Wall clock time and date at job start Mon Mar 30 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47491 * 2 1 4 4 C 1.35904 * 117.00232 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05219 * 0.02562 * 4 3 2 6 6 C 1.38119 * 119.94231 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.05747 * 0.02562 * 6 5 4 8 8 C 1.38251 * 120.10979 * 359.95935 * 7 6 5 9 9 C 1.50693 * 119.97090 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47486 * 264.99734 * 9 8 7 11 11 O 1.20833 * 119.99747 * 0.02562 * 10 9 8 12 12 O 1.34230 * 120.00262 * 179.72204 * 10 9 8 13 13 C 1.38159 * 120.05250 * 0.28954 * 8 7 6 14 14 C 1.50702 * 120.02469 * 179.72593 * 13 8 7 15 15 C 1.50696 * 109.47104 * 90.00431 * 14 13 8 16 16 H 1.08005 * 120.00458 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99998 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46926 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46726 * 120.00292 * 19 17 15 22 22 H 1.48496 * 109.46840 * 240.00287 * 19 17 15 23 23 H 1.09000 * 109.46747 * 299.99779 * 1 2 3 24 24 H 1.08995 * 109.47385 * 59.99305 * 1 2 3 25 25 H 1.09005 * 109.47794 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46747 * 240.00221 * 2 1 3 27 27 H 1.09003 * 109.47063 * 120.00767 * 2 1 3 28 28 H 1.07994 * 120.02999 * 359.95228 * 5 4 3 29 29 H 1.07998 * 119.97653 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.94776 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.47069 * 144.99937 * 9 8 7 32 32 H 1.09000 * 109.47237 * 25.00442 * 9 8 7 33 33 H 0.96699 * 116.99771 * 180.27188 * 12 10 9 34 34 H 1.09002 * 109.47244 * 210.00432 * 14 13 8 35 35 H 1.08998 * 109.47151 * 330.00433 * 14 13 8 36 36 H 0.96995 * 119.99890 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.1999 0.4256 0.0005 6 6 5.5688 0.6092 0.0005 7 6 6.0963 1.8875 0.0011 8 6 5.2552 2.9848 0.0008 9 6 5.8333 4.3764 0.0008 10 6 5.9113 4.8880 1.4162 11 8 5.5363 4.1935 2.3311 12 8 6.4030 6.1128 1.6610 13 6 3.8852 2.8064 0.0060 14 6 2.9690 4.0030 0.0119 15 6 2.6578 4.4044 -1.4069 16 1 3.0808 3.8484 -2.2306 17 6 1.8323 5.4808 -1.6535 18 7 1.3168 6.1575 -0.6506 19 14 1.4471 5.9788 -3.4123 20 1 2.1459 5.0637 -4.3502 21 1 -0.0179 5.8965 -3.6405 22 1 1.9068 7.3716 -3.6443 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 3.7885 -0.5729 0.0009 29 1 6.2280 -0.2463 0.0001 30 1 7.1669 2.0290 0.0015 31 1 5.1955 5.0349 -0.5888 32 1 6.8329 4.3546 -0.4333 33 1 6.4368 6.3956 2.5851 34 1 2.0436 3.7495 0.5291 35 1 3.4568 4.8316 0.5252 36 1 0.7357 6.9145 -0.8241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514276511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:50 Heat of formation + Delta-G solvation = -142.043592 kcal Electronic energy + Delta-G solvation = -20176.786790 eV Core-core repulsion = 17010.827933 eV Total energy + Delta-G solvation = -3165.958857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55356 -40.74255 -38.59855 -36.98427 -35.51753 -33.76222 -33.08452 -31.51316 -29.09143 -28.53017 -25.26087 -24.66465 -23.08104 -22.35530 -20.96611 -19.09068 -18.58512 -18.46689 -17.42524 -17.32288 -16.87301 -16.79850 -16.40558 -16.07001 -15.08125 -14.60416 -14.39807 -14.24893 -13.89523 -13.82519 -13.42414 -13.35363 -13.04375 -12.94106 -12.70809 -12.60479 -12.48108 -12.40147 -12.20507 -11.96918 -11.64344 -11.49773 -11.47860 -11.15927 -10.57673 -9.49830 -8.88062 -8.14558 -6.28175 0.44190 0.69896 1.29187 1.39397 1.40186 1.53495 2.25350 2.41770 2.49985 3.05959 3.14768 3.74821 4.00562 4.07904 4.15471 4.23326 4.30934 4.39978 4.45026 4.56519 4.63406 4.74335 4.79157 4.94050 5.02756 5.15960 5.20216 5.25321 5.44555 5.57227 5.63273 5.66886 5.78566 5.90872 6.07046 6.21986 6.74823 6.83761 7.06235 7.39330 8.94181 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.010151 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.554614 B = 2757.808486 C = 4555.203868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.099 3.901 5 C -0.207 4.207 6 C -0.097 4.097 7 C -0.144 4.144 8 C -0.062 4.062 9 C -0.074 4.074 10 C 0.489 3.511 11 O -0.547 6.547 12 O -0.511 6.511 13 C -0.096 4.096 14 C 0.078 3.922 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.273 1.273 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.109 0.891 32 H 0.150 0.850 33 H 0.424 0.576 34 H -0.015 1.015 35 H 0.000 1.000 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 -10.103 0.558 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.055 3.945 5 C -0.225 4.225 6 C -0.114 4.114 7 C -0.162 4.162 8 C -0.062 4.062 9 C -0.110 4.110 10 C 0.333 3.667 11 O -0.437 6.437 12 O -0.325 6.325 13 C -0.097 4.097 14 C 0.041 3.959 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.572 5.572 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.198 1.198 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.167 0.833 29 H 0.179 0.821 30 H 0.170 0.830 31 H 0.127 0.873 32 H 0.168 0.832 33 H 0.285 0.715 34 H 0.003 0.997 35 H 0.018 0.982 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.575 -10.129 0.441 13.279 hybrid contribution -0.812 0.719 0.144 1.094 sum 7.762 -9.411 0.585 12.213 Atomic orbital electron populations 1.21788 0.92219 1.04035 1.02419 1.23023 0.96653 0.81351 1.01989 1.86218 1.19522 1.30673 1.88707 1.19065 0.82879 0.94065 0.98538 1.21461 0.94887 0.97581 1.08620 1.21166 0.94053 0.97757 0.98448 1.21187 1.00255 0.91652 1.03121 1.19108 0.91538 0.94769 1.00790 1.20328 1.05755 0.94388 0.90569 1.23539 0.71846 0.78745 0.92540 1.90689 1.46236 1.58759 1.48049 1.84495 1.76653 1.33274 1.38050 1.19743 0.94773 0.93794 1.01389 1.17756 0.92029 0.89878 0.96202 1.21270 1.28808 1.12921 0.91933 0.92886 1.25901 0.95529 0.96368 1.01468 1.70116 1.33476 1.20689 1.32880 0.85440 0.77894 0.78383 0.79614 1.18674 1.20772 1.19819 0.92889 0.92953 0.87074 0.91023 0.91060 0.83334 0.82129 0.83024 0.87319 0.83210 0.71499 0.99676 0.98152 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 10.28 71.98 0.74 -3.18 16 2 C 0.04 1.34 5.46 71.98 0.39 1.73 16 3 O -0.34 -14.89 9.19 -92.47 -0.85 -15.74 16 4 C 0.10 4.31 6.66 22.51 0.15 4.46 16 5 C -0.21 -6.82 9.04 22.36 0.20 -6.62 16 6 C -0.10 -2.75 10.04 22.25 0.22 -2.53 16 7 C -0.14 -4.48 9.68 22.29 0.22 -4.26 16 8 C -0.06 -2.44 4.37 -19.88 -0.09 -2.53 16 9 C -0.07 -2.60 5.26 29.10 0.15 -2.45 16 10 C 0.49 17.87 7.52 71.23 0.54 18.41 16 11 O -0.55 -23.64 16.79 21.94 0.37 -23.28 16 12 O -0.51 -14.84 13.42 -51.41 -0.69 -15.53 16 13 C -0.10 -4.61 5.08 -19.77 -0.10 -4.71 16 14 C 0.08 4.48 4.21 29.10 0.12 4.60 16 15 C -0.51 -29.93 8.68 25.60 0.22 -29.71 16 16 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 17 C 0.01 0.29 5.46 84.66 0.46 0.76 16 18 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 19 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.07 1.87 7.66 -2.39 -0.02 1.86 16 27 H 0.07 1.84 7.66 -2.39 -0.02 1.83 16 28 H 0.15 3.82 6.30 -2.91 -0.02 3.80 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.11 4.48 6.65 -2.38 -0.02 4.47 16 32 H 0.15 3.76 8.05 -2.39 -0.02 3.74 16 33 H 0.42 8.35 9.10 -74.06 -0.67 7.68 16 34 H -0.02 -0.98 7.54 -2.39 -0.02 -1.00 16 35 H 0.00 0.02 6.15 -2.39 -0.01 0.00 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -79.24 310.99 4.80 -74.44 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.43 Total: 16.53 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.23 Total: -26.01 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.28 Total: -57.50 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -1.17 Total: -54.54 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -79.24 4.80 -74.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514276511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.606 kcal (2) G-P(sol) polarization free energy of solvation -79.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds