Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.50694 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.20832 * 120.00206 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00463 * 179.97438 * 11 10 9 14 14 C 1.45190 * 117.00660 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47552 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99715 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99661 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47268 * 90.00570 * 19 17 15 21 21 H 1.48505 * 109.46984 * 210.00117 * 19 17 15 22 22 H 1.48498 * 109.47503 * 330.00274 * 19 17 15 23 23 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 24 24 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 25 25 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 26 26 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 28 28 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 30 30 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 31 31 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 32 32 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 33 33 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 34 34 H 1.08998 * 109.47457 * 300.00688 * 14 13 11 35 35 H 1.09004 * 109.47134 * 59.99828 * 14 13 11 36 36 H 0.96996 * 119.99721 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4501 -4.2382 1.0578 12 8 0.2239 -4.6361 -0.0604 13 8 0.0386 -4.9495 2.1192 14 6 -0.6725 -6.1861 1.8486 15 6 -1.0522 -6.8426 3.1509 16 1 -0.7861 -6.3767 4.0882 17 6 -1.7403 -8.0374 3.1457 18 7 -2.0648 -8.6044 2.0042 19 14 -2.2116 -8.8508 4.7599 20 1 -3.5498 -8.3677 5.1854 21 1 -2.2519 -10.3241 4.5785 22 1 -1.2079 -8.5072 5.7990 23 1 -0.3633 0.0002 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1313 -0.0004 27 1 4.1197 2.1327 0.0107 28 1 5.3552 0.0039 0.0106 29 1 4.5238 -2.8172 1.0286 30 1 3.7611 -3.2610 -0.5173 31 1 5.3001 -2.3666 -0.5085 32 1 2.1104 -3.1353 1.8209 33 1 0.5677 -2.2476 1.8171 34 1 -1.5732 -5.9692 1.2744 35 1 -0.0305 -6.8569 1.2776 36 1 -2.5491 -9.4448 2.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526918602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -111.288123 kcal Electronic energy + Delta-G solvation = -19233.170696 eV Core-core repulsion = 16068.545496 eV Total energy + Delta-G solvation = -3164.625200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47034 -39.37732 -37.32228 -35.49148 -33.73912 -32.91398 -31.37480 -29.30212 -27.63963 -26.78644 -26.56262 -22.98822 -21.93953 -21.04261 -20.31595 -17.95338 -17.11004 -16.78164 -16.29917 -15.85685 -15.55223 -15.46006 -14.68037 -14.22429 -14.07196 -13.86101 -13.24400 -13.21541 -13.13490 -12.81043 -12.51225 -12.14294 -12.03282 -11.71277 -11.59858 -11.43177 -11.29330 -11.10356 -10.98253 -10.33238 -9.98487 -9.72457 -9.67123 -9.37074 -8.76330 -8.67096 -8.54505 -6.24215 -4.30134 0.98793 1.14780 2.84826 2.85226 3.23608 3.28809 3.33485 3.52620 4.16125 4.34480 4.60956 4.64881 4.77431 5.07108 5.11075 5.11766 5.16091 5.25920 5.32785 5.43142 5.51898 5.57024 5.60030 5.66003 5.67644 5.99087 6.13915 6.26019 6.28329 6.41856 6.59173 6.82495 7.18841 7.42074 7.43015 7.77918 7.98248 8.55043 8.82032 9.34548 10.86450 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.003551 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.471284 B = 7883.691868 C = 8086.950577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.093 4.093 7 C -0.119 4.119 8 C 0.092 3.908 9 O -0.309 6.309 10 C 0.074 3.926 11 C 0.452 3.548 12 O -0.499 6.499 13 O -0.356 6.356 14 C 0.207 3.793 15 C -0.530 4.530 16 H 0.072 0.928 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.916 3.084 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.270 1.270 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.870 18.882 -2.034 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.136 4.136 6 C -0.093 4.093 7 C -0.176 4.176 8 C 0.048 3.952 9 O -0.226 6.226 10 C -0.002 4.002 11 C 0.293 3.707 12 O -0.387 6.387 13 O -0.273 6.273 14 C 0.136 3.864 15 C -0.568 4.568 16 H 0.090 0.910 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.742 3.258 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.616 18.427 -2.585 21.422 hybrid contribution -0.272 -0.454 0.737 0.908 sum 10.344 17.972 -1.847 20.819 Atomic orbital electron populations 1.20750 0.90444 1.02865 1.03026 1.20286 0.96938 0.92406 0.99753 1.20921 0.94172 0.97041 1.01421 1.21142 0.94232 0.98024 1.00137 1.20928 0.99816 0.91412 1.01404 1.20283 0.92935 0.96408 0.99714 1.20783 0.99740 0.94349 1.02680 1.18380 0.89412 0.84778 1.02603 1.86067 1.74637 1.34773 1.27092 1.21906 1.00233 0.92443 0.85593 1.22718 0.78187 0.85619 0.84222 1.90654 1.52806 1.69601 1.25687 1.86411 1.67443 1.37862 1.35578 1.20997 0.90909 0.76068 0.98452 1.20995 1.37495 1.06262 0.92088 0.90966 1.24969 0.95275 0.96446 0.97566 1.69981 1.38852 1.18609 1.25357 0.86214 0.79013 0.78252 0.82298 1.20257 1.20882 1.19460 0.90608 0.91161 0.91419 0.85658 0.85829 0.85666 0.91022 0.90350 0.91308 0.89062 0.89061 0.95134 0.95127 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.79 36.01 0.35 -0.90 16 2 C -0.09 -1.11 5.89 -104.47 -0.62 -1.73 16 3 C -0.12 -1.15 9.70 -39.60 -0.38 -1.53 16 4 C -0.12 -1.05 10.04 -39.56 -0.40 -1.45 16 5 C -0.12 -1.15 9.70 -39.61 -0.38 -1.53 16 6 C -0.09 -1.11 5.89 -104.47 -0.62 -1.72 16 7 C -0.12 -1.30 9.79 36.01 0.35 -0.94 16 8 C 0.09 1.25 5.67 -39.22 -0.22 1.03 16 9 O -0.31 -5.01 7.86 -39.37 -0.31 -5.32 16 10 C 0.07 1.14 6.28 36.00 0.23 1.37 16 11 C 0.45 9.56 8.03 36.00 0.29 9.85 16 12 O -0.50 -12.29 16.25 -25.48 -0.41 -12.70 16 13 O -0.36 -8.49 10.20 -39.26 -0.40 -8.89 16 14 C 0.21 5.74 5.22 36.01 0.19 5.93 16 15 C -0.53 -15.17 9.44 -34.44 -0.33 -15.50 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 19 Si 0.92 21.18 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.01 7.53 -51.93 -0.39 0.62 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.21 7.23 -51.93 -0.38 0.84 16 34 H 0.03 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.03 0.90 8.13 -51.93 -0.42 0.48 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -32.84 317.59 -7.12 -39.95 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.86 Total: -2.80 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.63 Total: -5.52 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.12 Total: -26.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.84 -7.12 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.335 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds