Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47491 * 2 1 4 4 C 1.35904 * 117.00232 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05219 * 0.02562 * 4 3 2 6 6 C 1.38119 * 119.94231 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.05747 * 0.02562 * 6 5 4 8 8 C 1.38251 * 120.10979 * 359.95935 * 7 6 5 9 9 C 1.50693 * 119.97090 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47486 * 264.99734 * 9 8 7 11 11 O 1.20833 * 119.99747 * 0.02562 * 10 9 8 12 12 O 1.34230 * 120.00262 * 179.72204 * 10 9 8 13 13 C 1.38159 * 120.05250 * 0.28954 * 8 7 6 14 14 C 1.50702 * 120.02469 * 179.72593 * 13 8 7 15 15 C 1.50696 * 109.47104 * 90.00431 * 14 13 8 16 16 H 1.08005 * 120.00458 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99998 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46926 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46726 * 120.00292 * 19 17 15 22 22 H 1.48496 * 109.46840 * 240.00287 * 19 17 15 23 23 H 1.09000 * 109.46747 * 299.99779 * 1 2 3 24 24 H 1.08995 * 109.47385 * 59.99305 * 1 2 3 25 25 H 1.09005 * 109.47794 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46747 * 240.00221 * 2 1 3 27 27 H 1.09003 * 109.47063 * 120.00767 * 2 1 3 28 28 H 1.07994 * 120.02999 * 359.95228 * 5 4 3 29 29 H 1.07998 * 119.97653 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.94776 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.47069 * 144.99937 * 9 8 7 32 32 H 1.09000 * 109.47237 * 25.00442 * 9 8 7 33 33 H 0.96699 * 116.99771 * 180.27188 * 12 10 9 34 34 H 1.09002 * 109.47244 * 210.00432 * 14 13 8 35 35 H 1.08998 * 109.47151 * 330.00433 * 14 13 8 36 36 H 0.96995 * 119.99890 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.1999 0.4256 0.0005 6 6 5.5688 0.6092 0.0005 7 6 6.0963 1.8875 0.0011 8 6 5.2552 2.9848 0.0008 9 6 5.8333 4.3764 0.0008 10 6 5.9113 4.8880 1.4162 11 8 5.5363 4.1935 2.3311 12 8 6.4030 6.1128 1.6610 13 6 3.8852 2.8064 0.0060 14 6 2.9690 4.0030 0.0119 15 6 2.6578 4.4044 -1.4069 16 1 3.0808 3.8484 -2.2306 17 6 1.8323 5.4808 -1.6535 18 7 1.3168 6.1575 -0.6506 19 14 1.4471 5.9788 -3.4123 20 1 2.1459 5.0637 -4.3502 21 1 -0.0179 5.8965 -3.6405 22 1 1.9068 7.3716 -3.6443 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 3.7885 -0.5729 0.0009 29 1 6.2280 -0.2463 0.0001 30 1 7.1669 2.0290 0.0015 31 1 5.1955 5.0349 -0.5888 32 1 6.8329 4.3546 -0.4333 33 1 6.4368 6.3956 2.5851 34 1 2.0436 3.7495 0.5291 35 1 3.4568 4.8316 0.5252 36 1 0.7357 6.9145 -0.8241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514276511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = -119.434687 kcal Electronic energy + Delta-G solvation = -20175.806394 eV Core-core repulsion = 17010.827933 eV Total energy + Delta-G solvation = -3164.978461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11205 -39.31882 -37.18685 -35.60155 -33.58773 -32.16941 -31.66667 -29.97349 -27.64161 -26.73910 -23.54257 -23.17720 -21.74606 -20.80869 -19.52986 -17.67562 -17.18145 -16.35935 -15.95453 -15.87218 -15.55041 -15.19366 -14.92225 -14.36085 -13.69943 -13.07583 -13.01405 -12.61076 -12.42535 -12.33123 -12.07691 -11.78820 -11.51542 -11.42711 -11.18413 -11.00693 -10.98596 -10.79714 -10.42592 -10.33084 -10.25181 -10.07514 -9.47999 -9.34460 -8.37284 -8.03045 -7.35730 -5.98504 -4.02112 1.86449 2.13821 2.72649 3.31392 3.39180 3.43725 3.54523 3.80259 4.39841 4.55011 5.13052 5.21354 5.23127 5.35297 5.41643 5.46486 5.52483 5.64245 5.73192 5.81794 5.89137 6.05071 6.07254 6.20997 6.30173 6.41510 6.74141 6.83984 6.90639 6.97960 7.15464 7.37550 7.65352 7.82809 7.98026 8.14672 8.35308 8.38224 9.02954 9.60690 11.10987 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.010151 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.554614 B = 2757.808486 C = 4555.203868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.294 6.294 4 C 0.124 3.876 5 C -0.209 4.209 6 C -0.110 4.110 7 C -0.144 4.144 8 C -0.053 4.053 9 C -0.072 4.072 10 C 0.485 3.515 11 O -0.510 6.510 12 O -0.520 6.520 13 C -0.046 4.046 14 C 0.057 3.943 15 C -0.504 4.504 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.403 0.597 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -8.223 1.765 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.207 6.207 4 C 0.079 3.921 5 C -0.228 4.228 6 C -0.128 4.128 7 C -0.162 4.162 8 C -0.053 4.053 9 C -0.109 4.109 10 C 0.328 3.672 11 O -0.397 6.397 12 O -0.332 6.332 13 C -0.046 4.046 14 C 0.021 3.979 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.123 0.877 33 H 0.261 0.739 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.496 -8.259 1.643 10.636 hybrid contribution -0.213 0.179 -0.302 0.411 sum 6.283 -8.080 1.340 10.323 Atomic orbital electron populations 1.21733 0.93235 1.01890 1.03895 1.22653 0.95728 0.83347 1.00376 1.86265 1.18934 1.27154 1.88394 1.18779 0.82268 0.93480 0.97586 1.21101 0.94460 0.97397 1.09860 1.20562 0.94112 0.96513 1.01642 1.20736 0.98654 0.92267 1.04590 1.18831 0.92406 0.92845 1.01265 1.20277 1.04041 0.95698 0.90903 1.23463 0.72675 0.78368 0.92727 1.90706 1.44532 1.57515 1.46996 1.84549 1.77625 1.34933 1.36094 1.19866 0.93722 0.94399 0.96634 1.18198 0.93458 0.88621 0.97659 1.21040 1.28949 1.12983 0.91304 0.92539 1.24986 0.95811 0.96439 0.96934 1.69976 1.32656 1.20050 1.30395 0.86543 0.78163 0.78321 0.85073 1.19682 1.21045 1.20986 0.91582 0.91312 0.91139 0.92748 0.92924 0.86470 0.86773 0.86899 0.84564 0.87723 0.73879 0.94699 0.95802 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 37.16 0.38 -1.63 16 2 C 0.05 0.84 5.46 37.16 0.20 1.05 16 3 O -0.29 -6.25 9.19 -19.44 -0.18 -6.43 16 4 C 0.12 2.65 6.66 -39.22 -0.26 2.39 16 5 C -0.21 -3.70 9.04 -39.43 -0.36 -4.06 16 6 C -0.11 -1.80 10.04 -39.61 -0.40 -2.19 16 7 C -0.14 -2.47 9.68 -39.56 -0.38 -2.86 16 8 C -0.05 -1.06 4.37 -104.65 -0.46 -1.52 16 9 C -0.07 -1.29 5.26 -29.04 -0.15 -1.44 16 10 C 0.49 8.85 7.52 36.00 0.27 9.12 16 11 O -0.51 -10.84 16.79 -18.76 -0.31 -11.15 16 12 O -0.52 -7.74 13.42 -39.26 -0.53 -8.27 16 13 C -0.05 -1.05 5.08 -104.48 -0.53 -1.58 16 14 C 0.06 1.53 4.21 -29.04 -0.12 1.41 16 15 C -0.50 -14.09 8.68 -34.44 -0.30 -14.39 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 27 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 28 H 0.12 1.72 6.30 -52.49 -0.33 1.39 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.14 2.70 6.65 -51.93 -0.35 2.36 16 32 H 0.10 1.44 8.05 -51.93 -0.42 1.03 16 33 H 0.40 4.16 9.10 45.56 0.41 4.57 16 34 H 0.03 1.03 7.54 -51.93 -0.39 0.64 16 35 H 0.02 0.66 6.15 -51.93 -0.32 0.34 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -34.02 310.99 -6.66 -40.68 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.84 Total: 3.85 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.20 Total: -14.12 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.02 Total: -25.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.02 -6.66 -40.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514276511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.757 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds