Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 C 1.50702 * 109.47239 * 239.99665 * 2 1 3 5 5 H 1.07994 * 120.00127 * 240.00752 * 4 2 1 6 6 C 1.37880 * 119.99703 * 60.00040 * 4 2 1 7 7 N 1.31516 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47105 * 90.00228 * 8 6 4 10 10 H 1.48497 * 109.47285 * 210.00143 * 8 6 4 11 11 H 1.48504 * 109.47051 * 330.00290 * 8 6 4 12 12 C 1.53004 * 109.46878 * 120.00026 * 2 1 3 13 13 O 1.42903 * 109.47232 * 300.00185 * 12 2 1 14 14 C 1.34993 * 117.00144 * 180.02562 * 13 12 2 15 15 O 1.21714 * 119.99884 * 0.02562 * 14 13 12 16 16 C 1.41291 * 120.00410 * 179.97438 * 14 13 12 17 17 C 1.35749 * 120.00382 * 186.34787 * 16 14 13 18 18 C 1.41534 * 119.99921 * 8.86360 * 17 16 14 19 19 C 1.38000 * 126.10505 * 219.76918 * 18 17 16 20 20 C 1.40287 * 106.52557 * 179.88493 * 19 18 17 21 21 C 1.35180 * 107.20589 * 0.37368 * 20 19 18 22 22 O 1.33998 * 109.04566 * 359.76579 * 21 20 19 23 23 H 1.09002 * 109.47080 * 299.99905 * 1 2 3 24 24 H 1.09000 * 109.46874 * 60.00085 * 1 2 3 25 25 H 1.09003 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46809 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47111 * 300.00269 * 3 2 1 28 28 H 1.09002 * 109.47049 * 60.00076 * 3 2 1 29 29 H 0.96992 * 120.00294 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47229 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47090 * 60.00093 * 12 2 1 32 32 H 1.08005 * 119.99466 * 6.35065 * 16 14 13 33 33 H 1.07994 * 120.00220 * 188.86187 * 17 16 14 34 34 H 1.07999 * 126.74007 * 0.02562 * 19 18 17 35 35 H 1.07998 * 126.39285 * 180.17696 * 20 19 18 36 36 H 1.08002 * 125.47924 * 179.76552 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1119 11 1 3.6309 -1.7566 -3.7118 12 6 2.0400 -0.7213 1.2493 13 8 1.5636 -0.0477 2.4161 14 6 1.9267 -0.5603 3.6109 15 8 2.6296 -1.5528 3.6590 16 6 1.4917 0.0558 4.8057 17 6 1.9594 -0.3798 6.0033 18 6 3.0178 -1.3182 6.0508 19 6 3.1240 -2.3806 6.9251 20 6 4.3228 -3.0380 6.6105 21 6 4.8923 -2.3629 5.5871 22 8 4.1063 -1.3305 5.2531 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7095 1.1618 -3.4843 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2493 32 1 0.7869 0.8732 4.7661 33 1 1.5239 -0.0102 6.9199 34 1 2.4211 -2.6540 7.6981 35 1 4.7184 -3.9170 7.0974 36 1 5.8302 -2.6152 5.1147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588467247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -68.141504 kcal Electronic energy + Delta-G solvation = -19858.645770 eV Core-core repulsion = 16695.891548 eV Total energy + Delta-G solvation = -3162.754222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.37584 -41.44275 -38.51684 -36.65700 -35.15089 -33.79034 -33.26467 -30.08771 -27.72617 -27.59099 -27.19984 -25.16930 -22.62544 -22.40182 -20.77945 -20.52557 -19.19284 -18.03583 -17.83452 -17.33948 -17.01096 -16.89110 -16.37563 -15.22568 -15.18677 -14.78392 -14.68634 -14.31130 -13.74137 -13.65703 -13.41922 -13.37223 -13.23910 -13.01155 -12.83401 -12.63662 -12.34485 -12.14729 -11.70322 -11.62826 -11.24253 -11.17758 -11.12886 -10.75081 -10.70428 -10.41355 -8.99214 -8.05374 -6.23650 -0.54585 1.08325 1.42235 1.43518 1.52880 1.70468 2.05112 2.13492 2.41831 2.47244 3.17579 3.81055 4.03542 4.12647 4.18962 4.25980 4.28864 4.49996 4.59779 4.75758 4.81955 4.85427 5.00896 5.03126 5.11198 5.19126 5.21209 5.30144 5.38013 5.60527 5.62249 5.65725 5.71515 6.05953 6.16695 6.26041 6.36381 6.78463 6.89951 7.44104 8.94446 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.004399 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.565448 B = 6364.087391 C = 6907.189512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.060 3.940 3 C -0.116 4.116 4 C -0.535 4.535 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.102 3.898 13 O -0.349 6.349 14 C 0.469 3.531 15 O -0.533 6.533 16 C -0.208 4.208 17 C 0.040 3.960 18 C -0.040 4.040 19 C -0.170 4.170 20 C -0.232 4.232 21 C -0.033 4.033 22 O -0.170 6.170 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.178 0.822 33 H 0.216 0.784 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -2.365 19.377 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.059 3.941 3 C -0.174 4.174 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.027 3.973 13 O -0.265 6.265 14 C 0.318 3.682 15 O -0.427 6.427 16 C -0.227 4.227 17 C 0.022 3.978 18 C -0.089 4.089 19 C -0.189 4.189 20 C -0.251 4.251 21 C -0.102 4.102 22 O -0.064 6.064 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.196 0.804 33 H 0.233 0.767 34 H 0.198 0.802 35 H 0.191 0.809 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.592 -2.306 18.957 19.272 hybrid contribution 0.539 -0.862 -1.262 1.620 sum 3.131 -3.167 17.696 18.247 Atomic orbital electron populations 1.21601 0.96991 0.98490 1.00341 1.18287 0.93700 0.93261 0.88820 1.21596 0.97569 0.97929 1.00299 1.21188 1.32376 1.12413 0.91304 0.93585 1.25519 0.94957 0.95566 1.01152 1.69934 1.36722 1.23197 1.23882 0.85633 0.78662 0.78450 0.79321 1.20183 1.20459 1.19940 1.22690 0.96966 0.95003 0.82594 1.86227 1.69744 1.55511 1.15057 1.20901 0.77822 0.83317 0.86125 1.90870 1.36409 1.27172 1.88215 1.21802 1.07191 1.04966 0.88698 1.21436 0.88488 0.88402 0.99431 1.20352 0.91895 1.02639 0.94049 1.22631 0.99190 0.95843 1.01231 1.22055 0.97479 1.04288 1.01291 1.24859 0.98270 0.88185 0.98910 1.84259 1.28507 1.44090 1.49586 0.94860 0.91705 0.96309 0.96397 0.91681 0.94950 0.92772 0.94327 0.94223 0.80428 0.76736 0.80239 0.80929 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.10 71.98 0.58 -5.21 16 2 C 0.06 3.06 0.58 -52.93 -0.03 3.03 16 3 C -0.12 -5.80 8.10 71.98 0.58 -5.22 16 4 C -0.53 -29.75 8.01 25.60 0.21 -29.54 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -49.81 9.35 21.45 0.20 -49.61 16 8 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.10 4.83 4.18 71.98 0.30 5.14 16 13 O -0.35 -14.72 8.76 -59.12 -0.52 -15.24 16 14 C 0.47 17.47 7.49 68.57 0.51 17.98 16 15 O -0.53 -22.43 12.18 27.05 0.33 -22.10 16 16 C -0.21 -5.24 9.99 22.44 0.22 -5.02 16 17 C 0.04 0.79 9.95 22.51 0.22 1.01 16 18 C -0.04 -1.03 5.32 23.03 0.12 -0.91 16 19 C -0.17 -3.60 10.90 22.71 0.25 -3.36 16 20 C -0.23 -4.95 10.87 22.06 0.24 -4.71 16 21 C -0.03 -0.82 12.06 67.11 0.81 -0.01 16 22 O -0.17 -5.39 7.81 17.69 0.14 -5.25 16 23 H 0.03 1.49 7.68 -2.39 -0.02 1.47 16 24 H 0.06 3.47 6.07 -2.39 -0.01 3.45 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 28 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 29 H 0.26 13.85 8.31 -92.71 -0.77 13.07 16 30 H 0.04 1.89 8.13 -2.39 -0.02 1.87 16 31 H 0.04 1.93 8.13 -2.39 -0.02 1.91 16 32 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.22 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.22 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -69.34 306.05 7.70 -61.64 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.07 Total: 9.95 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.46 Total: -24.86 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.20 Total: -49.61 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.05 Total: -42.58 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.34 7.70 -61.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588467247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.505 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds