Wall clock time and date at job start Mon Mar 30 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.20823 * 120.00322 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99495 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99756 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47267 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00279 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99846 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99764 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47092 * 89.99695 * 17 15 13 19 19 H 1.48493 * 109.47142 * 209.99798 * 17 15 13 20 20 H 1.48504 * 109.47171 * 330.00069 * 17 15 13 21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6 23 23 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 30 30 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 31 31 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 32 32 H 1.08999 * 109.47028 * 300.00132 * 12 11 9 33 33 H 1.09001 * 109.47111 * 60.00304 * 12 11 9 34 34 H 0.97001 * 119.99690 * 180.02562 * 16 15 13 35 35 H 1.08008 * 119.97547 * 179.97438 * 21 7 6 36 36 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3088 2.0485 2.3413 11 8 9.3957 2.3243 1.6689 12 6 9.8034 2.3780 3.0615 13 6 11.2953 2.5754 3.1410 14 1 11.8788 2.6523 2.2355 15 6 11.9154 2.6577 4.3697 16 7 13.2174 2.8295 4.4390 17 14 10.9062 2.5239 5.9360 18 1 10.8229 1.1005 6.3511 19 1 11.5545 3.3161 7.0117 20 1 9.5389 3.0486 5.6902 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0003 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0032 30 1 8.0671 1.2509 -0.5113 31 1 7.8338 3.0155 -0.5117 32 1 9.3004 3.2093 3.5555 33 1 9.5332 1.4446 3.5554 34 1 13.6536 2.8871 5.3034 35 1 5.6690 3.9828 0.0011 36 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526914758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:13 Heat of formation + Delta-G solvation = -109.671861 kcal Electronic energy + Delta-G solvation = -18804.726954 eV Core-core repulsion = 15640.171841 eV Total energy + Delta-G solvation = -3164.555114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38852 -39.57757 -37.77768 -35.66152 -32.88801 -32.71947 -31.48880 -30.96804 -28.76250 -26.99591 -24.27265 -22.83183 -22.16121 -21.36523 -19.98997 -18.42469 -17.33119 -16.54556 -16.33605 -16.28217 -15.79027 -15.50719 -15.16231 -14.48924 -14.14635 -13.74239 -13.57013 -13.55266 -12.96825 -12.76195 -12.73455 -12.17781 -12.00186 -11.82752 -11.70813 -11.63181 -11.16443 -10.95731 -10.91788 -10.84744 -10.10230 -9.76816 -9.71217 -9.41500 -9.03954 -8.71581 -8.17504 -6.23484 -4.25688 1.29516 1.32813 2.83802 2.99328 3.21924 3.28076 3.35171 3.42228 3.92682 4.28014 4.58062 4.59563 4.70978 4.77391 4.80238 4.92164 5.08031 5.13322 5.23301 5.29683 5.44085 5.48762 5.59143 5.61452 5.66634 5.72601 5.97035 6.18432 6.27014 6.45657 6.56535 6.68621 6.80211 7.22207 7.28233 7.48830 8.21041 8.60369 8.84364 9.32773 10.88359 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.037522 B = 0.003377 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.043427 B = 8289.033328 C = 8656.671871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.126 3.874 5 C -0.208 4.208 6 C -0.063 4.063 7 C -0.105 4.105 8 C -0.073 4.073 9 C 0.449 3.551 10 O -0.517 6.517 11 O -0.346 6.346 12 C 0.179 3.821 13 C -0.532 4.532 14 H 0.087 0.913 15 C 0.079 3.921 16 N -0.888 5.888 17 Si 0.871 3.129 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.262 1.262 21 C -0.063 4.063 22 C -0.151 4.151 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.270 0.730 35 H 0.130 0.870 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.941 -4.822 -11.542 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.081 3.919 5 C -0.226 4.226 6 C -0.081 4.081 7 C -0.105 4.105 8 C -0.110 4.110 9 C 0.292 3.708 10 O -0.407 6.407 11 O -0.262 6.262 12 C 0.107 3.893 13 C -0.570 4.570 14 H 0.105 0.895 15 C -0.124 4.124 16 N -0.525 5.525 17 Si 0.697 3.303 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.081 4.081 22 C -0.170 4.170 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.122 -4.687 -11.098 25.189 hybrid contribution -0.295 -0.364 1.134 1.227 sum -22.417 -5.051 -9.964 25.046 Atomic orbital electron populations 1.21774 0.92819 1.02799 1.03495 1.22770 0.95782 0.82143 1.01457 1.86050 1.19248 1.29172 1.88796 1.18977 0.82040 0.94242 0.96597 1.21148 0.94177 0.97911 1.09394 1.20807 0.94360 0.96666 0.96250 1.19266 0.93866 0.93524 1.03837 1.20233 0.92127 1.06176 0.92478 1.23437 0.81965 0.73479 0.91930 1.90623 1.57134 1.45959 1.46972 1.86477 1.24047 1.80998 1.34662 1.21252 0.96785 0.96910 0.74380 1.20810 0.88909 1.51818 0.95458 0.89457 1.24675 0.94934 0.94193 0.98628 1.69850 1.08448 1.48525 1.25706 0.86904 0.81074 0.79100 0.83205 1.19617 1.20436 1.18633 1.20842 0.92123 0.98711 0.96426 1.20351 0.95038 0.94754 1.06833 0.91509 0.91563 0.90421 0.92064 0.91993 0.85598 0.85687 0.87145 0.87065 0.95568 0.96058 0.92038 0.85210 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.69 10.14 -19.41 -0.20 -3.88 16 4 C 0.13 1.59 6.69 -39.21 -0.26 1.33 16 5 C -0.21 -2.47 9.04 -39.43 -0.36 -2.83 16 6 C -0.06 -0.80 9.69 -39.61 -0.38 -1.18 16 7 C -0.10 -1.42 4.38 -104.60 -0.46 -1.87 16 8 C -0.07 -0.99 5.94 -29.03 -0.17 -1.16 16 9 C 0.45 8.80 7.95 36.01 0.29 9.09 16 10 O -0.52 -11.60 15.78 -18.75 -0.30 -11.89 16 11 O -0.35 -7.97 10.20 -39.24 -0.40 -8.37 16 12 C 0.18 4.66 4.29 36.01 0.15 4.82 16 13 C -0.53 -15.55 10.00 -34.44 -0.34 -15.89 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 16 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 17 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 21 C -0.06 -0.81 9.69 -39.61 -0.38 -1.19 16 22 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 27 H 0.06 0.48 7.65 -51.93 -0.40 0.09 16 28 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 30 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 31 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 32 H 0.03 0.69 7.19 -51.93 -0.37 0.32 16 33 H 0.02 0.56 7.56 -51.93 -0.39 0.17 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -33.78 314.68 -6.73 -40.51 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.86 Total: -2.99 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.83 Total: -8.89 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.89 Total: -24.15 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.78 -6.73 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526914758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.159 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds