Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.20823 * 120.00322 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99495 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99756 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47267 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00279 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99846 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99764 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47092 * 89.99695 * 17 15 13 19 19 H 1.48493 * 109.47142 * 209.99798 * 17 15 13 20 20 H 1.48504 * 109.47171 * 330.00069 * 17 15 13 21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6 23 23 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 30 30 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 31 31 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 32 32 H 1.08999 * 109.47028 * 300.00132 * 12 11 9 33 33 H 1.09001 * 109.47111 * 60.00304 * 12 11 9 34 34 H 0.97001 * 119.99690 * 180.02562 * 16 15 13 35 35 H 1.08008 * 119.97547 * 179.97438 * 21 7 6 36 36 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3088 2.0485 2.3413 11 8 9.3957 2.3243 1.6689 12 6 9.8034 2.3780 3.0615 13 6 11.2953 2.5754 3.1410 14 1 11.8788 2.6523 2.2355 15 6 11.9154 2.6577 4.3697 16 7 13.2174 2.8295 4.4390 17 14 10.9062 2.5239 5.9360 18 1 10.8229 1.1005 6.3511 19 1 11.5545 3.3161 7.0117 20 1 9.5389 3.0486 5.6902 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0003 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0032 30 1 8.0671 1.2509 -0.5113 31 1 7.8338 3.0155 -0.5117 32 1 9.3004 3.2093 3.5555 33 1 9.5332 1.4446 3.5554 34 1 13.6536 2.8871 5.3034 35 1 5.6690 3.9828 0.0011 36 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526914758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = -129.864842 kcal Electronic energy + Delta-G solvation = -18805.602588 eV Core-core repulsion = 15640.171841 eV Total energy + Delta-G solvation = -3165.430747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54250 -40.90963 -38.75789 -37.37391 -35.01136 -33.71440 -32.34154 -31.82394 -30.75366 -28.17067 -25.03495 -24.60533 -23.21605 -22.51143 -21.40819 -19.33270 -19.20727 -18.37429 -17.55494 -17.42045 -17.03755 -16.80846 -16.39857 -15.97367 -15.38661 -14.81293 -14.77641 -14.46101 -14.30555 -14.25770 -13.75650 -13.45120 -13.30604 -13.04431 -12.83036 -12.81751 -12.55707 -12.53121 -11.99613 -11.69420 -11.69196 -11.65766 -11.61850 -11.37612 -10.91965 -9.96490 -9.11576 -8.46759 -6.56699 0.32922 0.38898 1.27610 1.29949 1.30755 1.42306 1.99824 2.21126 2.24995 2.83405 2.85045 3.65329 3.79129 3.92527 4.04618 4.05928 4.11042 4.29263 4.34733 4.39484 4.42886 4.50611 4.64569 4.69782 4.72637 4.89068 4.93349 5.06394 5.16176 5.18522 5.26631 5.36072 5.60611 5.61150 5.79983 6.11462 6.44302 6.48545 6.89024 7.07905 8.68735 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.037522 B = 0.003377 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.043427 B = 8289.033328 C = 8656.671871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.119 3.881 5 C -0.212 4.212 6 C -0.072 4.072 7 C -0.125 4.125 8 C -0.060 4.060 9 C 0.447 3.553 10 O -0.546 6.546 11 O -0.359 6.359 12 C 0.189 3.811 13 C -0.552 4.552 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.927 5.927 17 Si 0.941 3.059 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.259 1.259 21 C -0.071 4.071 22 C -0.165 4.165 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.277 0.723 35 H 0.142 0.858 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.769 -5.584 -11.500 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.073 3.927 5 C -0.230 4.230 6 C -0.090 4.090 7 C -0.125 4.125 8 C -0.097 4.097 9 C 0.292 3.708 10 O -0.437 6.437 11 O -0.275 6.275 12 C 0.115 3.885 13 C -0.589 4.589 14 H 0.069 0.931 15 C -0.172 4.172 16 N -0.565 5.565 17 Si 0.763 3.237 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.183 1.183 21 C -0.089 4.089 22 C -0.183 4.183 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.961 -5.455 -11.083 26.958 hybrid contribution 0.215 -0.150 1.020 1.053 sum -23.746 -5.606 -10.063 26.392 Atomic orbital electron populations 1.21805 0.91365 1.04195 1.03201 1.23075 0.96995 0.80819 1.02225 1.86047 1.18703 1.31309 1.88589 1.19192 0.82710 0.94545 0.96206 1.21405 0.93931 0.98883 1.08818 1.21082 0.95048 0.96952 0.95916 1.19371 0.93699 0.94164 1.05259 1.20369 0.92296 1.08652 0.88356 1.24628 0.80222 0.71766 0.94152 1.90603 1.57306 1.47268 1.48553 1.86482 1.26586 1.81766 1.32670 1.20854 0.94668 0.96579 0.76351 1.20977 0.90623 1.52656 0.94642 0.93121 1.25580 0.96079 0.93308 1.02249 1.69962 1.10239 1.49064 1.27215 0.85816 0.79324 0.79913 0.78672 1.18256 1.18862 1.18276 1.21074 0.92362 0.99312 0.96136 1.20590 0.95287 0.95455 1.06994 0.92087 0.91568 0.88169 0.90774 0.91670 0.83464 0.84341 0.84468 0.84463 0.95909 0.95965 0.91319 0.83981 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.04 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.26 10.14 -92.39 -0.94 -8.19 16 4 C 0.12 2.83 6.69 22.51 0.15 2.98 16 5 C -0.21 -4.67 9.04 22.37 0.20 -4.47 16 6 C -0.07 -1.70 9.69 22.25 0.22 -1.49 16 7 C -0.12 -3.16 4.38 -19.85 -0.09 -3.24 16 8 C -0.06 -1.50 5.94 29.10 0.17 -1.33 16 9 C 0.45 17.05 7.95 71.24 0.57 17.62 16 10 O -0.55 -24.06 15.78 21.97 0.35 -23.71 16 11 O -0.36 -16.47 10.20 -51.36 -0.52 -16.99 16 12 C 0.19 9.83 4.29 71.24 0.31 10.13 16 13 C -0.55 -32.87 10.00 25.60 0.26 -32.62 16 14 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 15 C 0.03 1.64 5.47 84.66 0.46 2.11 16 16 N -0.93 -56.61 13.96 21.45 0.30 -56.31 16 17 Si 0.94 43.98 27.47 68.60 1.88 45.87 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 21 C -0.07 -1.72 9.69 22.25 0.22 -1.51 16 22 C -0.16 -3.94 9.99 22.37 0.22 -3.71 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.87 7.68 -2.39 -0.02 0.85 16 27 H 0.07 0.89 7.65 -2.39 -0.02 0.88 16 28 H 0.15 2.46 6.30 -2.91 -0.02 2.44 16 29 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 30 H 0.14 2.72 8.08 -2.39 -0.02 2.70 16 31 H 0.14 2.74 8.08 -2.39 -0.02 2.72 16 32 H 0.02 1.20 7.19 -2.39 -0.02 1.19 16 33 H 0.02 1.15 7.56 -2.39 -0.02 1.14 16 34 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -73.12 314.68 5.90 -67.22 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.01 Total: 7.43 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.82 Total: -15.31 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -1.11 Total: -48.90 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal Total: -73.12 5.90 -67.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526914758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.647 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds