Wall clock time and date at job start Mon Mar 30 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46576 * 2 1 4 4 C 1.35180 * 125.47548 * 90.02129 * 3 2 1 5 5 C 1.40287 * 107.20777 * 179.70386 * 4 3 2 6 6 C 1.37997 * 106.52602 * 0.40795 * 5 4 3 7 7 C 1.41526 * 126.11251 * 179.85117 * 6 5 4 8 8 C 1.35758 * 120.00382 * 220.04771 * 7 6 5 9 9 C 1.41287 * 119.99806 * 8.65414 * 8 7 6 10 10 O 1.21707 * 120.00082 * 6.41359 * 9 8 7 11 11 O 1.34997 * 119.99819 * 186.42219 * 9 8 7 12 12 C 1.42900 * 117.00038 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47300 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99800 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99447 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46904 * 89.99866 * 18 16 14 20 20 H 1.48497 * 109.47026 * 209.99938 * 18 16 14 21 21 H 1.48506 * 109.46922 * 330.00192 * 18 16 14 22 22 O 1.34003 * 125.47978 * 269.97372 * 3 2 1 23 23 H 1.08991 * 109.47622 * 59.99941 * 1 2 3 24 24 H 1.09008 * 109.46689 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47211 * 299.99473 * 1 2 3 26 26 H 1.08994 * 109.47211 * 240.00527 * 2 1 3 27 27 H 1.09002 * 109.47322 * 119.99669 * 2 1 3 28 28 H 1.07995 * 126.39731 * 359.96086 * 4 3 2 29 29 H 1.08003 * 126.73818 * 180.25891 * 5 4 3 30 30 H 1.08005 * 119.99651 * 40.03802 * 7 6 5 31 31 H 1.08005 * 120.00247 * 188.93134 * 8 7 6 32 32 H 1.09004 * 109.47055 * 299.99693 * 12 11 9 33 33 H 1.09001 * 109.46985 * 59.99797 * 12 11 9 34 34 H 1.08999 * 109.47146 * 299.99699 * 13 12 11 35 35 H 1.09001 * 109.47453 * 59.99889 * 13 12 11 36 36 H 0.97004 * 119.99517 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2940 2.1605 1.1009 5 6 2.7443 3.4142 0.6611 6 6 2.7247 3.3767 -0.7182 7 6 3.0977 4.4301 -1.5867 8 6 2.3755 4.6712 -2.7106 9 6 1.1522 3.9968 -2.9225 10 8 0.6878 3.2896 -2.0477 11 8 0.4986 4.1369 -4.0954 12 6 -0.7323 3.4258 -4.2411 13 6 -1.3220 3.7051 -5.6249 14 6 -2.6198 2.9547 -5.7788 15 1 -2.9874 2.3403 -4.9703 16 6 -3.3383 3.0534 -6.9515 17 7 -4.4711 2.3988 -7.0855 18 14 -2.7028 4.1166 -8.3497 19 1 -1.8383 3.2999 -9.2390 20 1 -3.8502 4.6492 -9.1274 21 1 -1.9145 5.2459 -7.7939 22 8 2.2918 2.1541 -1.0912 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1818 1.8437 2.1272 29 1 3.0448 4.2464 1.2805 30 1 3.9569 5.0423 -1.3551 31 1 2.7383 5.3752 -3.4450 32 1 -0.5491 2.3566 -4.1338 33 1 -1.4340 3.7530 -3.4739 34 1 -1.5051 4.7742 -5.7327 35 1 -0.6201 3.3776 -6.3919 36 1 -4.9764 2.4679 -7.9106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588466788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:24 Heat of formation + Delta-G solvation = -82.026159 kcal Electronic energy + Delta-G solvation = -19453.355415 eV Core-core repulsion = 16289.999110 eV Total energy + Delta-G solvation = -3163.356306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.46442 -41.47867 -38.06919 -35.58498 -35.40202 -34.71408 -33.43881 -32.76962 -29.49154 -27.46895 -25.69804 -23.93319 -22.75015 -22.60409 -21.66993 -20.56428 -19.37793 -18.72572 -17.85607 -17.59482 -16.96496 -16.54533 -16.31067 -15.44859 -15.32642 -15.12259 -15.00184 -14.65569 -14.11400 -14.01686 -13.73235 -13.49116 -13.33832 -13.19286 -13.02593 -12.50862 -12.48507 -12.41478 -11.99016 -11.82627 -11.57841 -11.46706 -11.41287 -11.14065 -10.83577 -10.66917 -8.89640 -8.36909 -6.45379 -0.58376 1.00716 1.36210 1.38145 1.51263 1.64377 1.94140 2.05343 2.29160 2.32706 2.97678 3.68295 3.85588 3.96913 4.09688 4.12390 4.16634 4.19322 4.28823 4.45647 4.54454 4.58926 4.73328 4.77901 4.85300 4.88816 4.98138 5.06707 5.13658 5.24428 5.25379 5.33472 5.48674 5.60464 5.66817 6.13199 6.27576 6.59883 6.80033 7.19755 8.79445 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.004390 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.499299 B = 6376.026571 C = 7293.055552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.004 4.004 4 C -0.229 4.229 5 C -0.163 4.163 6 C -0.044 4.044 7 C 0.044 3.956 8 C -0.209 4.209 9 C 0.470 3.530 10 O -0.529 6.529 11 O -0.358 6.358 12 C 0.098 3.902 13 C -0.001 4.001 14 C -0.544 4.544 15 H 0.032 0.968 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.956 3.044 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.245 1.245 22 O -0.167 6.167 23 H 0.024 0.976 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.172 0.828 29 H 0.182 0.818 30 H 0.218 0.782 31 H 0.182 0.818 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.052 2.970 15.354 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.057 4.057 4 C -0.248 4.248 5 C -0.182 4.182 6 C -0.093 4.093 7 C 0.027 3.973 8 C -0.228 4.228 9 C 0.319 3.681 10 O -0.421 6.421 11 O -0.275 6.275 12 C 0.024 3.976 13 C -0.039 4.039 14 C -0.582 4.582 15 H 0.050 0.950 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.778 3.222 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.168 1.168 22 O -0.063 6.063 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.143 0.857 28 H 0.189 0.811 29 H 0.200 0.800 30 H 0.234 0.766 31 H 0.200 0.800 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.691 2.622 15.161 24.989 hybrid contribution -0.812 -0.047 -0.548 0.981 sum 18.879 2.576 14.613 24.012 Atomic orbital electron populations 1.21733 0.94351 1.02932 1.01345 1.20273 0.95940 0.86775 1.05231 1.23306 1.01428 0.96394 0.84549 1.21772 1.08392 0.94677 0.99923 1.22601 1.03678 0.99400 0.92533 1.20320 1.06892 0.87185 0.94934 1.21460 0.97137 0.90327 0.88422 1.21794 0.93085 1.05831 1.02079 1.20926 0.87428 0.79812 0.79917 1.90908 1.68924 1.38198 1.44081 1.86185 1.36564 1.66883 1.37865 1.22386 0.81517 0.94511 0.99199 1.19456 0.94571 0.97805 0.92050 1.21109 1.05937 1.29517 1.01655 0.94984 1.25967 0.94525 0.96640 1.01412 1.70046 1.16095 1.43910 1.28303 0.85580 0.78562 0.79878 0.78214 1.18684 1.20298 1.16840 1.84197 1.63543 1.23027 1.35499 0.95621 0.89664 0.92007 0.90509 0.85660 0.81092 0.80039 0.76553 0.80029 0.93618 0.93442 0.94632 0.94856 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.89 71.98 0.71 -2.81 16 2 C -0.05 -0.97 6.46 29.85 0.19 -0.78 16 3 C 0.00 -0.12 6.56 24.98 0.16 0.04 16 4 C -0.23 -5.15 10.76 22.06 0.24 -4.92 16 5 C -0.16 -3.50 10.90 22.71 0.25 -3.25 16 6 C -0.04 -1.14 5.32 23.02 0.12 -1.02 16 7 C 0.04 0.83 9.95 22.51 0.22 1.05 16 8 C -0.21 -4.96 9.99 22.44 0.22 -4.74 16 9 C 0.47 16.98 7.49 68.57 0.51 17.49 16 10 O -0.53 -22.05 12.18 27.07 0.33 -21.72 16 11 O -0.36 -14.48 10.10 -59.16 -0.60 -15.08 16 12 C 0.10 4.58 5.32 71.98 0.38 4.96 16 13 C 0.00 -0.07 4.41 29.85 0.13 0.06 16 14 C -0.54 -32.74 9.66 25.60 0.25 -32.50 16 15 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 16 C 0.01 0.75 5.47 84.66 0.46 1.21 16 17 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 18 Si 0.96 44.38 27.47 68.60 1.88 46.26 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 22 O -0.17 -5.44 7.82 17.58 0.14 -5.30 16 23 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.05 2.21 8.13 -2.38 -0.02 2.20 16 33 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 34 H 0.04 1.73 7.20 -2.39 -0.02 1.71 16 35 H 0.03 1.60 7.57 -2.39 -0.02 1.58 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -78.34 314.73 6.92 -71.42 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.01 Total: 9.07 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.86 Total: -25.19 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.13 Total: -42.11 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -78.34 6.92 -71.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588466788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.608 kcal (2) G-P(sol) polarization free energy of solvation -78.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds