total: -48.19 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -64.91 4.89 -60.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514262391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.983 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds