Wall clock time and date at job start Mon Mar 30 2020 06:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38258 * 119.94550 * 269.73128 * 3 2 1 5 5 C 1.38151 * 120.05669 * 179.72543 * 4 3 2 6 6 C 1.38729 * 119.94151 * 0.56475 * 5 4 3 7 7 O 1.35900 * 120.05492 * 179.68658 * 6 5 4 8 8 C 1.42897 * 117.00064 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.47183 * 180.02562 * 8 7 6 10 10 O 1.20826 * 119.99870 * 0.02562 * 9 8 7 11 11 O 1.34229 * 120.00015 * 179.97438 * 9 8 7 12 12 C 1.45195 * 116.99793 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47158 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99741 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00239 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00306 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99976 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47175 * 90.00055 * 17 15 13 19 19 H 1.48500 * 109.47221 * 209.99849 * 17 15 13 20 20 H 1.48494 * 109.47363 * 330.00331 * 17 15 13 21 21 C 1.38729 * 119.88774 * 359.70595 * 6 5 4 22 22 C 1.38139 * 119.94678 * 0.02562 * 21 6 5 23 23 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 28 28 H 1.08004 * 119.97567 * 359.97145 * 4 3 2 29 29 H 1.08005 * 120.02705 * 180.24783 * 5 4 3 30 30 H 1.09005 * 109.47110 * 300.00151 * 8 7 6 31 31 H 1.09001 * 109.47327 * 60.00020 * 8 7 6 32 32 H 1.08997 * 109.47631 * 300.00532 * 12 11 9 33 33 H 1.09000 * 109.47219 * 60.00964 * 12 11 9 34 34 H 0.97000 * 120.00664 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.02589 * 179.97438 * 21 6 5 36 36 H 1.08007 * 119.97265 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2678 2.0695 -1.1980 5 6 2.7230 3.3739 -1.2007 6 6 2.9550 4.0288 0.0001 7 8 3.4089 5.3098 0.0001 8 6 3.6250 5.9215 -1.2731 9 6 4.1246 7.3295 -1.0757 10 8 4.2801 7.7643 0.0409 11 8 4.3978 8.1002 -2.1402 12 6 4.8746 9.4457 -1.8748 13 6 5.1258 10.1562 -3.1799 14 1 4.9447 9.6475 -4.1152 15 6 5.5868 11.4556 -3.1799 16 7 5.8064 12.0754 -4.3188 17 14 5.8993 12.3357 -1.5621 18 1 7.3016 12.1008 -1.1337 19 1 5.6734 13.7927 -1.7395 20 1 4.9715 11.8133 -0.5271 21 6 2.7234 3.3737 1.2008 22 6 2.2630 2.0713 1.1981 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.0919 1.5576 -2.1326 29 1 2.9029 3.8816 -2.1369 30 1 4.3658 5.3483 -1.8306 31 1 2.6880 5.9428 -1.8298 32 1 4.1238 9.9912 -1.3032 33 1 5.8015 9.3966 -1.3033 34 1 6.1304 12.9897 -4.3188 35 1 2.9037 3.8813 2.1369 36 1 2.0829 1.5607 2.1327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526918549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:04 Heat of formation + Delta-G solvation = -107.954281 kcal Electronic energy + Delta-G solvation = -18599.758342 eV Core-core repulsion = 15435.277708 eV Total energy + Delta-G solvation = -3164.480634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53480 -39.59066 -37.93287 -35.79091 -33.81166 -32.86873 -31.30470 -29.90848 -28.79303 -27.74481 -23.90287 -23.31380 -22.37540 -21.10101 -20.31437 -18.51404 -17.45704 -16.60824 -16.47004 -16.38727 -15.75880 -15.38478 -15.12283 -14.66571 -14.33329 -14.01113 -13.71261 -13.48338 -13.13361 -12.92130 -12.65661 -12.54396 -12.08412 -11.94482 -11.43682 -11.27897 -11.25507 -11.06503 -10.97655 -10.95983 -10.16252 -9.89065 -9.81414 -9.48989 -9.19679 -8.76560 -8.24934 -6.28103 -4.31403 1.14576 1.22086 2.45333 2.60194 3.19594 3.26625 3.32187 3.54603 3.79284 4.23929 4.52999 4.55121 4.66683 4.84151 4.93403 4.99981 5.03851 5.06669 5.15270 5.19364 5.27994 5.32533 5.49638 5.58995 5.66361 5.83963 5.89494 6.09794 6.17127 6.33476 6.42093 6.57015 6.71399 7.06882 7.20954 7.37291 8.09300 8.45679 8.77984 9.27052 10.83472 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.056867 B = 0.002984 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.255849 B = 9381.528119 C = 9760.010613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.076 4.076 5 C -0.207 4.207 6 C 0.130 3.870 7 O -0.294 6.294 8 C 0.068 3.932 9 C 0.454 3.546 10 O -0.501 6.501 11 O -0.340 6.340 12 C 0.180 3.820 13 C -0.535 4.535 14 H 0.088 0.912 15 C 0.080 3.920 16 N -0.886 5.886 17 Si 0.871 3.129 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.146 4.146 22 C -0.079 4.079 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.030 0.970 33 H 0.025 0.975 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -23.064 7.943 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.226 4.226 6 C 0.084 3.916 7 O -0.207 6.207 8 C -0.008 4.008 9 C 0.295 3.705 10 O -0.390 6.390 11 O -0.256 6.256 12 C 0.109 3.891 13 C -0.572 4.572 14 H 0.106 0.894 15 C -0.123 4.123 16 N -0.523 5.523 17 Si 0.697 3.303 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.165 4.165 22 C -0.097 4.097 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.488 -22.557 8.323 25.498 hybrid contribution 0.273 0.719 0.570 0.958 sum -8.215 -21.838 8.893 24.969 Atomic orbital electron populations 1.21769 0.94930 1.01527 1.02287 1.20460 0.96013 0.92546 1.02663 1.19804 1.02784 0.96861 0.93084 1.20814 0.97224 0.93692 0.97722 1.21335 1.07102 0.96921 0.97201 1.19050 0.94694 0.83369 0.94442 1.86103 1.80466 1.24440 1.29677 1.21946 1.03291 0.90383 0.85227 1.22713 0.75992 0.87707 0.84124 1.90654 1.48297 1.74117 1.25895 1.86443 1.75374 1.28820 1.34958 1.21361 0.94433 0.74194 0.99155 1.20767 1.46413 0.98095 0.91962 0.89363 1.24658 0.94374 0.96520 0.96783 1.69840 1.44316 1.12812 1.25320 0.86905 0.79808 0.79586 0.84005 1.19515 1.20347 1.18594 1.20447 1.04521 0.95048 0.96451 1.20816 0.97629 0.93433 0.97783 0.92556 0.92562 0.92565 0.91210 0.91206 0.85769 0.85001 0.87824 0.87823 0.95241 0.95687 0.91931 0.84984 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.08 -0.53 6.06 -27.89 -0.17 -0.69 16 3 C -0.13 -1.12 5.13 -104.60 -0.54 -1.66 16 4 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 5 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 6 C 0.13 1.66 6.69 -39.22 -0.26 1.40 16 7 O -0.29 -4.52 9.67 -39.38 -0.38 -4.90 16 8 C 0.07 0.96 5.33 36.01 0.19 1.15 16 9 C 0.45 8.97 8.03 36.01 0.29 9.26 16 10 O -0.50 -11.51 16.25 -25.48 -0.41 -11.92 16 11 O -0.34 -7.65 10.20 -39.25 -0.40 -8.06 16 12 C 0.18 4.61 4.29 36.01 0.15 4.76 16 13 C -0.53 -15.34 10.00 -34.44 -0.34 -15.69 16 14 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 15 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 16 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 17 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 21 C -0.15 -1.67 9.99 -39.44 -0.39 -2.07 16 22 C -0.08 -0.74 9.69 -39.61 -0.38 -1.12 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 30 H 0.10 1.20 7.66 -51.93 -0.40 0.80 16 31 H 0.10 1.20 7.66 -51.93 -0.40 0.80 16 32 H 0.03 0.76 7.19 -51.93 -0.37 0.39 16 33 H 0.03 0.64 7.56 -51.93 -0.39 0.25 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -32.72 315.12 -7.13 -39.85 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.86 Total: -3.89 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.92 Total: -6.67 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.66 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.20 Total: -24.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.72 -7.13 -39.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.105 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds