Wall clock time and date at job start Mon Mar 30 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 O 1.42893 * 109.47152 * 119.99616 * 2 1 3 5 5 C 1.35698 * 116.99993 * 84.90084 * 4 2 1 6 6 C 1.39015 * 119.91042 * 174.27570 * 5 4 2 7 7 C 1.37681 * 120.09352 * 179.72449 * 6 5 4 8 8 C 1.39792 * 119.90680 * 0.54479 * 7 6 5 9 9 C 1.47460 * 120.09113 * 179.70304 * 8 7 6 10 10 O 1.21511 * 119.99776 * 180.02562 * 9 8 7 11 11 O 1.34748 * 120.00587 * 0.02562 * 9 8 7 12 12 C 1.45200 * 117.00590 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47319 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99480 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99812 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47376 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47489 * 120.00144 * 17 15 13 20 20 H 1.48506 * 109.47013 * 240.00085 * 17 15 13 21 21 C 1.39788 * 119.81342 * 359.72423 * 8 7 6 22 22 C 1.37681 * 119.90723 * 0.02562 * 21 8 7 23 23 H 1.08996 * 109.47145 * 300.00109 * 1 2 3 24 24 H 1.08998 * 109.46649 * 60.00325 * 1 2 3 25 25 H 1.09004 * 109.46554 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47145 * 239.99891 * 2 1 3 27 27 H 1.08999 * 109.46988 * 59.99690 * 3 2 1 28 28 H 1.08993 * 109.47089 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46928 * 299.99722 * 3 2 1 30 30 H 1.07998 * 119.94710 * 359.97438 * 6 5 4 31 31 H 1.07999 * 120.04294 * 180.24574 * 7 6 5 32 32 H 1.08995 * 109.46774 * 299.99983 * 12 11 9 33 33 H 1.09003 * 109.46967 * 59.99600 * 12 11 9 34 34 H 0.97004 * 119.99823 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.05005 * 179.97438 * 21 8 7 36 36 H 1.08009 * 119.95480 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1104 -2.0248 1.0987 6 6 2.6782 -2.7303 2.1535 7 6 2.7805 -4.1019 2.0909 8 6 2.3228 -4.7840 0.9597 9 6 2.4363 -6.2524 0.8856 10 8 2.0384 -6.8436 -0.0986 11 8 2.9813 -6.9386 1.9092 12 6 3.0603 -8.3816 1.7677 13 6 3.6938 -8.9733 3.0004 14 1 4.0054 -8.3294 3.8095 15 6 3.8745 -10.3368 3.0957 16 7 3.4936 -11.1211 2.1111 17 14 4.6590 -11.0704 4.6240 18 1 4.9951 -9.9834 5.5783 19 1 3.7083 -12.0150 5.2637 20 1 5.8980 -11.7960 4.2447 21 6 1.7577 -4.0702 -0.1010 22 6 1.6545 -2.6992 -0.0281 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.0358 -2.2020 3.0249 31 1 3.2180 -4.6495 2.9124 32 1 2.0574 -8.7897 1.6425 33 1 3.6647 -8.6285 0.8948 34 1 3.6211 -12.0804 2.1780 35 1 1.4033 -4.5933 -0.9769 36 1 1.2184 -2.1469 -0.8475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526918138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:04 Heat of formation + Delta-G solvation = -131.669320 kcal Electronic energy + Delta-G solvation = -18910.474384 eV Core-core repulsion = 15744.965389 eV Total energy + Delta-G solvation = -3165.508995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67614 -40.94386 -38.61009 -37.37984 -35.06676 -34.24329 -32.19455 -31.42708 -29.83684 -28.15309 -25.80195 -24.67060 -23.98910 -22.23453 -21.50843 -19.56359 -19.04213 -18.40087 -17.74149 -17.24499 -16.83415 -16.49679 -16.42775 -15.83322 -15.14123 -14.90989 -14.60463 -14.50973 -14.27475 -13.90576 -13.64870 -13.50945 -13.15215 -13.09561 -13.05649 -12.85010 -12.75702 -12.22207 -12.15825 -11.76759 -11.74599 -11.63409 -11.58354 -11.40607 -10.71779 -10.17476 -9.38636 -8.40088 -6.57052 -0.31171 0.25563 1.40417 1.43380 1.52180 1.57681 1.90988 2.10298 2.38707 2.70026 2.94407 3.64838 3.72681 3.85317 3.87663 3.99595 4.12659 4.17241 4.30884 4.48363 4.62775 4.72484 4.82552 4.85572 4.88372 4.90557 4.92545 5.08394 5.12635 5.25989 5.31438 5.32377 5.38315 5.55870 5.66325 5.89938 6.33316 6.52797 6.83790 7.15353 8.72959 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.047875 B = 0.003301 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.712426 B = 8481.287130 C = 8931.602794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.062 3.938 3 C -0.146 4.146 4 O -0.312 6.312 5 C 0.170 3.830 6 C -0.165 4.165 7 C -0.021 4.021 8 C -0.184 4.184 9 C 0.492 3.508 10 O -0.558 6.558 11 O -0.356 6.356 12 C 0.219 3.781 13 C -0.554 4.554 14 H 0.080 0.920 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.998 3.002 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.018 4.018 22 C -0.215 4.215 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.000 1.000 33 H 0.000 1.000 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 25.831 -2.791 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.007 3.993 3 C -0.203 4.203 4 O -0.225 6.225 5 C 0.123 3.877 6 C -0.183 4.183 7 C -0.039 4.039 8 C -0.185 4.185 9 C 0.340 3.660 10 O -0.452 6.452 11 O -0.272 6.272 12 C 0.147 3.853 13 C -0.591 4.591 14 H 0.098 0.902 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.819 3.181 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.037 4.037 22 C -0.233 4.233 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.782 25.602 -2.959 26.049 hybrid contribution 0.050 -1.268 -0.044 1.270 sum -3.731 24.334 -3.003 24.801 Atomic orbital electron populations 1.22415 0.94013 1.03111 1.04280 1.22883 0.95289 0.94555 0.86603 1.21890 1.02059 0.92181 1.04191 1.86113 1.80231 1.15439 1.40731 1.19398 0.91402 0.83312 0.93586 1.20597 1.04944 0.92500 1.00284 1.21386 0.92752 0.93950 0.95837 1.19127 1.11798 0.87684 0.99927 1.21904 0.73676 0.90040 0.80336 1.90737 1.48303 1.72270 1.33872 1.86488 1.72637 1.24906 1.43202 1.20500 0.95784 0.71165 0.97889 1.21365 1.42032 0.92983 1.02732 0.90210 1.26145 0.95502 0.96547 1.01214 1.70125 1.47068 1.05511 1.34199 0.84930 0.77874 0.78283 0.77034 1.17906 1.19621 1.19617 1.21120 0.92275 0.93914 0.96369 1.21397 1.07973 0.93729 1.00203 0.91574 0.88682 0.92510 0.89664 0.91501 0.91850 0.88219 0.82178 0.83657 0.98168 0.98162 0.91674 0.84488 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.17 71.99 0.66 -1.23 16 2 C 0.06 0.76 2.84 30.60 0.09 0.84 16 3 C -0.15 -1.25 9.56 71.98 0.69 -0.56 16 4 O -0.31 -5.83 9.79 -90.18 -0.88 -6.72 16 5 C 0.17 3.72 6.61 22.64 0.15 3.87 16 6 C -0.16 -3.87 9.97 22.32 0.22 -3.65 16 7 C -0.02 -0.62 9.61 22.51 0.22 -0.40 16 8 C -0.18 -6.46 5.87 -20.10 -0.12 -6.58 16 9 C 0.49 22.94 7.89 70.25 0.55 23.50 16 10 O -0.56 -29.06 16.13 19.80 0.32 -28.74 16 11 O -0.36 -18.43 9.45 -56.58 -0.53 -18.96 16 12 C 0.22 13.10 5.23 71.24 0.37 13.47 16 13 C -0.55 -32.94 9.44 25.60 0.24 -32.70 16 14 H 0.08 4.51 7.81 -2.91 -0.02 4.49 16 15 C 0.00 0.29 5.46 84.65 0.46 0.75 16 16 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 17 Si 1.00 43.75 29.54 68.60 2.03 45.78 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 C -0.02 -0.53 9.58 22.51 0.22 -0.31 16 22 C -0.21 -4.64 8.21 22.32 0.18 -4.45 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.72 6.90 -2.38 -0.02 0.70 16 26 H 0.09 0.92 6.30 -2.39 -0.02 0.90 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.15 4.31 7.60 -2.91 -0.02 4.29 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.14 3.92 7.64 -2.91 -0.02 3.90 16 36 H 0.17 2.49 5.40 -2.91 -0.02 2.48 16 Total: -1.00 -73.19 313.96 6.23 -66.97 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.08 Total: 5.94 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 3.94 Total: -7.46 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.28 Total: -56.80 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -1.10 Total: -54.42 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -73.19 6.23 -66.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.700 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds