Wall clock time and date at job start Mon Mar 30 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 O 1.42893 * 109.47152 * 119.99616 * 2 1 3 5 5 C 1.35698 * 116.99993 * 84.90084 * 4 2 1 6 6 C 1.39015 * 119.91042 * 174.27570 * 5 4 2 7 7 C 1.37681 * 120.09352 * 179.72449 * 6 5 4 8 8 C 1.39792 * 119.90680 * 0.54479 * 7 6 5 9 9 C 1.47460 * 120.09113 * 179.70304 * 8 7 6 10 10 O 1.21511 * 119.99776 * 180.02562 * 9 8 7 11 11 O 1.34748 * 120.00587 * 0.02562 * 9 8 7 12 12 C 1.45200 * 117.00590 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47319 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99480 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99812 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47376 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47489 * 120.00144 * 17 15 13 20 20 H 1.48506 * 109.47013 * 240.00085 * 17 15 13 21 21 C 1.39788 * 119.81342 * 359.72423 * 8 7 6 22 22 C 1.37681 * 119.90723 * 0.02562 * 21 8 7 23 23 H 1.08996 * 109.47145 * 300.00109 * 1 2 3 24 24 H 1.08998 * 109.46649 * 60.00325 * 1 2 3 25 25 H 1.09004 * 109.46554 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47145 * 239.99891 * 2 1 3 27 27 H 1.08999 * 109.46988 * 59.99690 * 3 2 1 28 28 H 1.08993 * 109.47089 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46928 * 299.99722 * 3 2 1 30 30 H 1.07998 * 119.94710 * 359.97438 * 6 5 4 31 31 H 1.07999 * 120.04294 * 180.24574 * 7 6 5 32 32 H 1.08995 * 109.46774 * 299.99983 * 12 11 9 33 33 H 1.09003 * 109.46967 * 59.99600 * 12 11 9 34 34 H 0.97004 * 119.99823 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.05005 * 179.97438 * 21 8 7 36 36 H 1.08009 * 119.95480 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1104 -2.0248 1.0987 6 6 2.6782 -2.7303 2.1535 7 6 2.7805 -4.1019 2.0909 8 6 2.3228 -4.7840 0.9597 9 6 2.4363 -6.2524 0.8856 10 8 2.0384 -6.8436 -0.0986 11 8 2.9813 -6.9386 1.9092 12 6 3.0603 -8.3816 1.7677 13 6 3.6938 -8.9733 3.0004 14 1 4.0054 -8.3294 3.8095 15 6 3.8745 -10.3368 3.0957 16 7 3.4936 -11.1211 2.1111 17 14 4.6590 -11.0704 4.6240 18 1 4.9951 -9.9834 5.5783 19 1 3.7083 -12.0150 5.2637 20 1 5.8980 -11.7960 4.2447 21 6 1.7577 -4.0702 -0.1010 22 6 1.6545 -2.6992 -0.0281 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.0358 -2.2020 3.0249 31 1 3.2180 -4.6495 2.9124 32 1 2.0574 -8.7897 1.6425 33 1 3.6647 -8.6285 0.8948 34 1 3.6211 -12.0804 2.1780 35 1 1.4033 -4.5933 -0.9769 36 1 1.2184 -2.1469 -0.8475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526918138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:04 Heat of formation + Delta-G solvation = -112.552888 kcal Electronic energy + Delta-G solvation = -18909.645434 eV Core-core repulsion = 15744.965389 eV Total energy + Delta-G solvation = -3164.680044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54330 -39.37282 -37.45844 -35.45827 -33.55530 -32.86539 -31.09310 -30.19241 -27.81405 -27.56362 -24.21736 -23.45991 -22.35709 -21.25195 -20.08831 -18.54653 -17.39511 -16.53390 -15.88856 -15.80797 -15.64370 -15.27923 -14.86386 -14.55824 -14.11440 -13.88063 -13.45538 -13.14167 -12.87933 -12.70131 -12.57716 -12.35583 -12.27836 -11.86847 -11.57828 -11.39578 -11.03796 -11.01376 -10.92646 -10.76339 -10.29085 -9.73426 -9.65159 -9.30292 -9.09847 -8.51781 -8.28686 -6.20671 -4.25832 0.94608 1.32418 2.89922 3.04868 3.24916 3.30691 3.35902 3.66717 3.97070 4.34661 4.38203 4.51140 4.65227 4.75583 4.81465 5.12433 5.14910 5.15659 5.29566 5.33926 5.35107 5.39160 5.56872 5.66358 5.71250 5.79348 5.97624 6.17776 6.27817 6.49034 6.63248 6.91312 7.23212 7.25026 7.48241 7.82099 8.03859 8.61987 8.87854 9.38739 10.90186 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.047875 B = 0.003301 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.712426 B = 8481.287130 C = 8931.602794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.308 6.308 5 C 0.155 3.845 6 C -0.168 4.168 7 C -0.021 4.021 8 C -0.153 4.153 9 C 0.497 3.503 10 O -0.523 6.523 11 O -0.354 6.354 12 C 0.205 3.795 13 C -0.527 4.527 14 H 0.072 0.928 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.019 4.019 22 C -0.227 4.227 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.139 0.861 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 23.355 -3.675 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.018 3.982 3 C -0.206 4.206 4 O -0.222 6.222 5 C 0.109 3.891 6 C -0.186 4.186 7 C -0.039 4.039 8 C -0.154 4.154 9 C 0.342 3.658 10 O -0.415 6.415 11 O -0.270 6.270 12 C 0.134 3.866 13 C -0.565 4.565 14 H 0.090 0.910 15 C -0.143 4.143 16 N -0.529 5.529 17 Si 0.741 3.259 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.037 4.037 22 C -0.245 4.245 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.010 23.080 -3.832 23.737 hybrid contribution 0.197 -0.732 0.335 0.829 sum -3.813 22.348 -3.497 22.939 Atomic orbital electron populations 1.22406 0.94898 1.03433 1.03198 1.22496 0.94504 0.93741 0.87478 1.21856 1.02212 0.93420 1.03076 1.86082 1.80638 1.16515 1.38934 1.19283 0.93211 0.82422 0.94148 1.20417 1.05444 0.93528 0.99232 1.21418 0.92836 0.92919 0.96742 1.19311 1.07771 0.90990 0.97326 1.20950 0.75154 0.88108 0.81588 1.90774 1.46689 1.71143 1.32876 1.86490 1.71702 1.26887 1.41899 1.20956 0.98072 0.68894 0.98690 1.21038 1.41021 0.92008 1.02448 0.90953 1.24967 0.95563 0.96434 0.97376 1.69993 1.46410 1.04782 1.31748 0.86183 0.78803 0.79045 0.81877 1.19324 1.20675 1.20679 1.21062 0.92637 0.92826 0.97202 1.21169 1.08978 0.95013 0.99367 0.91349 0.90937 0.91530 0.90588 0.91421 0.91558 0.90482 0.84552 0.83300 0.95243 0.95247 0.92345 0.84349 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.17 37.16 0.34 -0.91 16 2 C 0.07 0.58 2.84 -26.73 -0.08 0.50 16 3 C -0.15 -0.88 9.56 37.16 0.36 -0.53 16 4 O -0.31 -3.37 9.79 -18.80 -0.18 -3.55 16 5 C 0.16 1.90 6.61 -39.01 -0.26 1.64 16 6 C -0.17 -2.13 9.97 -39.50 -0.39 -2.53 16 7 C -0.02 -0.31 9.61 -39.20 -0.38 -0.69 16 8 C -0.15 -2.62 5.87 -104.98 -0.62 -3.24 16 9 C 0.50 10.96 7.89 34.49 0.27 11.23 16 10 O -0.52 -12.80 16.13 -19.28 -0.31 -13.11 16 11 O -0.35 -8.67 9.45 -40.62 -0.38 -9.05 16 12 C 0.20 5.78 5.23 36.01 0.19 5.97 16 13 C -0.53 -15.24 9.44 -34.44 -0.33 -15.57 16 14 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.02 -0.28 9.58 -39.21 -0.38 -0.65 16 22 C -0.23 -2.71 8.21 -39.50 -0.32 -3.03 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.52 6.90 -51.93 -0.36 0.16 16 26 H 0.08 0.56 6.30 -51.93 -0.33 0.23 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.15 2.18 7.60 -52.49 -0.40 1.78 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.14 1.96 7.64 -52.49 -0.40 1.56 16 36 H 0.13 1.24 5.40 -52.48 -0.28 0.96 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -32.61 313.96 -6.81 -39.42 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.70 Total: -2.67 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.69 Total: -6.21 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.88 Total: -25.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.61 -6.81 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.130 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds