Wall clock time and date at job start Mon Mar 30 2020 06:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38258 * 119.94550 * 269.73128 * 3 2 1 5 5 C 1.38151 * 120.05669 * 179.72543 * 4 3 2 6 6 C 1.38729 * 119.94151 * 0.56475 * 5 4 3 7 7 O 1.35900 * 120.05492 * 179.68658 * 6 5 4 8 8 C 1.42897 * 117.00064 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.47183 * 180.02562 * 8 7 6 10 10 O 1.20826 * 119.99870 * 0.02562 * 9 8 7 11 11 O 1.34229 * 120.00015 * 179.97438 * 9 8 7 12 12 C 1.45195 * 116.99793 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47158 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99741 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00239 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00306 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99976 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47175 * 90.00055 * 17 15 13 19 19 H 1.48500 * 109.47221 * 209.99849 * 17 15 13 20 20 H 1.48494 * 109.47363 * 330.00331 * 17 15 13 21 21 C 1.38729 * 119.88774 * 359.70595 * 6 5 4 22 22 C 1.38139 * 119.94678 * 0.02562 * 21 6 5 23 23 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 28 28 H 1.08004 * 119.97567 * 359.97145 * 4 3 2 29 29 H 1.08005 * 120.02705 * 180.24783 * 5 4 3 30 30 H 1.09005 * 109.47110 * 300.00151 * 8 7 6 31 31 H 1.09001 * 109.47327 * 60.00020 * 8 7 6 32 32 H 1.08997 * 109.47631 * 300.00532 * 12 11 9 33 33 H 1.09000 * 109.47219 * 60.00964 * 12 11 9 34 34 H 0.97000 * 120.00664 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.02589 * 179.97438 * 21 6 5 36 36 H 1.08007 * 119.97265 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2678 2.0695 -1.1980 5 6 2.7230 3.3739 -1.2007 6 6 2.9550 4.0288 0.0001 7 8 3.4089 5.3098 0.0001 8 6 3.6250 5.9215 -1.2731 9 6 4.1246 7.3295 -1.0757 10 8 4.2801 7.7643 0.0409 11 8 4.3978 8.1002 -2.1402 12 6 4.8746 9.4457 -1.8748 13 6 5.1258 10.1562 -3.1799 14 1 4.9447 9.6475 -4.1152 15 6 5.5868 11.4556 -3.1799 16 7 5.8064 12.0754 -4.3188 17 14 5.8993 12.3357 -1.5621 18 1 7.3016 12.1008 -1.1337 19 1 5.6734 13.7927 -1.7395 20 1 4.9715 11.8133 -0.5271 21 6 2.7234 3.3737 1.2008 22 6 2.2630 2.0713 1.1981 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.0919 1.5576 -2.1326 29 1 2.9029 3.8816 -2.1369 30 1 4.3658 5.3483 -1.8306 31 1 2.6880 5.9428 -1.8298 32 1 4.1238 9.9912 -1.3032 33 1 5.8015 9.3966 -1.3033 34 1 6.1304 12.9897 -4.3188 35 1 2.9037 3.8813 2.1369 36 1 2.0829 1.5607 2.1327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526918549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:04 Heat of formation + Delta-G solvation = -126.604872 kcal Electronic energy + Delta-G solvation = -18600.567092 eV Core-core repulsion = 15435.277708 eV Total energy + Delta-G solvation = -3165.289384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.74618 -40.91631 -38.88580 -37.53199 -35.04728 -34.46060 -32.10651 -31.36227 -30.14150 -28.92553 -24.90171 -24.41737 -23.75806 -22.17389 -21.56030 -19.61735 -19.25510 -18.15003 -17.99213 -17.90247 -16.72166 -16.55609 -16.44639 -16.01163 -15.37842 -14.91714 -14.71332 -14.62361 -14.30061 -14.19996 -13.98698 -13.58244 -13.36553 -13.34408 -12.96110 -12.85762 -12.09369 -11.99685 -11.91370 -11.83670 -11.75415 -11.71915 -11.64556 -11.46226 -10.94083 -9.95657 -9.07515 -8.48349 -6.59096 0.38702 0.42619 1.02818 1.13918 1.29434 1.31501 1.42222 2.19963 2.55823 2.77827 2.83345 3.53752 3.84757 3.91229 3.93643 3.96976 4.04144 4.28972 4.33782 4.43580 4.53007 4.60350 4.65633 4.67993 4.83840 5.04623 5.09004 5.14492 5.18986 5.32586 5.40334 5.43716 5.45205 5.72394 5.81384 6.03806 6.31157 6.46072 6.69537 7.04365 8.66824 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.056867 B = 0.002984 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.255849 B = 9381.528119 C = 9760.010613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.123 4.123 4 C -0.081 4.081 5 C -0.210 4.210 6 C 0.100 3.900 7 O -0.322 6.322 8 C 0.079 3.921 9 C 0.452 3.548 10 O -0.536 6.536 11 O -0.348 6.348 12 C 0.188 3.812 13 C -0.553 4.553 14 H 0.053 0.947 15 C 0.030 3.970 16 N -0.925 5.925 17 Si 0.939 3.061 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.258 1.258 21 C -0.162 4.162 22 C -0.080 4.080 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.278 0.722 35 H 0.128 0.872 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -24.846 8.764 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.099 4.099 5 C -0.229 4.229 6 C 0.056 3.944 7 O -0.237 6.237 8 C 0.003 3.997 9 C 0.296 3.704 10 O -0.426 6.426 11 O -0.264 6.264 12 C 0.115 3.885 13 C -0.590 4.590 14 H 0.072 0.928 15 C -0.171 4.171 16 N -0.562 5.562 17 Si 0.761 3.239 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.182 1.182 21 C -0.181 4.181 22 C -0.098 4.098 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.042 -24.372 9.136 27.554 hybrid contribution 0.382 1.115 0.275 1.210 sum -8.660 -23.257 9.410 26.541 Atomic orbital electron populations 1.21761 0.94546 1.02296 1.01832 1.20521 0.96214 0.91038 1.03778 1.20178 1.01393 0.97950 0.92765 1.21155 0.96515 0.93290 0.98969 1.21547 1.06781 0.97538 0.96991 1.19294 0.96663 0.82677 0.95753 1.86035 1.81499 1.26021 1.30133 1.22024 1.05271 0.86760 0.85609 1.23789 0.74599 0.89211 0.82849 1.90631 1.49850 1.75141 1.27015 1.86429 1.75733 1.27836 1.36386 1.20993 0.94493 0.75760 0.97207 1.20922 1.47122 0.98877 0.92069 0.92836 1.25550 0.93696 0.97176 1.00654 1.69948 1.44934 1.13616 1.27747 0.85839 0.80187 0.78766 0.79098 1.18238 1.18825 1.18184 1.20641 1.05250 0.96034 0.96176 1.21096 0.96880 0.92664 0.99164 0.93018 0.93039 0.91229 0.90155 0.90117 0.83473 0.83551 0.84813 0.84846 0.95436 0.95499 0.91233 0.85385 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.71 16 2 C -0.08 -0.80 6.06 29.85 0.18 -0.62 16 3 C -0.12 -1.90 5.13 -19.85 -0.10 -2.00 16 4 C -0.08 -1.32 9.69 22.25 0.22 -1.10 16 5 C -0.21 -4.11 9.04 22.37 0.20 -3.90 16 6 C 0.10 2.48 6.69 22.50 0.15 2.63 16 7 O -0.32 -9.75 9.67 -73.35 -0.71 -10.46 16 8 C 0.08 2.13 5.33 71.24 0.38 2.51 16 9 C 0.45 17.73 8.03 71.24 0.57 18.30 16 10 O -0.54 -24.73 16.25 28.40 0.46 -24.27 16 11 O -0.35 -15.71 10.20 -51.41 -0.52 -16.24 16 12 C 0.19 9.67 4.29 71.24 0.31 9.97 16 13 C -0.55 -32.39 10.00 25.60 0.26 -32.14 16 14 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 15 C 0.03 1.72 5.47 84.65 0.46 2.19 16 16 N -0.92 -55.82 13.96 21.44 0.30 -55.52 16 17 Si 0.94 43.40 27.47 68.60 1.88 45.29 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 21 C -0.16 -3.63 9.99 22.36 0.22 -3.41 16 22 C -0.08 -1.37 9.69 22.25 0.22 -1.15 16 23 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 30 H 0.13 2.80 7.66 -2.38 -0.02 2.78 16 31 H 0.13 2.80 7.66 -2.39 -0.02 2.78 16 32 H 0.03 1.42 7.19 -2.39 -0.02 1.41 16 33 H 0.03 1.37 7.56 -2.39 -0.02 1.35 16 34 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -71.71 315.12 6.20 -65.51 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.01 Total: 5.12 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 3.77 Total: -9.43 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.30 Total: -55.52 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.77 Total: -50.97 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -71.71 6.20 -65.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.093 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds