Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.50694 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.20832 * 120.00206 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00463 * 179.97438 * 11 10 9 14 14 C 1.45190 * 117.00660 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47552 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99715 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99661 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47268 * 90.00570 * 19 17 15 21 21 H 1.48505 * 109.46984 * 210.00117 * 19 17 15 22 22 H 1.48498 * 109.47503 * 330.00274 * 19 17 15 23 23 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 24 24 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 25 25 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 26 26 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 28 28 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 30 30 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 31 31 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 32 32 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 33 33 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 34 34 H 1.08998 * 109.47457 * 300.00688 * 14 13 11 35 35 H 1.09004 * 109.47134 * 59.99828 * 14 13 11 36 36 H 0.96996 * 119.99721 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4501 -4.2382 1.0578 12 8 0.2239 -4.6361 -0.0604 13 8 0.0386 -4.9495 2.1192 14 6 -0.6725 -6.1861 1.8486 15 6 -1.0522 -6.8426 3.1509 16 1 -0.7861 -6.3767 4.0882 17 6 -1.7403 -8.0374 3.1457 18 7 -2.0648 -8.6044 2.0042 19 14 -2.2116 -8.8508 4.7599 20 1 -3.5498 -8.3677 5.1854 21 1 -2.2519 -10.3241 4.5785 22 1 -1.2079 -8.5072 5.7990 23 1 -0.3633 0.0002 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1313 -0.0004 27 1 4.1197 2.1327 0.0107 28 1 5.3552 0.0039 0.0106 29 1 4.5238 -2.8172 1.0286 30 1 3.7611 -3.2610 -0.5173 31 1 5.3001 -2.3666 -0.5085 32 1 2.1104 -3.1353 1.8209 33 1 0.5677 -2.2476 1.8171 34 1 -1.5732 -5.9692 1.2744 35 1 -0.0305 -6.8569 1.2776 36 1 -2.5491 -9.4448 2.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526918602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -129.893513 kcal Electronic energy + Delta-G solvation = -19233.977486 eV Core-core repulsion = 16068.545496 eV Total energy + Delta-G solvation = -3165.431990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67174 -40.93658 -38.43597 -37.38421 -35.08998 -34.55541 -32.25857 -30.86802 -29.42786 -27.65521 -27.56041 -25.06352 -22.86592 -22.06861 -21.86383 -19.21594 -18.96395 -18.02879 -18.00932 -17.63714 -17.07168 -16.57959 -16.22621 -15.45642 -15.21227 -14.94299 -14.59971 -14.17271 -14.13323 -14.00324 -13.88631 -13.61215 -13.52354 -13.11967 -12.88479 -12.81760 -12.49255 -12.34086 -12.22245 -12.16743 -11.79877 -11.61065 -11.39337 -11.02850 -10.72220 -9.54925 -9.53242 -8.41077 -6.58713 0.11848 0.36174 1.10123 1.36635 1.44847 1.46737 1.59385 2.33307 2.59039 2.93491 3.04273 3.71021 3.78362 3.85653 3.97199 3.99827 4.09142 4.38721 4.44807 4.50767 4.59193 4.63503 4.70659 4.73899 4.84623 4.85403 4.91807 5.15713 5.30156 5.32598 5.49982 5.50784 5.59785 5.64115 5.81288 5.85669 6.41133 6.51575 6.78088 7.13680 8.71534 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.003551 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.471284 B = 7883.691868 C = 8086.950577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C -0.117 4.117 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.107 4.107 7 C -0.117 4.117 8 C 0.056 3.944 9 O -0.333 6.333 10 C 0.088 3.912 11 C 0.449 3.551 12 O -0.540 6.540 13 O -0.356 6.356 14 C 0.219 3.781 15 C -0.557 4.557 16 H 0.081 0.919 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.998 3.002 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.256 1.256 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 20.987 -0.266 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.135 4.135 6 C -0.107 4.107 7 C -0.174 4.174 8 C 0.013 3.987 9 O -0.250 6.250 10 C 0.013 3.987 11 C 0.293 3.707 12 O -0.430 6.430 13 O -0.272 6.272 14 C 0.147 3.853 15 C -0.594 4.594 16 H 0.099 0.901 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.819 3.181 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.180 1.180 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.169 0.831 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.851 20.568 -0.823 23.752 hybrid contribution -0.573 -0.976 0.074 1.134 sum 11.278 19.592 -0.749 22.618 Atomic orbital electron populations 1.20759 0.90382 1.03101 1.02830 1.20471 0.97294 0.92732 1.00248 1.21266 0.94851 0.97108 1.00287 1.21586 0.94083 0.99125 0.97885 1.21269 1.01194 0.90772 1.00280 1.20470 0.92442 0.97592 1.00204 1.20774 1.00131 0.93447 1.03045 1.18711 0.90269 0.84206 1.05498 1.86044 1.75419 1.36388 1.27155 1.21906 1.00861 0.89537 0.86409 1.23904 0.77182 0.86675 0.82973 1.90629 1.54424 1.70857 1.27088 1.86408 1.67392 1.36763 1.36682 1.20541 0.89469 0.77241 0.98017 1.21346 1.38550 1.07232 0.92282 0.90062 1.26146 0.94434 0.96724 1.02008 1.70117 1.39228 1.19219 1.28263 0.84966 0.79195 0.77020 0.76903 1.19014 1.20098 1.17988 0.91076 0.93119 0.88921 0.83060 0.82468 0.83071 0.90254 0.93255 0.89214 0.86408 0.86429 0.98012 0.98005 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.79 71.24 0.70 -1.73 16 2 C -0.11 -2.41 5.89 -19.77 -0.12 -2.53 16 3 C -0.12 -1.93 9.70 22.26 0.22 -1.71 16 4 C -0.11 -1.54 10.04 22.28 0.22 -1.31 16 5 C -0.12 -1.93 9.70 22.25 0.22 -1.71 16 6 C -0.11 -2.40 5.89 -19.77 -0.12 -2.52 16 7 C -0.12 -2.49 9.79 71.24 0.70 -1.79 16 8 C 0.06 1.50 5.67 22.51 0.13 1.63 16 9 O -0.33 -11.07 7.86 -73.31 -0.58 -11.65 16 10 C 0.09 2.75 6.28 71.23 0.45 3.19 16 11 C 0.45 19.82 8.03 71.23 0.57 20.39 16 12 O -0.54 -28.20 16.25 28.38 0.46 -27.74 16 13 O -0.36 -17.59 10.20 -51.42 -0.52 -18.12 16 14 C 0.22 12.83 5.22 71.24 0.37 13.20 16 15 C -0.56 -32.50 9.44 25.60 0.24 -32.26 16 16 H 0.08 4.48 7.81 -2.91 -0.02 4.46 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 19 Si 1.00 43.04 29.54 68.60 2.03 45.07 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.25 6.30 -2.39 -0.02 1.24 16 25 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 26 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 27 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 28 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.32 7.53 -2.38 -0.02 1.30 16 31 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 32 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.12 3.07 7.23 -2.39 -0.02 3.05 16 34 H 0.00 0.12 8.13 -2.39 -0.02 0.10 16 35 H 0.00 0.13 8.13 -2.38 -0.02 0.11 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.32 317.59 6.78 -67.54 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.07 Total: 7.39 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 4.04 Total: -6.33 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.64 Total: -57.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.32 6.78 -67.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.355 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds