Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 C 1.50702 * 109.47239 * 239.99665 * 2 1 3 5 5 H 1.07994 * 120.00127 * 240.00752 * 4 2 1 6 6 C 1.37880 * 119.99703 * 60.00040 * 4 2 1 7 7 N 1.31516 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47105 * 90.00228 * 8 6 4 10 10 H 1.48497 * 109.47285 * 210.00143 * 8 6 4 11 11 H 1.48504 * 109.47051 * 330.00290 * 8 6 4 12 12 C 1.53004 * 109.46878 * 120.00026 * 2 1 3 13 13 O 1.42903 * 109.47232 * 300.00185 * 12 2 1 14 14 C 1.34993 * 117.00144 * 180.02562 * 13 12 2 15 15 O 1.21714 * 119.99884 * 0.02562 * 14 13 12 16 16 C 1.41291 * 120.00410 * 179.97438 * 14 13 12 17 17 C 1.35749 * 120.00382 * 186.34787 * 16 14 13 18 18 C 1.41534 * 119.99921 * 8.86360 * 17 16 14 19 19 C 1.38000 * 126.10505 * 219.76918 * 18 17 16 20 20 C 1.40287 * 106.52557 * 179.88493 * 19 18 17 21 21 C 1.35180 * 107.20589 * 0.37368 * 20 19 18 22 22 O 1.33998 * 109.04566 * 359.76579 * 21 20 19 23 23 H 1.09002 * 109.47080 * 299.99905 * 1 2 3 24 24 H 1.09000 * 109.46874 * 60.00085 * 1 2 3 25 25 H 1.09003 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46809 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47111 * 300.00269 * 3 2 1 28 28 H 1.09002 * 109.47049 * 60.00076 * 3 2 1 29 29 H 0.96992 * 120.00294 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47229 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47090 * 60.00093 * 12 2 1 32 32 H 1.08005 * 119.99466 * 6.35065 * 16 14 13 33 33 H 1.07994 * 120.00220 * 188.86187 * 17 16 14 34 34 H 1.07999 * 126.74007 * 0.02562 * 19 18 17 35 35 H 1.07998 * 126.39285 * 180.17696 * 20 19 18 36 36 H 1.08002 * 125.47924 * 179.76552 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1119 11 1 3.6309 -1.7566 -3.7118 12 6 2.0400 -0.7213 1.2493 13 8 1.5636 -0.0477 2.4161 14 6 1.9267 -0.5603 3.6109 15 8 2.6296 -1.5528 3.6590 16 6 1.4917 0.0558 4.8057 17 6 1.9594 -0.3798 6.0033 18 6 3.0178 -1.3182 6.0508 19 6 3.1240 -2.3806 6.9251 20 6 4.3228 -3.0380 6.6105 21 6 4.8923 -2.3629 5.5871 22 8 4.1063 -1.3305 5.2531 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7095 1.1618 -3.4843 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2493 32 1 0.7869 0.8732 4.7661 33 1 1.5239 -0.0102 6.9199 34 1 2.4211 -2.6540 7.6981 35 1 4.7184 -3.9170 7.0974 36 1 5.8302 -2.6152 5.1147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588467247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -51.509638 kcal Electronic energy + Delta-G solvation = -19857.924559 eV Core-core repulsion = 16695.891548 eV Total energy + Delta-G solvation = -3162.033010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.38653 -39.96086 -36.85682 -34.85390 -34.06024 -32.81601 -31.23522 -29.03404 -26.06481 -25.58244 -25.19489 -23.83958 -21.65423 -21.24781 -19.38620 -18.83130 -17.97334 -16.74229 -16.00911 -15.77631 -15.72056 -15.41080 -14.70512 -14.20864 -13.83502 -13.04856 -13.02063 -12.82500 -12.78103 -12.51508 -12.25609 -11.73849 -11.45645 -11.14610 -10.94654 -10.68254 -10.38949 -10.24330 -10.15238 -10.06057 -9.83968 -9.72141 -9.32455 -9.25399 -8.72039 -8.34775 -8.01086 -5.99021 -4.10255 0.47639 2.10488 2.66364 3.17956 3.29433 3.35898 3.38475 3.42857 3.54948 4.41470 4.71735 4.97643 5.02458 5.14509 5.27232 5.40532 5.67746 5.75324 5.92665 6.00820 6.15870 6.17578 6.25115 6.51727 6.54633 6.79567 7.02474 7.13425 7.17892 7.21150 7.21832 7.44967 7.66109 7.73009 8.08602 8.19491 8.34264 8.44510 8.89690 9.54922 11.02244 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.004399 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.565448 B = 6364.087391 C = 6907.189512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.128 4.128 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.340 6.340 14 C 0.476 3.524 15 O -0.503 6.503 16 C -0.173 4.173 17 C 0.000 4.000 18 C 0.003 3.997 19 C -0.180 4.180 20 C -0.229 4.229 21 C -0.013 4.013 22 O -0.134 6.134 23 H 0.016 0.984 24 H 0.084 0.916 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -2.047 17.483 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 C -0.186 4.186 4 C -0.548 4.548 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.011 3.989 13 O -0.256 6.256 14 C 0.323 3.677 15 O -0.395 6.395 16 C -0.191 4.191 17 C -0.018 4.018 18 C -0.048 4.048 19 C -0.199 4.199 20 C -0.248 4.248 21 C -0.083 4.083 22 O -0.027 6.027 23 H 0.035 0.965 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.167 0.833 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.823 -1.992 17.044 17.390 hybrid contribution 0.389 -0.875 -0.838 1.272 sum 3.212 -2.867 16.205 16.767 Atomic orbital electron populations 1.21762 0.97365 0.98890 1.00614 1.18246 0.93372 0.93045 0.88399 1.21755 0.98037 0.98204 1.00603 1.20950 1.31829 1.12195 0.89874 0.92588 1.24857 0.94854 0.94914 0.98755 1.69829 1.36476 1.22565 1.23234 0.86549 0.79275 0.79375 0.82529 1.20660 1.21156 1.19938 1.23195 0.98068 0.95812 0.81851 1.86245 1.69246 1.55365 1.14715 1.19968 0.78527 0.83391 0.85844 1.90887 1.34817 1.25678 1.88084 1.21721 1.04422 1.02523 0.90477 1.20699 0.91133 0.91713 0.98274 1.19631 0.91142 1.00656 0.93324 1.22135 0.99052 0.97033 1.01680 1.21615 0.97625 1.03739 1.01790 1.24192 0.97419 0.88509 0.98217 1.84286 1.27324 1.42827 1.48311 0.96476 0.89774 0.95903 0.95897 0.89775 0.96487 0.92948 0.92960 0.93022 0.83273 0.82166 0.83378 0.83605 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.10 37.16 0.30 -2.87 16 2 C 0.07 1.76 0.58 -155.66 -0.09 1.67 16 3 C -0.13 -3.17 8.10 37.16 0.30 -2.87 16 4 C -0.51 -13.94 8.01 -34.44 -0.28 -14.22 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.30 9.35 55.43 0.52 -23.78 16 8 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.08 1.95 4.18 37.16 0.16 2.11 16 13 O -0.34 -7.11 8.76 -41.30 -0.36 -7.48 16 14 C 0.48 8.86 7.49 31.89 0.24 9.10 16 15 O -0.50 -10.39 12.18 -27.71 -0.34 -10.73 16 16 C -0.17 -2.33 9.99 -39.31 -0.39 -2.72 16 17 C 0.00 0.00 9.95 -39.22 -0.39 -0.39 16 18 C 0.00 0.04 5.32 -38.41 -0.20 -0.17 16 19 C -0.18 -2.16 10.90 -38.90 -0.42 -2.59 16 20 C -0.23 -2.68 10.87 -39.90 -0.43 -3.11 16 21 C -0.01 -0.17 12.06 29.64 0.36 0.19 16 22 O -0.13 -2.15 7.81 -20.13 -0.16 -2.30 16 23 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 24 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.05 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 33 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -31.45 306.05 -6.47 -37.92 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.77 Total: -0.20 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.95 Total: -14.13 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.52 Total: -23.78 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.86 Total: -20.51 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.45 -6.47 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588467247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.588 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds